Lsi01G001250 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G001250
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAtp-dependent RNA helicase
Locationchr01 : 1306649 .. 1313080 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAGCCAAGTTCTGTCTAAAACCCTAACGCTGTGCCTGTGGGGGGTTTAGATTCTGAAGCTGTGTTTGTTAGACAATGGCGGAGAAGCAGAAGCAGAAGCGAAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTCTAATTGAGGAATGCCCCCTTGAGATCCTCCCTCTGCTCGACCCCAGGCATTTTTCTCTTTCGTTTTAATCATTCGTATACTTAATCTATTACTGTCTTCGAGCTTTTCTCTAGTTTATGACCTCAAATTTGCAACTTTTTATTTGTCAATTCGTAATTTATAGCACTTCACTGGAAATAAGTGAATTTTTGGTTGGCTATCTCATTTTGAGCATTAGGCTGTAATATTTCTGTCAATTGTATCGACAGTAGTTGAAATTTTGGTTATTCTTTTATTTCTTAGCTTGTGCTCCATATGGCTGGAGATTTAGATGACTCTTTTTTGGTGCCGGGAGATTCATTATCCTAGAGTCTAGTTGCCCAGTTTCTACAGCATTTGACAAAGCTTTCCGTATTTTTCTGACTGAAGAAAACTAAGTTAAATGCTTTCCTCTTCCTCAAGGGTCCAATTTTAACGTTTTTTCCCCATTTTTTTTTCTTCCAACGTTAGATTGAAGGTAGCTTTGCAGAACATGGGCATCTCTTCACTGTTCCCAGTGCAACTCGCAGTTTGGCAAGAGGCAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTAGTTGTGCTGCCTACTCGTGATCTGGCCTTGCAGGTTTTTGATTTTCTATTACTTATTTAAGATATAAATTCCTGTAACGTGTAAACAAGTAGTCCATTGAGTTTATGCCCCTTCTTTTACATGGAATCTGGTATTGCACACTGTTTTAATATTCTGTAGTTTATTCCAGAACTTATCCAAAAACCTTGTTAATGAAAGAATAAATGATTAAAATGACGGCAGTTTTTTTTTTTTAATTTTTTTTTCTTCTTCCGGACTCAGTTTTTGTTGGAAATTTACTGGGGACATTCTTGGTGCTTCCGAGTTTTGGCATTGATCACTCTCGCCTGCTTAGCATTCTAATATCAACACGTTCTTATTTTACATTTAAAATTTCTCCATGATTTGCAAGATATCTCTCTTCCTCTCTCTTGAATACTTATGTATATATATTTATATATACTCAGCCCTTTATATAATGAGTAACAAAAAGAAATGGAAAAGGAATCTTGTTTCTATACAGTGTTAAATGATGCTATTCGACTGATGGGATGAATTAGATATGATCTTGATCTTGGAATAACTTTGCTTTTTGGGTAAAAATCTTATAATTAGTCTGAAATTGTTCTTATTGATGAAATGCATGAAATATGCTCACAACTCCTTTTAATCAGGTTAAAGAGGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCCGTTGGTCAGTCTTCCATAGCGGATGAGATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGACAGGTATCTGTTACGATCCAGAAGATTTTTCGGCTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGACTGATGGACCATATTAACTTCACGAAGGGATTTACTCTTCAGCATCTACGTTATCTTGTAAGCACTTATTGTTATAACCTAATATTTTTAATTACATTTATATTTGAGAAGGCTCAATGTTGATGTTATATACTATGGCAAATGTCTTATCTGAAAAAATGATATACTGTGTTAAATGATGGTTCAAGGATGGACTTGGTCACCGTGTCTGACCAAAATTTATTTGTTATAGAAATTTTACATTCCACTGCCTACAAGTTTTATTTATTTATTTATTAAAAATATTATTATTATTATTAGTTTAAATTAATGTGCCTGATTGAATTATATAGAATTTTAAAAATCAATATAGCTGTTTTGGGTGAGCCTTCTTAATTGTTTTTATTGGTGAAATTTCCCCTATTGTTGATTTTATCCTACATAGTGCACACCAAATACAAAGCTGGTTTTGTGTTAGTTGTTTTGTAGGGATCATTGATTTTCAAATGGGTCAGTAAGCTGAAAAATTAGGTTTATATCTATAAATAAGTCTACTATCATGTGTTAGGATAAGTGATTATTTGTATACCAATTTTTGAGCCGTTGGTGTCTCAATACAGTCTGTTGATGAGATATACTATTCAGGTTATTGATGAGACCGATAGGTTATTAAGGGAAGCATATCAATCTTGGCTACCTACTGTGCTTCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACATCCTTGTTCGGCTGGATCCTTGAAAACCATAAGGAGATTGTAAGTTCTACTTGTAATAATGTTCACAATTGTTATGATTAATCATCATTATATTTTTTTGTCTGGCATGTTCTTTTTGGTTTATCTGAAAATTTCCCGTGTTATTAAACTTTAGTGCTGACTGCATCTACTGTTTGGATTCATGTAGTGGTGTCGAGAGGGGTTTTAAGGGTAAACCTTACCCAAGGCTTGCAAAGATGGTTCTATCTGCAACGCTTACACAGGATCCAGGCAAGCTTGCTCAGCTTGATCTGCATCACCCTCTATTATTAACAACTGGGAAAAGAAGATATAAACTTCCGGAGAAATTAGAATCATACATGATGGTAAATTGGCTCATCTCTTAACTAATGTGTGATTGAGTCATTTCTTGGGTGCTTGTTTTGGAAGGAAAAAATGTGTACACTTAACCATAAAAATGGGACACCGTTGGGCATTGATCTTGGTGAGGGGTTTAACCCTAGCCTTGGGCTTTGGATACCAATGAGTTTCATAAACATTCATACTTATTGCTTTTTGGCAACATGATCCTAGGAGATATATTTGCAACTTTTAATGTTCTCTGATGACATGGTCAATACTTTCTTAAGTAACCTTTTAGTTTCAATTTGTTTCTTTGCAGATTTGTGAATCAAAACTCAAACCATTAAATCTGGTTGCCCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCCGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGACGGCTTGGAACTCAGGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGGTAACACTGAAAGATTGTTTTTAACTTAGTGCTTTCTCCGTTCTCCGTTCCTATTTTGAGTATTGTCAGAAAGTAATGAAACATGTGGAACATGAAGCCTGGGATTTTTTAAATTTCAAGGACTGATTCATGGTTTTCAGAGTCAGCCCTACTTATTTCTGTGCACGGGCTTCCTAGAATAGAAACTGTAACTTTGTTATTTAGAATTTACATATTCAGATTATTCTACAATTAAATGTGGACCACATCTGTTTCATAGAAGATTTTTGTTTTCATTTTAAAAAATATTTATTTACATATTATTTTCATTTTATACTAGAAAATGCTGTATGTGAGAAAACTGTCTTTTATTGACACTCTTTAGTTAGCATTTTAATCTTTTACCATTTATCATTTTAATCATTGATGAGTGTTTTTGTTCCATGGAGATCGGGTATTACTAATATAGGTTGCTGTTTGTACCATTTATCATTTTGATCTTTTAAAATGTTCTTATTTGAGCATACTGCACTTTTGCTTTCATTCTCTCTTATGGGATGTTCATTTTATTGCTGAGATTTCCTGGTGATTAAATTGACATACGTTCTGCAGCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAATACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTGAGGGTGTGAAAAATGTTATTAATTACGACATGCCTGCATTTATAAAAACATACATTCATCGAGCTGGTAGGACTGCAAGGGCTGGGCAGTCTGGGCGTTGTTTCACATTGCTGAGAAAAGATGAGGTATTTTGAGATCAAGTCTTTACGATTAAATTATGTTGTTTTCATGCCTCTCTTTGGATTTTTGGTTGTAAAGACCTTTGTAATTATCCCTCTAGGTCTTATTTTGTTTGATTGAAGTTAGTTGGAGCTCTGTTGGGGTGTTTTTCTTTAATTTTATCTTTGCTTTTTACCAAAAGAAAAATGTTTTTAACATGCTTAGCTTGCAATTAGTTCCTTTTCTATATGTCTATGTCCCAATCAGCGATGAATTGGCTTTATTTCTTCACTTCTGTCCTCTGGCTGCCATGTGGGTTGATTTTCCCTTTTCTTTTTTTTTTTTTTTTTTTTTTTGTGCAAGATATAAAGTATATAACAAGTCCGAAACTTTTAATTTTGTGTCTAGTAGGTTCTTGAATTCTCAATTTTGTGTCACATAAATTCCTGACATATATAAAATTTATAAAAATCAATTAGTTCTTATAACTTTTTTTTAAAATATAATTTTAAATTAAAAAAAATGTTTTATTATTATTATTTTATCTATTAGACTTAAAATTCAACTACGTAGAATCCAAAGCTTTCAATTTTATATAGTTGCTTGAATTATTAAAAAAACTGCAGACTAGATCAAATGACGTATTAGGCACAAAATTAAAAATTCAGGGACATATTGGAAATAAAATGAAGAGTTTGAAGACCTATTAAACACTTGTTCAAGTTCAAGCCTATTGGACTCAAAATTAAAATTCAGGGACCTATTATTGATACTTTTTACAGTTCAACGAGGAAGGACTAAATAAACACAAATGTGAAAGTTTAGGTTTACACTTGCAATTTAACGTAAAATAATAATACTATTTAACCTTTGGCCTTGTACAATCCCTGTGGTAATGCATAAGCCATAAGTAAATACTTGCTGGTTTATAGTTCAGTTAGAAGGTGACTCCCTTTTGGTTTGAGCTTTCTATGTTTCTGGTTAAAAAAAATTACAGATGAATGATGGAGCTATTTGTCGTAGTCCAACTTGCTTATTCTTAGATTCTTATGTTTCAGGTTAGGCGTTTCAAGAAATTACTACAAAAGGCTGATACTGATTCTTGCCCCGTTCATTCCTTACCTTCCAGTTCAATTGAGTTGCTCCAGCCTACCTATGTCTCTGGTAACACCTCGTCCCTTTTGACAATTTGGAAAAAAACTGCTCTAACTAGCCCAAGTAATTGAAATTGTTGGGCTCCATATTCCTTTGGTCCGTGCATCAAATCGACTCTGCTCTTTTCTCATTATCCAAAAGCAAAGAGGCTGCAGGGTTAATTTGTTGGGAAGGATGTGTTGTTTTCAGTCAAGCTATTTCATCAATAAATAAATAATCATCTATTATTTTTATTCATACAAATGTTTTCTGAATGTTTTTCTCATTTTGATTCTTAATGATTAACAGCCCTAGAGAAATTGAAGGAAAAGGTTGAATCAGAAACATCCAGAAAAAGCACAATCATGTCTTCATCAAGAGCCGGGAAACGAAAAGATATGAACTCCTCCAAAGGAAAGGTTGGTATTAACAAACAAGCTCCTATGAGAGATTAGTGTCCCATTTTGTTACATATGAAAAACATCTTGAATGAATATTGTGGCCGTGCTGGGAAGATTAAATGGCAGGCTTGATTTAATGTGTCACCATCTTAAAACAAGAACACTACTAAGGGACTGAATGACAGCATTCTTATGCACTAGAACATTACAAATTCCCCATTTTTAAACTCGACTAAATGTTTTACTAATGGACTGCCATTAGTTAAAACAAAAACACAACTAATGGCTTGATTTAAATGTTTGACCATCTTAAAACAAACACACTACTAATGGACTGAATGACAGTTTCCTTATGCATTAGAAAATTACAAATTCCCCATTTCAAACTCGACTGGACTAACTATACACATGGTTGCATTACAGGCTTAGCAAGTTCACTGGAAACCGTGCAAGTACAAATTTCCGGGACTCGGTCTACAAGGACATGAAAATTCAACTACAGGAGATGACGATGAAGCCTTCTATAAGGCCATTATTATTCACTCGAGACTACAAATTCAATCACTGAATTTGGAGAAAGATCTACTTATGTTTCTGACGAAATGCATTGAATTGGCACCAACAGCCATAGACGCAGGGGTAGTTGATGATGTTAGGCTCCTTGGGGATGCAGCAGGATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTGTCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATCTGCGGTGGTGCGACCTCGGTAACGAACCTTGCTATACGAGAATTTGCCATTTTGTTTTGGGGTTTGGGTGTTGGAGGATGA

