CmaCh07G001480 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G001480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant self-incompatibility protein S1 family
LocationCma_Chr07 : 760728 .. 764135 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGGCGATAATGGCTCAGCCATCTTTTGCAATCTCAAAGGGGTATGCACCATTTAGTGAATGGAAGGTGACGGTTATTAACCAATTGAGTCCAAGTCAGACTTTATTTCTTCGCTGCAAATCAAAAGATGATGACTTAGGTGATCACACCCTACAAGTAGGTCAAAGTTTCTCATGGAAATTCAGAGTGAATTTTTTCGCAACTACCCTTTTTTGGTGTAATATGCGAACCACATCAAATAAACATGTGGCAATGGAAGTATTTTGGCCCGAGAGTCAAGATTGGCTGGGTTACAGATGCGACTATGGGCTTTGCAATTGGAATGCTAAAGATAACGGCATTTATTTGGAGAATATTCCTAAAAAATCAATGGAATTTGTGCACAGTTGGGAAAACTAAGGTGAGGTACTGCAAACTCGAGACACGATTTACCGTGCTTTCTGTTTTTAAATAAATTTGGATGTTTTGTTCTAATGAAATGCATTTAAAGGTGTAGTTGAATAAAGCTTAGTTTTTCTTTTAAATGGATGAATTTGCAACTAGTATGTTTTTATCTTTCTACTTTAAAATGAGGTTAGCATGTATTTAGTAACGAACCTGAATCAATTTAGGGTTTTAGAAAGTCGAGCCATTATAGTTATTGGAATTTATGACCTAAAGTCTCGTATTTTATGATTTAGTTTTAATAATAATTTTGATTAGTTTAGTTTCAATTTAACCTATGAAAAGTGGTAGACTTTTAGTATAATCTTGAAGAACATGTGGTTGACATATGAGAGCATCACGTTCAAGAAATAACCTAAATGGTCTAAAGTATATGAATAAAGTTGAGTATCTTGTTCTCATAACAGTAGTGATACGATCCACTTTATAATTGCTACAAATGATTGGATTCAAATCGTCAGTATGAAGACATGCGAGCAAAAACATTATATACAATAAATTTGTATAAGATTAGATCGTAAAATATTTAATCTCTCTTTATAAATAAGTTAATTTAGAAGATTAATACTTTACCATATAATCTACCATAATTATTAACTTCGGGTGGTTAAATGTATCAGGACAACAAGAATTTTTTTGTTCCGTTTTAAAAATTGTTCTCCTAATAAATTGTTCAAGACATAAACAAAAATGACAACTAGATTTTTTAGCATAAGTTTTAACCTTACTAAATTAGGAAGAAGATAATAAATTCAAACAATTTTTTGTTGGGGTCGATCAAACTAATCTCGTCACCCCTCTTTGATTGGATATATAAGAAGGGTAGACGTGATTGAAAGAAAAAAAAAGCATTTAAATTAATGAATCCTTTCATGAATTTCTGCATCATTTCATATCTTCTAGTGGTAACAACAGCGACAGAGAAATTATCTTCTGCAGACACAAATGTGTATACGACGCCATTGACAAAATGGACGGTGACGATTACTAACCAATTGAGTCCAGGGCAGATTTTGTTCCTTCGATGCAAGTCAAAAGATGATGATTTGGGTGCTCAAACGCTACACGTAGATCAAAGTTTCTCGTGGAAATTCAAAGTAAATTTATTATCAACCACCCTTTTTTGGTGTAATCTACGTACCTCATCAAACAAGCATGTGTCAATGGAAGTATTTTGGCCGGAGAAACATGAATGGCTTGGTTATAGATGCAATTACGAGTATTGCTATTGGGATGTTAGAGACGATGGCATTTATTTGGACAATCTTCCTAAGAACATAGATGAATTTGTGCGTGGTTGGGAAAAATAGGATAAGTATGTGGTTGAGGATGAATGGTTGAAAATATTATACTCCCACAACTTTTATATAAGTTTATACATATTTCATATTAAATACATCAATAAAATTAAAAAATAATAATAATAAGGAAAAAAAAAATTATTAATAAAATTTTAATTCTATTTTTCAGTCCCGTCTAAATTTGAATTATCTCTGTAATTTTATCAACCACATCTTTTTCATTTATTTATTTTTATCTCCTACTGGTCTATAATTGGTAAATAATAATTACTAAAAACATTTGGATCCCAATCAATCTCCTCCCATATAAGAAACAAAAAGCGTAGTCTCAAAAAATAAATGTACCTTTTGAACCATTGCTGCATCCTTTCATGTCTTCTATCGGTTGCCATCATTCGCAACTCCAACATTTGCTCGCCCAAAACAGCATATGTCAGCATTGACTGAATGGAACGTGACAATGATAAACGACTTGGGTTCATGCCATACTATGTTAGTTCACTGCAAATCAAAAGACGATGATTTGGGTAATCATACGCTACAAGTGGGACAAAGTTACTCGTAGAAATTTAGAATAAATCTTTTAGCAAACACCCTTTTTTGGTGTAATCTAAGTACCTCGTCAAACAAACCTGTGTCGATGGAAGTATTTTGGCCGGAGAATAAAAAGGACTGGCTTAGTGCTAGATGCAACTATCAACGTTGTGTATGGCTGGCTAGAGAGGATGGCGTTTATTTGGAGGATCTTCCTTACAAAGCAATAGAGTTCATTCGTGGTTGGGATAAGTAGGATGAGCATGTGCTTGATTTGAGATTATTGTTGTGAGCCATATCCATATTTATTGGAAATGTTTTATTCCAATAATATTTAAATAAGGCATTTCATATAATTTCCATATCTTTCCCCTCTTAATACTATCAAATATTTTTAAGATAATGTTTAAGTTTTATCAATCCTAACTTTGCGTATTCCGAAAATAATAATTATTTTTGTATATTTATTAATGGTTCTTAAAAATTAAAAAAAAAAAAAATTAATTGGAGGGAAAAACCCTACAGCTGTTAATCACTTGACAGCGAACACCAACAACAACGGACCGATTGTGTTTCCATAAACCCTAGACTTATCGCCTTCCCTCTTCCTCTTCGCGCGGTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTCTTCGAATTCTTCTTAGCCGCCGCTTCTTCTTTTCCCGTCGTTGCTTAACTTCAATCTCCTGCCTTCCGACGCCTTCCCGTCGATCTGAGTAAGTGCCTCTTTCTCTCTACTGATTCTTCTTCTTTGCTGCCATCGTCGGCTTGGGGTTCACTGAGATTCGAGGACGCTCTTGAATTTTATGCCATCTTCTGGAACTCATATTCACTTTTGATTTTCCTAAACTTATTAGAGTTAATTTGTTACTTTGTTTCTTTATGCCTCCTCTGTTTTAGTATATCTTATCACTTCGAGTTATTGAGATCATGAAAAACTAGGTTTTGCTTATATCACTGTAATTTTTCTCTGTTGGCTGTCTGATTATTTTCTGTTCATGCTTTATGCAGGTTTAATTTCCATACGAGTAGTTCTTTCATCGCTTCTTCTTTGTTTGAGGGATGTTGCTTTTCTGATGGTCTGGGTTGCTTGTAA

mRNA sequence

ATGGTAATGGCGATAATGGCTCAGCCATCTTTTGCAATCTCAAAGGGGTATGCACCATTTAGTGAATGGAAGGTGACGGTTATTAACCAATTGAGTCCAAGTCAGACTTTATTTCTTCGCTGCAAATCAAAAGATGATGACTTAGTGGTAACAACAGCGACAGAGAAATTATCTTCTGCAGACACAAATGTGTATACGACGCCATTGACAAAATGGACGGTGACGATTACTAACCAATTGAGTCCAGGGCAGATTTTGTTCCTTCGATGCAAGTCAAAAGATGATGATTTGGGTGCTCAAACGCTACACGTAGATCAAAGTTTCTCGTGGAAATTCAAAACTTATCGCCTTCCCTCTTCCTCTTCGCGCGGTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTCTTCGAATTCTTCTTAGCCGCCGCTTCTTCTTTTCCCGTCGTTGCTTAACTTCAATCTCCTGCCTTCCGACGCCTTCCCGTCGATCTGAGTTTAATTTCCATACGAGTAGTTCTTTCATCGCTTCTTCTTTGTTTGAGGGATGTTGCTTTTCTGATGGTCTGGGTTGCTTGTAA

Coding sequence (CDS)

ATGGTAATGGCGATAATGGCTCAGCCATCTTTTGCAATCTCAAAGGGGTATGCACCATTTAGTGAATGGAAGGTGACGGTTATTAACCAATTGAGTCCAAGTCAGACTTTATTTCTTCGCTGCAAATCAAAAGATGATGACTTAGTGGTAACAACAGCGACAGAGAAATTATCTTCTGCAGACACAAATGTGTATACGACGCCATTGACAAAATGGACGGTGACGATTACTAACCAATTGAGTCCAGGGCAGATTTTGTTCCTTCGATGCAAGTCAAAAGATGATGATTTGGGTGCTCAAACGCTACACGTAGATCAAAGTTTCTCGTGGAAATTCAAAACTTATCGCCTTCCCTCTTCCTCTTCGCGCGGTTGTTCTCTTCGAGGGGGGCTCTTCGCCCTCTCTCTTCGAATTCTTCTTAGCCGCCGCTTCTTCTTTTCCCGTCGTTGCTTAACTTCAATCTCCTGCCTTCCGACGCCTTCCCGTCGATCTGAGTTTAATTTCCATACGAGTAGTTCTTTCATCGCTTCTTCTTTGTTTGAGGGATGTTGCTTTTCTGATGGTCTGGGTTGCTTGTAA