mRNA sequence

AATTAGCCAAGTTCTGTCTAAAACCCTAACGCTGTGCCTGTGGGGGGTTTAGATTCTGAAGCTGTGTTTGTTAGACAATGGCGGAGAAGCAGAAGCAGAAGCGAAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTCTAATTGAGGAATGCCCCCTTGAGATCCTCCCTCTGCTCGACCCCAGATTGAAGGTAGCTTTGCAGAACATGGGCATCTCTTCACTGTTCCCAGTGCAACTCGCAGTTTGGCAAGAGGCAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTAGTTGTGCTGCCTACTCGTGATCTGGCCTTGCAGGTTAAAGAGGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCCGTTGGTCAGTCTTCCATAGCGGATGAGATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGACAGGTATCTGTTACGATCCAGAAGATTTTTCGGCTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGACTGATGGACCATATTAACTTCACGAAGGGATTTACTCTTCAGCATCTACGTTATCTTGTTATTGATGAGACCGATAGGTTATTAAGGGAAGCATATCAATCTTGGCTACCTACTGTGCTTCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACATCCTTGTTCGGCTGGATCCTTGAAAACCATAAGGAGATTTGCTGACTGCATCTACTGTTTGGATTCATGTAGTGGTGTCGAGAGGGGTTTTAAGGGTAAACCTTACCCAAGGCTTGCAAAGATGGTTCTATCTGCAACGCTTACACAGGATCCAGGCAAGCTTGCTCAGCTTGATCTGCATCACCCTCTATTATTAACAACTGGGAAAAGAAGATATAAACTTCCGGAGAAATTAGAATCATACATGATGATTTGTGAATCAAAACTCAAACCATTAAATCTGGTTGCCCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCCGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGACGGCTTGGAACTCAGGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAATACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTGAGGGTGTGAAAAATGTTAGGCGTTTCAAGAAATTACTACAAAAGGCTGATACTGATTCTTGCCCCGTTCATTCCTTACCTTCCAGTTCAATTGAGTTGCTCCAGCCTACCTATGTCTCTGCCCTAGAGAAATTGAAGGAAAAGGTTGAATCAGAAACATCCAGAAAAAGCACAATCATGTCTTCATCAAGAGCCGGGAAACGAAAAGATATGAACTCCTCCAAAGGAAAGGTTGGAGATGACGATGAAGCCTTCTATAAGGCCATTATTATTCACTCGAGACTACAAATTCAATCACTGAATTTGGAGAAAGATCTACTTATGTTTCTGACGAAATGCATTGAATTGGCACCAACAGCCATAGACGCAGGGGTAGTTGATGATGTTAGGCTCCTTGGGGATGCAGCAGGATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTGTCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATCTGCGGTGGTGCGACCTCGGTAACGAACCTTGCTATACGAGAATTTGCCATTTTGTTTTGGGGTTTGGGTGTTGGAGGATGA

Coding sequence (CDS)

ATGGCGGAGAAGCAGAAGCAGAAGCGAAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTCTAATTGAGGAATGCCCCCTTGAGATCCTCCCTCTGCTCGACCCCAGATTGAAGGTAGCTTTGCAGAACATGGGCATCTCTTCACTGTTCCCAGTGCAACTCGCAGTTTGGCAAGAGGCAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTAGTTGTGCTGCCTACTCGTGATCTGGCCTTGCAGGTTAAAGAGGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCCGTTGGTCAGTCTTCCATAGCGGATGAGATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGACAGGTATCTGTTACGATCCAGAAGATTTTTCGGCTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGACTGATGGACCATATTAACTTCACGAAGGGATTTACTCTTCAGCATCTACGTTATCTTGTTATTGATGAGACCGATAGGTTATTAAGGGAAGCATATCAATCTTGGCTACCTACTGTGCTTCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACATCCTTGTTCGGCTGGATCCTTGAAAACCATAAGGAGATTTGCTGACTGCATCTACTGTTTGGATTCATGTAGTGGTGTCGAGAGGGGTTTTAAGGGTAAACCTTACCCAAGGCTTGCAAAGATGGTTCTATCTGCAACGCTTACACAGGATCCAGGCAAGCTTGCTCAGCTTGATCTGCATCACCCTCTATTATTAACAACTGGGAAAAGAAGATATAAACTTCCGGAGAAATTAGAATCATACATGATGATTTGTGAATCAAAACTCAAACCATTAAATCTGGTTGCCCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCCGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGACGGCTTGGAACTCAGGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAATACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTGAGGGTGTGAAAAATGTTAGGCGTTTCAAGAAATTACTACAAAAGGCTGATACTGATTCTTGCCCCGTTCATTCCTTACCTTCCAGTTCAATTGAGTTGCTCCAGCCTACCTATGTCTCTGCCCTAGAGAAATTGAAGGAAAAGGTTGAATCAGAAACATCCAGAAAAAGCACAATCATGTCTTCATCAAGAGCCGGGAAACGAAAAGATATGAACTCCTCCAAAGGAAAGGTTGGAGATGACGATGAAGCCTTCTATAAGGCCATTATTATTCACTCGAGACTACAAATTCAATCACTGAATTTGGAGAAAGATCTACTTATGTTTCTGACGAAATGCATTGAATTGGCACCAACAGCCATAGACGCAGGGGTAGTTGATGATGTTAGGCTCCTTGGGGATGCAGCAGGATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTGTCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATCTGCGGTGGTGCGACCTCGGTAACGAACCTTGCTATACGAGAATTTGCCATTTTGTTTTGGGGTTTGGGTGTTGGAGGATGA

Protein sequence

MAEKQKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKNVRRFKKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESETSRKSTIMSSSRAGKRKDMNSSKGKVGDDDEAFYKAIIIHSRLQIQSLNLEKDLLMFLTKCIELAPTAIDAGVVDDVRLLGDAAGYSFLLHSLSSSLMVSNTFDVRRLMTLIICGGATSVTNLAIREFAILFWGLGVGG
Homology
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BLAST of Lsi01G001250 vs. Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3)

HSP 1 Score: 581.6 bits (1498), Expect = 9.7e-165
Identity = 309/475 (65.05%), Postives = 364/475 (76.63%), Query Frame = 1 

Query: 1   MAEKQKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLA 60
           M   ++ K +   V+PWMR+PVDVS +E C L+ LP L+P+LK AL+NMGISSLFPVQ+A
Sbjct: 1   MGRDKEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVA 60

Query: 61  VWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQV 120
           VW E IGPG F+RD+C+NSPTGSGKTL+YALPIVQ+L+SR V+CLRALVVLPTRDLALQV
Sbjct: 61  VWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 120

Query: 121 KEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILV 180
           K+VF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+ GICYDP+D S  L+S+VDILV
Sbjct: 121 KDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILV 180

Query: 181 ATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSY 240
           ATPGRLMDHIN TKGFTL+HLRYLV+DETDRLLREAYQSWLPTVLQLT   DDS +FPS+
Sbjct: 181 ATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDS-LFPSF 240

Query: 241 ISH-PCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQ 300
               P + GSL+T+RR             VERGFKGKPYPRL KMVLSATLTQDP KL Q
Sbjct: 241 TPFVPSAFGSLQTVRR-----------QSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 300

Query: 301 LDLHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVEST 360
           LDLHHPL +TTG  RY+LPEKLE   +ICE+ +KP+ LVALL+S  GEKCI+FTSSVE+T
Sbjct: 301 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 360

Query: 361 HRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVK 420
            RLC LLNFF   +++ KEYSG   QSLRSK L AFR G+IQ+LV+SDA+TRGMDV+GV 
Sbjct: 361 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 420

Query: 421 NVRRF------KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET 469
           NV  +      K  + +A   +    +       LL    V    KL EKV S++
Sbjct: 421 NVINYDMPPFAKTFIHRAGRTARAGQA--GRCFTLLSNHEVRRFSKLLEKVGSDS 461

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BLAST of Lsi01G001250 vs. Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 4.0e-142
Identity = 280/511 (54.79%), Postives = 357/511 (69.86%), Query Frame = 1 

Query: 1   MAEKQKQKRKS--IPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQ 60
           MA K+++   S  +P LPWMR+PVD+     CP+  LP LDPRL   LQ MGI S FPVQ
Sbjct: 5   MATKEEEGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQ 64

Query: 61  LAVWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLAL 120
           +A W E IGPG+F+RD+CINSPTGSGKTLAYALPIVQML++R V+CLRALVVLPTRDLAL
Sbjct: 65  VAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLAL 124

Query: 121 QVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDI 180
           QVKEVF AIAP VGLSVG AVGQSSIADE+S LI++ K       D E    E Q+ VDI
Sbjct: 125 QVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDI 184

Query: 181 LVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDD----S 240
           LVATPGRLMDHI+ TKGF+L+HL+YLV+DETDR+LREAYQSWLPTV+QLT + D     S
Sbjct: 185 LVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWS 244

Query: 241 IIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDP 300
            +    + HP     L TIRR           SGVERGFKGK +PRLAK+VLSATLTQDP
Sbjct: 245 DMNGETLLHP-----LTTIRR-----------SGVERGFKGKSFPRLAKIVLSATLTQDP 304

Query: 301 GKLAQLDLHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTS 360
            KL+QL+L HPLLL +GK+RY++P KL+SY ++C+S LKPL+L+ LLQ L GEKC+VFTS
Sbjct: 305 SKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTS 364

Query: 361 SVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMD 420
           SVES+HRL +LL FF+ L  +  EYS LQR+S R KTL+AF+ G+I +L+ +D M RG+ 
Sbjct: 365 SVESSHRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIH 424