Protein sequence

MVMAIMAQPSFAISKGYAPFSEWKVTVINQLSPSQTLFLRCKSKDDDLVVTTATEKLSSADTNVYTTPLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFKTYRLPSSSSRGCSLRGGLFALSLRILLSRRFFFSRRCLTSISCLPTPSRRSEFNFHTSSSFIASSLFEGCCFSDGLGCL
Homology
[Close]
BLAST of CmaCh07G001480 vs. TrEMBL
Match: M4D3M4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 21  SEWKVTVINQLSPSQTLFLRCKSKDDDLVVTTATEKLSSADTNVYT-----TPLTKWTVT 80
           S+W++TV+N L  S+TLF+ CKSKDDDL      + L   D   +T        TK+ V 
Sbjct: 128 SDWQITVVNGLITSETLFVHCKSKDDDL----GEQNLHLGDRFSWTFGENMLHSTKFNVE 187

Query: 81  ITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKF 113
           I N+L   + L + CKS   D     L++ +SF +KF
Sbjct: 188 IVNKLGFNKKLKVHCKSGSHDFPITYLNIGESFQFKF 220

[Close]
BLAST of CmaCh07G001480 vs. TrEMBL
Match: R0F8D7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006666mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 68  PLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFKTYRLPSS 121
           P+ K  VT+TN + PG +L L CKS+DDDLG Q L   Q F WKF+   + S+
Sbjct: 27  PVGKNVVTVTNDIGPGIVLNLHCKSRDDDLGVQALQPGQQFQWKFRENLIKST 79

[Close]
BLAST of CmaCh07G001480 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-07
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 

Query: 63  NVYTTPLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFKTYRLPSS 121
           ++    +++W VT+ N L+ G+ LF+ CKSK+DDLG   L     FSW F    L S+
Sbjct: 32  DIIVPKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHST 89

[Close]
BLAST of CmaCh07G001480 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1 

Query: 49  VVTTATEKLSSADT---NVYTTPLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVD 108
           +V T  + + + DT   ++    +++W VT+ N L+ G+ LF+ CKSK++DLG   L   
Sbjct: 15  LVLTCQDHVLARDTTTRDIVVPKISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFL 74

Query: 109 QSFSWKFKTYRLPSS 121
             FSW F    L S+
Sbjct: 75  DRFSWNFGENMLHST 89

[Close]
BLAST of CmaCh07G001480 vs. NCBI nr
Match: gi|659080970|ref|XP_008441078.1| (PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 

Query: 68  PLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFK 114
           P + W V + NQLSPGQ L + CKSKD+DLG  +L V + FSWKFK
Sbjct: 35  PFSSWKVVVFNQLSPGQSLTVHCKSKDNDLGEHSLRVSEKFSWKFK 80

[Close]
BLAST of CmaCh07G001480 vs. NCBI nr
Match: gi|659109767|ref|XP_008454866.1| (PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 65  YTTPLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFKTYRLPSS 121
           YT   +KWTV I N+LS  + LF  CKSKDD+LG  T+ V Q++ W+FK   L ++
Sbjct: 7   YTPSFSKWTVAIINELSSNKQLFAHCKSKDDNLGYHTVEVGQTYQWQFKENALQTT 62

[Close]
BLAST of CmaCh07G001480 vs. NCBI nr
Match: gi|449437310|ref|XP_004136435.1| (PREDICTED: uncharacterized protein LOC101208617 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 

Query: 68  PLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFK 114
           PL+ W V I N+++    LF+RCKSKDDDLGAQ L V Q FSW FK
Sbjct: 29  PLSSWKVNILNEMTKDS-LFIRCKSKDDDLGAQNLGVKQQFSWSFK 73

[Close]
BLAST of CmaCh07G001480 vs. NCBI nr
Match: gi|659071500|ref|XP_008460139.1| (PREDICTED: uncharacterized protein LOC103499037 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1 

Query: 67  TPLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFK 114
           TPL  W V I+N +   Q LFL CKSKDDDLG   L   QSFSW+FK
Sbjct: 8   TPLEHWGVRISNDMQSKQTLFLHCKSKDDDLGRLNLGFAQSFSWRFK 54