Query: 421 VEGVKNVRRF------KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET 480
           ++G++ V  +      K  + +A   +    S   S    L+   V A +K+ +K ++ +
Sbjct: 425 IDGLRYVINYDMPPYVKTYIHRAGRTARAGES--GSCFTFLRKHEVKAFDKMLKKADNSS 484

Query: 481 SRKSTIMSSSRAGKRKDMNSSKGKVGDDDEA 500
               ++   S    R   +S+  K+ +  E+
Sbjct: 485 CSLHSLPEESVETLRPVFSSALKKLEESLES 497

[Close]
BLAST of Lsi01G001250 vs. Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 242.7 bits (618), Expect = 1.1e-62
Identity = 165/445 (37.08%), Postives = 238/445 (53.48%), Query Frame = 1 

Query: 5   QKQKRKSIPVLP-WMRSP--VDVSLIEEC-PLEILPLLDPRLKVALQNMGISSLFPVQLA 64
           +++  K  P LP W+  P  V  ++ E+  P+E +P + P L+  L+  GISS FPVQ A
Sbjct: 168 KRKAPKVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAA 227

Query: 65  VWQEA---------IGPGSF-DRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVV 124
           V             +G G +   DLC+++PTGSGKTLA+ +P+VQ L SR V  +RALVV
Sbjct: 228 VIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVV 287

Query: 125 LPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSA 184
           LPT++LA QV +VF     A  L V L  GQ S+A E   L+++              + 
Sbjct: 288 LPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQKT-------------AD 347

Query: 185 ELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHA 244
             +   DI+VATPGRL+DHI+ T GF+LQ LR+L+IDE DR++   +QSWLP V+     
Sbjct: 348 GYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFQ 407

Query: 245 DDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATL 304
            +D        + PC+       RR A  +    +C          P   L K++ SATL
Sbjct: 408 SEDP-------ADPCAL----LQRRQAQAVTAASTCC---------PQMPLQKLLFSATL 467

Query: 305 TQDPGKLAQLDLHHPLLLTTG--------------KRRYKLPEKLESYMMICESKLKPLN 364
           TQ+P KL QL LH P L +TG                +Y  P  L  + + C    KPL 
Sbjct: 468 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 527

Query: 365 LVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFR 422
           ++ L+  +G  + + FT+S E++HRL  L+  F G++  + E+S       R   L  F 
Sbjct: 528 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVD--VAEFSSRYGPGQRRMILKQFE 577

[Close]
BLAST of Lsi01G001250 vs. Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-60
Identity = 163/448 (36.38%), Postives = 230/448 (51.34%), Query Frame = 1 

Query: 4   KQKQKRKSIPVLP-WMRSP------VDVSLIEECPLEILPLLDPRLKVALQNMGISSLFP 63
           K+K  +K   VLP W+  P      +  +LI   P+  +P + P L   LQ  GI S FP
Sbjct: 158 KEKDVQKVKRVLPQWLSQPDVIQKDIKSNLI---PISEVPGICPTLLRKLQTNGIQSFFP 217

Query: 64  VQLAVWQEA---------IGPGSF-DRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLR 123
           VQ  V             +GPG +  RD+C+++PTGSGKTLA+ +P+VQ LS R V+ +R
Sbjct: 218 VQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVR 277

Query: 124 ALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPE 183
           AL VLPT++LA QV  VF+A      L V +  GQ S A E + L    ++  G+ +   
Sbjct: 278 ALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH--- 337

Query: 184 DFSAELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQ 243
                  S  DI+VATPGRL+DHIN    F+LQHLR+L+IDE DR++   +QSWL  V +
Sbjct: 338 -------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTK 397

Query: 244 LTHA---DDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAK 303
             ++   +  + +F   +  P +A SL                          P   L K
Sbjct: 398 AVYSTPGETHTSVFRRTVPGPITAASLSP------------------------PQIPLQK 457

Query: 304 MVLSATLTQDPGKLAQLDLHHPLLLTT----------GKRRYKLPEKLESYMMICESKLK 363
           ++ SATLTQ+P KL  LDLH P L ++           +  +  P+ L  Y + C    K
Sbjct: 458 LLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKK 517

Query: 364 PLNLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLN 422
           PL ++  L  L     + FT+S E  HRL  L+  F G+E  + E+S       R KTL 
Sbjct: 518 PLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFGGVE--VAEFSSKLSPGERQKTLK 563

[Close]
BLAST of Lsi01G001250 vs. Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.6e-58
Identity = 160/446 (35.87%), Postives = 230/446 (51.57%), Query Frame = 1 

Query: 5   QKQKRKSIPVLP-WMRSP--VDVSLIEEC-PLEILPLLDPRLKVALQNMGISSLFPVQLA 64
           +++  K  P LP W+  P  V  S+ E+  P+E +P + P L+  L+  GI+S FPVQ A
Sbjct: 140 RRKTPKVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAA 199

Query: 65  VWQEA---------IGPGSFD-RDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVV 124
           V             IG G +   DLC+++PTGSGKTLA+ +P+VQ L  R V  +RALVV
Sbjct: 200 VIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVV 259

Query: 125 LPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSA 184
           LPT++LA QV +VF        L V L  GQ S+A E   L+++              + 
Sbjct: 260 LPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQKT-------------AD 319

Query: 185 ELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHA 244
             +   DI+VATPGRL+DHI+ T GF+LQ LR+L+IDE DR++   +QSWLP V+     
Sbjct: 320 GFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAF- 379

Query: 245 DDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATL 304
                    Y   P  + +L   R     +    +C          P   L K++ SATL
Sbjct: 380 ---------YSEGPTGSCALLQ-RTQPQALTAASTC---------VPQMPLQKLLFSATL 439

Query: 305 TQDPGKLAQLDLHHPLLLTT---------------GKRRYKLPEKLESYMMICESKLKPL 364
           TQDP KL +L L+ P L +T                  +Y  P  L  + + C    KPL
Sbjct: 440 TQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPL 499

Query: 365 NLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAF 422
            ++ L+  +   + + FT+S E++HRL  L   F G+   + E+S       R K L  F
Sbjct: 500 IVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGGVS--VAEFSSRYGPGQRKKILKQF 550

[Close]
BLAST of Lsi01G001250 vs. TrEMBL
Match: A0A0A0KNZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 3.5e-214
Identity = 412/526 (78.33%), Postives = 431/526 (81.94%), Query Frame = 1 

Query: 6   KQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEA 65
           KQKRK IPVLPWMRSPVDVSLIEECPLEILP+LD RLK ALQNMGISSLFPVQLAVWQEA
Sbjct: 4   KQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQEA 63

Query: 66  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFT 125
           IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF+
Sbjct: 64  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFS 123

Query: 126 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGR 185
           AIAPAVGLSVGLAVGQSSIADEISELIKRPKLE GICYDP+DF  ELQSSVDILVATPGR
Sbjct: 124 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPGR 183

Query: 186 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPC 245
           LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS+PC
Sbjct: 184 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPC 243

Query: 246 SAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP 305
           S GSLKTIRRF           GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP
Sbjct: 244 SDGSLKTIRRF-----------GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP 303

Query: 306 LLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSL 365
           L LTTGKRRYKLPEKLESYMMICESKLKPL LVALLQSLG EKCIVFTSSVESTHRLCSL
Sbjct: 304 LFLTTGKRRYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSL 363

Query: 366 LNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKNVRRF- 425
           LNFF+ LEL+IKEYSGLQRQSLRSKTLNAFRGGEIQ+LVSSDAMTRGMDVEGVKNV  + 
Sbjct: 364 LNFFEDLELKIKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINYD 423