[Close]
BLAST of CmaCh07G001480 vs. NCBI nr
Match: gi|659093656|ref|XP_008447645.1| (PREDICTED: uncharacterized protein LOC103490052 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1 

Query: 68  PLTKWTVTITNQLSPGQILFLRCKSKDDDLGAQTLHVDQSFSWKFKTYRLPSSSSRGCSL 127
           PL +WTV ITN++  G  L L CKSKDDDLG Q L   Q+FSWKF+   L  ++   C +
Sbjct: 208 PLERWTVEITNEMQ-GLTLLLHCKSKDDDLGKQILKQGQNFSWKFRE-NLWQNTLYWCYM 267

Query: 128 RGGLFALSLRI 139
             G   +SL +
Sbjct: 268 TNGQNHVSLEV 276

The following BLAST results are available for this feature:
BLAST of CmaCh07G001480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G001480 vs. TrEMBL
Match NameE-valueIdentityDescription
M4D3M4_BRARP1.6e-0638.14Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
R0F8D7_9BRAS7.7e-0649.06Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006666mg PE=4 SV=1[more]
BLAST of CmaCh07G001480 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16295.13.7e-0739.66 S-protein homologue 1[more]
AT4G29035.12.4e-0634.67 Plant self-incompatibility protein S1 family[more]
BLAST of CmaCh07G001480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080970|ref|XP_008441078.1|3.4e-0758.70PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo][more]
gi|659109767|ref|XP_008454866.1|2.2e-0648.21PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo][more]
gi|449437310|ref|XP_004136435.1|3.8e-0660.87PREDICTED: uncharacterized protein LOC101208617 [Cucumis sativus][more]
gi|659071500|ref|XP_008460139.1|5.0e-0659.57PREDICTED: uncharacterized protein LOC103499037 [Cucumis melo][more]
gi|659093656|ref|XP_008447645.1|5.0e-0646.48PREDICTED: uncharacterized protein LOC103490052 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G001480.1CmaCh07G001480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 73..131
score: 6.1E-12coord: 24..53
score: 1.
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 68..114
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G001480CmoCh07G001470Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G001480Lsi01G002000Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G001480Cp4.1LG19g06630Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G001480CsaV3_6G051250Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G001480Bhi03G000016Wax gourdcmawgoB1069
CmaCh07G001480Carg15376Silver-seed gourdcarcmaB0766
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G001480Silver-seed gourdcarcmaB1112
CmaCh07G001480Silver-seed gourdcarcmaB1312
CmaCh07G001480Cucumber (Chinese Long) v3cmacucB1003
CmaCh07G001480Watermelon (97103) v2cmawmbB875
CmaCh07G001480Watermelon (97103) v2cmawmbB887
CmaCh07G001480Wax gourdcmawgoB1080
CmaCh07G001480Cucurbita maxima (Rimu)cmacmaB238
CmaCh07G001480Cucurbita maxima (Rimu)cmacmaB528
CmaCh07G001480Cucumber (Gy14) v1cgycmaB0048
CmaCh07G001480Cucumber (Gy14) v1cgycmaB0619
CmaCh07G001480Cucurbita moschata (Rifu)cmacmoB847
CmaCh07G001480Cucurbita moschata (Rifu)cmacmoB861
CmaCh07G001480Wild cucumber (PI 183967)cmacpiB864
CmaCh07G001480Wild cucumber (PI 183967)cmacpiB893
CmaCh07G001480Cucumber (Chinese Long) v2cmacuB847
CmaCh07G001480Cucumber (Chinese Long) v2cmacuB877
CmaCh07G001480Melon (DHL92) v3.5.1cmameB782
CmaCh07G001480Melon (DHL92) v3.5.1cmameB798
CmaCh07G001480Watermelon (Charleston Gray)cmawcgB754
CmaCh07G001480Watermelon (Charleston Gray)cmawcgB759
CmaCh07G001480Watermelon (97103) v1cmawmB826
CmaCh07G001480Watermelon (97103) v1cmawmB819
CmaCh07G001480Cucurbita pepo (Zucchini)cmacpeB861
CmaCh07G001480Cucurbita pepo (Zucchini)cmacpeB881
CmaCh07G001480Bottle gourd (USVL1VR-Ls)cmalsiB796
CmaCh07G001480Cucumber (Gy14) v2cgybcmaB141
CmaCh07G001480Cucumber (Gy14) v2cgybcmaB861
CmaCh07G001480Melon (DHL92) v3.6.1cmamedB883
CmaCh07G001480Melon (DHL92) v3.6.1cmamedB897