Query: 426 -----KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET----------- 485
                K  + +A   +    S       LL+   V   +KL +K ++++           
Sbjct: 424 MPAFIKTYIHRAGRTARAGQS--GRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLPSSSI 483

Query: 486 -------------------SRKS---TIMSSSRAGKRKDMNSSKGK 493
                              S  S   TI SSSRAGK+KD NSSK K
Sbjct: 484 EFLQPTYVSALEKLKEKVESETSRKSTITSSSRAGKQKDRNSSKAK 516

[Close]
BLAST of Lsi01G001250 vs. TrEMBL
Match: B9H0T9_POPTR (DEAD/DEAH box helicase family protein OS=Populus trichocarpa GN=POPTR_0004s16530g PE=4 SV=1)

HSP 1 Score: 689.9 bits (1779), Expect = 2.8e-195
Identity = 365/514 (71.01%), Postives = 413/514 (80.35%), Query Frame = 1 

Query: 7   QKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEAI 66
           ++ K++PVLPWMRSPVDVS  EE PL+ILP LDPRLK+ALQNMG  +LFPVQ+AVWQE I
Sbjct: 8   KQNKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQIAVWQETI 67

Query: 67  GPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTA 126
           GPG+F+RDLCINSPTGSGKTLAYALPIVQ+LS+RAVKCLRALVVLPTRDLALQVK+VF A
Sbjct: 68  GPGAFERDLCINSPTGSGKTLAYALPIVQLLSTRAVKCLRALVVLPTRDLALQVKQVFAA 127

Query: 127 IAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGRL 186
           IAPA+GLSVGLAVGQSSIADEISELIK+P+ E GICYDP+D   ELQSSVDILVATPGRL
Sbjct: 128 IAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQELQSSVDILVATPGRL 187

Query: 187 MDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCS 246
           MDHI  TKGFTL+HL YLV+DETDRLLRE+YQSWLPTVL+LT   D+S++       PC+
Sbjct: 188 MDHITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLTRPYDESLVPGVNNFLPCA 247

Query: 247 AGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPL 306
           +GSLKTIRR            GVERGFKGK YPRLAKMVLSATLTQDP KLAQL+LHHPL
Sbjct: 248 SGSLKTIRR-----------CGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNLHHPL 307

Query: 307 LLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSLL 366
            LTTG+RRY+LPEKLESY +IC SKLKPL LVA+LQ LGGEKCIVFTSSVESTHRLC+LL
Sbjct: 308 FLTTGQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLL 367

Query: 367 NFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGV-------- 426
           NFF  L+++IKEYSGLQRQS+RSKTL AFR GEIQ+LVSSDAMTRGMD+EGV        
Sbjct: 368 NFFGDLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDM 427

Query: 427 -----------------------------KNVRRFKKLLQKADTDSCPVHSLPSSSIELL 483
                                          V+RFKKLLQKAD DSCP++S+PSSS++ L
Sbjct: 428 PAYVKTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIPSSSVKSL 487

[Close]
BLAST of Lsi01G001250 vs. TrEMBL
Match: K4CB60_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 7.0e-186
Identity = 353/518 (68.15%), Postives = 407/518 (78.57%), Query Frame = 1 

Query: 6   KQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEA 65
           K+++K+IPVLPWMR+PVD++  ++C L++LP +DPRL  AL+NM I+SLFPVQLAVWQE 
Sbjct: 8   KKEKKNIPVLPWMRNPVDITTFDQCSLDLLPFIDPRLVAALKNMSITSLFPVQLAVWQET 67

Query: 66  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFT 125
           IGPGSF+RDLCINSPTGSGKTLAYALPIVQMLS+RAVKCLRALVVLPTRDLALQVKEVF+
Sbjct: 68  IGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRAVKCLRALVVLPTRDLALQVKEVFS 127

Query: 126 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGR 185
           A+APAVGLSVGLAVGQSSI+DEISELIK+P +E GICYDPE+FS ELQS+VDILVATPGR
Sbjct: 128 ALAPAVGLSVGLAVGQSSISDEISELIKKPNVEYGICYDPEEFSYELQSAVDILVATPGR 187

Query: 186 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISH-P 245
           LMDHIN T GFTL+HL YLV+DETDRLLREAYQSWLPTV+QLT +  D   FPS  +  P
Sbjct: 188 LMDHINNTNGFTLEHLSYLVVDETDRLLREAYQSWLPTVIQLTSSSVDGN-FPSVANLLP 247

Query: 246 CSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHH 305
           C+ GSLKTIRR            G ERGFKGK YPRLAKMVLSATLTQDP KLAQLDLHH
Sbjct: 248 CTYGSLKTIRRM-----------GTERGFKGKAYPRLAKMVLSATLTQDPSKLAQLDLHH 307

Query: 306 PLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCS 365
           PLLLTTG+RRYKLPE+L+S+ ++C+SKLKPL LV+LLQSL GEK IVFTSSVESTHRLC+
Sbjct: 308 PLLLTTGERRYKLPEELKSFKVLCQSKLKPLYLVSLLQSLQGEKSIVFTSSVESTHRLCT 367

Query: 366 LLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVE-------- 425
           LL FFD L++  KEYS LQRQS+RSKTL AFR G++Q+L+SSDAMTRGMDVE        
Sbjct: 368 LLKFFDNLQIEFKEYSRLQRQSVRSKTLRAFRSGQVQVLISSDAMTRGMDVEGVRNVINY 427

Query: 426 -------------------GVKN----------VRRFKKLLQKADTDSCPVHSLPSSSIE 485
                              G+            V+RFKK+LQKAD +SCP +S  S  IE
Sbjct: 428 DMPAYIKTFIHRAGRTARAGLSGCCFTLMHKDEVKRFKKMLQKADCNSCPTYSASSEVIE 487

[Close]
BLAST of Lsi01G001250 vs. TrEMBL
Match: W9R784_9ROSA (DEAD-box ATP-dependent RNA helicase 1 OS=Morus notabilis GN=L484_011439 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 1.3e-184
Identity = 334/419 (79.71%), Postives = 365/419 (87.11%), Query Frame = 1 

Query: 3   EKQKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVW 62
           E+QK+K++ + VLPWMRSPVDVSL EECPL ++P LDPRLKVALQNMG +SLFPVQ+AVW
Sbjct: 2   EEQKEKQEKVLVLPWMRSPVDVSLFEECPLSLVPCLDPRLKVALQNMGFASLFPVQVAVW 61

Query: 63  QEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKE 122
           QE IGPGSF+RDLC+NSPTGSGKTLAYALPIVQ LS+RAVKCLRALVVLPTRDLALQVKE
Sbjct: 62  QETIGPGSFERDLCVNSPTGSGKTLAYALPIVQALSTRAVKCLRALVVLPTRDLALQVKE 121

Query: 123 VFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVAT 182
           +F+ IAPAVGLSVGLAVGQSSIADEISEL+KRPKLE GICYDPEDFS  L SSVDILVAT
Sbjct: 122 IFSVIAPAVGLSVGLAVGQSSIADEISELVKRPKLEAGICYDPEDFSLGLPSSVDILVAT 181

Query: 183 PGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYIS 242
           PGRLMDHIN TKGFTL+HL YLV+DETDRLLREAYQSWLPTVL LT  +D+     ++  
Sbjct: 182 PGRLMDHINSTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLHLTRFNDEGFFPRAHTF 241

Query: 243 HPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDL 302
            P S GSLKTIRR           SGVERGFKGKPYPRL K+VLSATLTQDP KL+QL L
Sbjct: 242 LPSSLGSLKTIRR-----------SGVERGFKGKPYPRLVKIVLSATLTQDPSKLSQLAL 301

Query: 303 HHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRL 362
           HHPL LTTGKRRY+LPEKLESY ++CE+KLKPL LVALLQ LGGEKCIVFTSSVESTHRL
Sbjct: 302 HHPLFLTTGKRRYQLPEKLESYKLMCETKLKPLYLVALLQKLGGEKCIVFTSSVESTHRL 361

Query: 363 CSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKNV 422
           C+LLNFFD L   IKEYSGLQRQS+RSKTL  FR G+IQ+LVSSDAMTRGMDVEGVK V
Sbjct: 362 CTLLNFFDDLPFIIKEYSGLQRQSVRSKTLKGFREGQIQVLVSSDAMTRGMDVEGVKYV 409

[Close]
BLAST of Lsi01G001250 vs. TrEMBL
Match: M1C3V3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022975 PE=4 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 2.2e-184
Identity = 349/517 (67.50%), Postives = 403/517 (77.95%), Query Frame = 1 

Query: 6   KQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEA 65
           K+++K+IPVLPWMR+PVD++  ++C + +LP +DPRL  AL+NM I+SLFPVQLAVWQE 
Sbjct: 8   KKEKKNIPVLPWMRNPVDITTFDQCSVVLLPFIDPRLVAALKNMSITSLFPVQLAVWQET 67

Query: 66  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFT 125
           IGPGSF+RDLCINSPTGSGKT+AYALPIVQMLS+RAVKCLRALVVLPTRDLALQVKEVF+
Sbjct: 68  IGPGSFERDLCINSPTGSGKTIAYALPIVQMLSTRAVKCLRALVVLPTRDLALQVKEVFS 127

Query: 126 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGR 185
           A+APAVGLSVGLAVGQSSI+DEISELIK+P +E GICYDPE+FS ELQS+V ILVATPGR
Sbjct: 128 ALAPAVGLSVGLAVGQSSISDEISELIKKPNVEYGICYDPEEFSYELQSAVGILVATPGR 187

Query: 186 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPC 245
           LMDHIN T GFTL+HL YLV+DETDRLLREAYQSWLPTV+QLT +  D     S    PC
Sbjct: 188 LMDHINNTDGFTLEHLSYLVVDETDRLLREAYQSWLPTVIQLTSSSVDGNFPSSADLLPC 247

Query: 246 SAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP 305
           + GSLKTIRR            G ERGFKGK YPRLAKMVLSATLTQDP KLAQLDLHHP
Sbjct: 248 TYGSLKTIRRM-----------GTERGFKGKAYPRLAKMVLSATLTQDPSKLAQLDLHHP 307

Query: 306 LLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSL 365
           LLLTTG+RRYKLPE+L+S+ ++C+SKLKPL LV+LLQSL GEK IVFTSSVESTHRLC+L
Sbjct: 308 LLLTTGERRYKLPEELKSFKVLCQSKLKPLYLVSLLQSLQGEKSIVFTSSVESTHRLCTL 367

Query: 366 LNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVE--------- 425
           L FFD L++  KEYS LQRQS+RSKTL AFR G++Q+L+SSDAMTRGMDVE         
Sbjct: 368 LKFFDNLQIEFKEYSRLQRQSVRSKTLRAFRSGQVQVLISSDAMTRGMDVEGVRNVINYD 427

Query: 426 ------------------GVKN----------VRRFKKLLQKADTDSCPVHSLPSSSIEL 485
                             G+            V+RFKK+LQKAD +SCP +S  S  IE 
Sbjct: 428 MPAYIKTFIHRAGRTARAGLSGCCFTLMHKDEVKRFKKMLQKADCNSCPTYSASSEVIES 487

[Close]
BLAST of Lsi01G001250 vs. TAIR10
Match: AT4G15850.1 (AT4G15850.1 RNA helicase 1)

HSP 1 Score: 581.6 bits (1498), Expect = 5.5e-166
Identity = 309/475 (65.05%), Postives = 364/475 (76.63%), Query Frame = 1 

Query: 1   MAEKQKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLA 60
           M   ++ K +   V+PWMR+PVDVS +E C L+ LP L+P+LK AL+NMGISSLFPVQ+A
Sbjct: 1   MGRDKEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVA 60

Query: 61  VWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQV 120
           VW E IGPG F+RD+C+NSPTGSGKTL+YALPIVQ+L+SR V+CLRALVVLPTRDLALQV
Sbjct: 61  VWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 120

Query: 121 KEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILV 180
           K+VF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+ GICYDP+D S  L+S+VDILV
Sbjct: 121 KDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILV 180

Query: 181 ATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSY 240
           ATPGRLMDHIN TKGFTL+HLRYLV+DETDRLLREAYQSWLPTVLQLT   DDS +FPS+
Sbjct: 181 ATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDS-LFPSF 240

Query: 241 ISH-PCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQ 300
               P + GSL+T+RR             VERGFKGKPYPRL KMVLSATLTQDP KL Q
Sbjct: 241 TPFVPSAFGSLQTVRR-----------QSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 300

Query: 301 LDLHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVEST 360
           LDLHHPL +TTG  RY+LPEKLE   +ICE+ +KP+ LVALL+S  GEKCI+FTSSVE+T
Sbjct: 301 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 360

Query: 361 HRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVK 420
            RLC LLNFF   +++ KEYSG   QSLRSK L AFR G+IQ+LV+SDA+TRGMDV+GV 
Sbjct: 361 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 420

Query: 421 NVRRF------KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET 469
           NV  +      K  + +A   +    +       LL    V    KL EKV S++
Sbjct: 421 NVINYDMPPFAKTFIHRAGRTARAGQA--GRCFTLLSNHEVRRFSKLLEKVGSDS 461

[Close]
BLAST of Lsi01G001250 vs. TAIR10
Match: AT5G60990.1 (AT5G60990.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-22
Identity = 102/358 (28.49%), Postives = 143/358 (39.94%), Query Frame = 1 

Query: 73  RDLCINSPTGSGKTLAYALPIVQML-----------SSRAVKCLRALVVLPTRDLALQVK 132
           +D+   + TGSGKT A+A+PI+Q L             R      A V+ PTR+LA+Q+ 
Sbjct: 47  KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106

Query: 133 EVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVA 192
           E F A+   + L   + VG      +   L KRP                      ++VA
Sbjct: 107 EQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH---------------------VIVA 166

Query: 193 TPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYI 252
           TPGRL DH++ TKGF+L+ L+YLV+DE DRLL E ++  L  +L+    +  + +F    
Sbjct: 167 TPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF---- 226

Query: 253 SHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLD 312
               SA   K +R+      CL +   +E   K      L +             L    
Sbjct: 227 ----SATMTKKVRKLQRA--CLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLV--- 286

Query: 313 LHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVAL-LQSLGGEKCIVFTSSVESTH 372
                        Y L E  ES  MI          +AL L+SLG               
Sbjct: 287 -------------YILSEMPESTSMIFTRTCDGTRFLALVLRSLG--------------- 329

Query: 373 RLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGV 419
                         R    SG   QS R   LN F+ GE  ILV +D  +RG+D+  V
Sbjct: 347 -------------FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSV 329

[Close]
BLAST of Lsi01G001250 vs. TAIR10
Match: AT4G16630.1 (AT4G16630.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 99.4 bits (246), Expect = 8.2e-21
Identity = 98/389 (25.19%), Postives = 170/389 (43.70%), Query Frame = 1 

Query: 35  LPLLDPRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIV 94
           L L  P L+ A + +G     P+Q A    A+      RDLC ++ TGSGKT A+ALP +
Sbjct: 172 LNLSRPLLR-ACETLGYKKPTPIQAACIPLALT----GRDLCASAITGSGKTAAFALPTL 231

Query: 95  QMLSSR--AVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELI 154
           + L  R   V   R L++ PTR+LA+Q+  +   +A    +  GL VG  S+ ++     
Sbjct: 232 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ----- 291

Query: 155 KRPKLETGICYDPEDFSAELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRL 214
                              L+S  DI+VATPGR++DH+  +    L  L  L++DE DRL
Sbjct: 292 ----------------EVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 351

Query: 215 LREAYQSWLPTVLQLTHADDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERG 274
           L+  + + +  +++L      +++F + ++       +K + + +     L+    +   
Sbjct: 352 LQTGFATEITELVRLCPKRRQTMLFSATMTE-----EVKELVKLS-----LNKPLRLSAD 411

Query: 275 FKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLLLTTGKRRYKLPEKLESYMMICESKL 334
              +  P L + V+    T++  + A       +LL+   R +K      S ++I     
Sbjct: 412 PSARRPPGLTEEVVRIRRTREANQEA-------VLLSLCTRTFK------SKVIIFSGTK 471

Query: 335 KPLNLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTL 394
           +  + + +L  L G K      ++    RL       D LEL                  
Sbjct: 472 QAAHRLKILFGLAGLKAAELHGNLTQAQRL-------DSLEL------------------ 484

Query: 395 NAFRGGEIQILVSSDAMTRGMDVEGVKNV 422
             FR  E+  L+++D   RG+D+ GV+ V
Sbjct: 532 --FRKQEVDFLIATDVAARGLDIIGVQTV 484

[Close]
BLAST of Lsi01G001250 vs. TAIR10
Match: AT5G08620.1 (AT5G08620.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-17
Identity = 96/376 (25.53%), Postives = 158/376 (42.02%), Query Frame = 1 

Query: 59  LAVWQEAIGPGSFD-RDLCINSPTGSGKTLAYALPIVQML-----SSRAVKC--LRALVV 118
           + V QEA  P     +D+   + TG+GKT+A+ LP ++ +     +SR  +   +  LVV
Sbjct: 103 MTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVV 162

Query: 119 LPTRDLALQVK---EVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPED 178
            PTR+LA Q      +     P++G+ V   +G + +  E   L K P            
Sbjct: 163 CPTRELACQAAAEANILLKYHPSIGVQV--VIGGTKLPTEQRRLQKSP------------ 222

Query: 179 FSAELQSSVDILVATPGRLMDHINFTKGFT--LQHLRYLVIDETDRLLREAYQSWLPTVL 238
                     ILVATPGRL DHI+ T GF   L  ++ LV+DE D LL   ++  +  ++
Sbjct: 223 --------CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERII 282

Query: 239 QLTHADDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMV 298
                   + +F + +S          ++R  + + C      V+ G  G+ + ++++M 
Sbjct: 283 AAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNC------VQEG-AGETHQKVSQMY 342

Query: 299 LSATLTQDPGKLAQLDLHHPLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLG 358
           +          +A LD H  LL    K+                           +    
Sbjct: 343 M----------IASLDRHFSLLYGLLKKH--------------------------ITDNV 402

Query: 359 GEKCIVFTSSVESTHRLCSLLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVS 418
           G K I+F ++   T  +  LL     L L ++E    + QS R++  + FR  +  ILV+
Sbjct: 403 GYKVIIFCTTAMVTRLVADLLG---KLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVT 410

Query: 419 SDAMTRGMDVEGVKNV 422
           SD   RG+D   V  V
Sbjct: 463 SDVSARGVDYPDVSLV 410

[Close]
BLAST of Lsi01G001250 vs. TAIR10
Match: AT2G33730.1 (AT2G33730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-17
Identity = 101/392 (25.77%), Postives = 161/392 (41.07%), Query Frame = 1 

Query: 38  LDPRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCINSPTGSGKTLAYALPIVQML 97
           L   L  A++  G     P+Q+A    AI  G   RD+   + TGSGKT A+ LP++  +
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMA----AIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 379

Query: 98  S-------SRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISE 157
           S           +   A+V+ PTR+LA Q++E     A  +G  V   VG  SI      
Sbjct: 380 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSI------ 439

Query: 158 LIKRPKLETGICYDPEDFSAELQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETD 217
                          E+   ++    +I++ATPGRL+D +   +   L    Y+V+DE D
Sbjct: 440 ---------------EEQGLKITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEAD 499

Query: 218 RLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCSAGSLKTIRRFADCIYCLDSCSGVE 277
           R++   ++   P V  +  A   S + P            K I R    ++      GVE
Sbjct: 500 RMIDMGFE---PQVAGVLDAMPSSNLKPENEEEELDE---KKIYR-TTYMFSATMPPGVE 559

Query: 278 RGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLLLTTGKRRYKLPEKLESYMMICES 337
           R    + Y R   +V   T     GK   L   H +++   ++ ++L +           
Sbjct: 560 R--LARKYLRNPVVVTIGT----AGKTTDLISQHVIMMKESEKFFRLQK----------- 619

Query: 338 KLKPLNLVALLQSLGGEKCIVFTSSVESTHRLC-SLLNFFDGLELRIKEYSGLQRQSLRS 397
                    LL  LG +  IVF     +T + C S+    D    R+    G + Q  R 
Sbjct: 620 ---------LLDELGEKTAIVFV----NTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQRE 648

Query: 398 KTLNAFRGGEIQILVSSDAMTRGMDVEGVKNV 422
            +L  FR     +LV++D + RG+D+  V +V
Sbjct: 680 ISLEGFRAKRYNVLVATDVVGRGIDIPDVAHV 648

[Close]
BLAST of Lsi01G001250 vs. NCBI nr
Match: gi|449433605|ref|XP_004134588.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus])

HSP 1 Score: 752.7 bits (1942), Expect = 5.1e-214
Identity = 412/526 (78.33%), Postives = 431/526 (81.94%), Query Frame = 1 

Query: 6   KQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEA 65
           KQKRK IPVLPWMRSPVDVSLIEECPLEILP+LD RLK ALQNMGISSLFPVQLAVWQEA
Sbjct: 4   KQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQEA 63

Query: 66  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFT 125
           IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF+
Sbjct: 64  IGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFS 123

Query: 126 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGR 185
           AIAPAVGLSVGLAVGQSSIADEISELIKRPKLE GICYDP+DF  ELQSSVDILVATPGR
Sbjct: 124 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPGR 183

Query: 186 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPC 245
           LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS+PC
Sbjct: 184 LMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPC 243

Query: 246 SAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP 305
           S GSLKTIRRF           GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP
Sbjct: 244 SDGSLKTIRRF-----------GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHP 303

Query: 306 LLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSL 365
           L LTTGKRRYKLPEKLESYMMICESKLKPL LVALLQSLG EKCIVFTSSVESTHRLCSL
Sbjct: 304 LFLTTGKRRYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSL 363

Query: 366 LNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKNVRRF- 425
           LNFF+ LEL+IKEYSGLQRQSLRSKTLNAFRGGEIQ+LVSSDAMTRGMDVEGVKNV  + 
Sbjct: 364 LNFFEDLELKIKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINYD 423

Query: 426 -----KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET----------- 485
                K  + +A   +    S       LL+   V   +KL +K ++++           
Sbjct: 424 MPAFIKTYIHRAGRTARAGQS--GRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLPSSSI 483

Query: 486 -------------------SRKS---TIMSSSRAGKRKDMNSSKGK 493
                              S  S   TI SSSRAGK+KD NSSK K
Sbjct: 484 EFLQPTYVSALEKLKEKVESETSRKSTITSSSRAGKQKDRNSSKAK 516

[Close]
BLAST of Lsi01G001250 vs. NCBI nr
Match: gi|659078198|ref|XP_008439599.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo])

HSP 1 Score: 750.4 bits (1936), Expect = 2.5e-213
Identity = 410/527 (77.80%), Postives = 431/527 (81.78%), Query Frame = 1 

Query: 5   QKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQE 64
           +KQKRK IPVLPWMRSPVDVSLIEECPLEILP+LD RLKVALQNMGISSLFPVQLAVWQE
Sbjct: 3   EKQKRKHIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKVALQNMGISSLFPVQLAVWQE 62

Query: 65  AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVF 124
           AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSR +KCLRALVVLPTRDLALQVKEVF
Sbjct: 63  AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTIKCLRALVVLPTRDLALQVKEVF 122

Query: 125 TAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPG 184
           +AIAPAVGLSVGLAVGQSSIADEISELIKRPKLE GICYDPED    LQSSVDILVATPG
Sbjct: 123 SAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLVALQSSVDILVATPG 182

Query: 185 RLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHP 244
           RLMDHINFTKGFTL+HLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS+P
Sbjct: 183 RLMDHINFTKGFTLKHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNP 242

Query: 245 CSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHH 304
           CSAGSLKTIRRF           GVERGFKGKPYPRLAKM+LSATLTQDPGKLAQLDLHH
Sbjct: 243 CSAGSLKTIRRF-----------GVERGFKGKPYPRLAKMILSATLTQDPGKLAQLDLHH 302

Query: 305 PLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCS 364
           PL LTTGKRRYKLPEKLESYMMICESKLKPL LVALLQSLG EKCIVFTSSVESTHRLCS
Sbjct: 303 PLFLTTGKRRYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCS 362

Query: 365 LLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKNVRRF 424
           LLNFF+ LEL+IKEYSGLQRQSLRSKTLNAFRGGEIQ+LVSSDAMTRGMDVEGVKNV  +
Sbjct: 363 LLNFFEDLELKIKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINY 422

Query: 425 ------KKLLQKADTDSCPVHSLPSSSIELLQPTYVSALEKLKEKVESET---------- 484
                 K  + +A   +    S       LL+   V   +KL +K ++++          
Sbjct: 423 DMPAFIKTYIHRAGRTARAGQS--GRCFTLLRKDEVKRFKKLLQKADNDSCPVHSLPSSS 482

Query: 485 --------------------SRKS---TIMSSSRAGKRKDMNSSKGK 493
                               S  S   TI  SSRAGKRKD NSSK K
Sbjct: 483 IEFLQPTYVSALEKLKEKVESETSRKSTITYSSRAGKRKDRNSSKAK 516

[Close]
BLAST of Lsi01G001250 vs. NCBI nr
Match: gi|743885160|ref|XP_011037480.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Populus euphratica])

HSP 1 Score: 694.1 bits (1790), Expect = 2.1e-196
Identity = 367/520 (70.58%), Postives = 416/520 (80.00%), Query Frame = 1 

Query: 7   QKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEAI 66
           +++K++PVLPWMRSPVDVS  EE PL+ILP LDPRLK+ALQNMG  +LFPVQ+AVWQE I
Sbjct: 8   KQKKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQIAVWQETI 67

Query: 67  GPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTA 126
           GPG+F+RDLCINSPTGSGKTLAYALPIVQMLS+RAVKCLRALVVLPTRDLALQVK+VF A
Sbjct: 68  GPGAFERDLCINSPTGSGKTLAYALPIVQMLSTRAVKCLRALVVLPTRDLALQVKQVFAA 127

Query: 127 IAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGRL 186
           IAPA+GLSVGLAVGQSSIADEISELIK+P+ E GICYDP+D   ELQSSVDILVATPGRL
Sbjct: 128 IAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVFQELQSSVDILVATPGRL 187

Query: 187 MDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCS 246
           MDHI  TKGFTL+HL YLV+DETDRLLREAYQSWLPTVL+LT   D+ ++       PC+
Sbjct: 188 MDHIATTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLKLTRPYDEGLVPGVNNFLPCA 247

Query: 247 AGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPL 306
           +GSLKTIRR            GVERGFKGK YPRLAKMVLSATLTQDP KLAQLDLHHPL
Sbjct: 248 SGSLKTIRR-----------CGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLDLHHPL 307

Query: 307 LLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSLL 366
            LTTG+RRY+LPEKLESY +IC SKLKPL LVA+LQ LGGEKCIVFTSSVESTHRLC+LL
Sbjct: 308 FLTTGQRRYQLPEKLESYKLICMSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLL 367

Query: 367 NFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGV-------- 426
           NFFD L+++IKEYSGLQRQS+RSKTL AFR GEIQ+LVSSDAMTRGMD+EGV        
Sbjct: 368 NFFDDLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDM 427

Query: 427 -----------------------------KNVRRFKKLLQKADTDSCPVHSLPSSSIELL 486
                                          V+RFKK+LQKAD DSCP++S+PSSS++ L
Sbjct: 428 PAYVKTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKMLQKADNDSCPIYSIPSSSVKSL 487

[Close]
BLAST of Lsi01G001250 vs. NCBI nr
Match: gi|743885158|ref|XP_011037479.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Populus euphratica])

HSP 1 Score: 694.1 bits (1790), Expect = 2.1e-196
Identity = 367/520 (70.58%), Postives = 416/520 (80.00%), Query Frame = 1 

Query: 7   QKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQEAI 66
           +++K++PVLPWMRSPVDVS  EE PL+ILP LDPRLK+ALQNMG  +LFPVQ+AVWQE I
Sbjct: 34  KQKKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQIAVWQETI 93

Query: 67  GPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTA 126
           GPG+F+RDLCINSPTGSGKTLAYALPIVQMLS+RAVKCLRALVVLPTRDLALQVK+VF A
Sbjct: 94  GPGAFERDLCINSPTGSGKTLAYALPIVQMLSTRAVKCLRALVVLPTRDLALQVKQVFAA 153

Query: 127 IAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPGRL 186
           IAPA+GLSVGLAVGQSSIADEISELIK+P+ E GICYDP+D   ELQSSVDILVATPGRL
Sbjct: 154 IAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVFQELQSSVDILVATPGRL 213

Query: 187 MDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCS 246
           MDHI  TKGFTL+HL YLV+DETDRLLREAYQSWLPTVL+LT   D+ ++       PC+
Sbjct: 214 MDHIATTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLKLTRPYDEGLVPGVNNFLPCA 273

Query: 247 AGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPL 306
           +GSLKTIRR            GVERGFKGK YPRLAKMVLSATLTQDP KLAQLDLHHPL
Sbjct: 274 SGSLKTIRR-----------CGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLDLHHPL 333

Query: 307 LLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCSLL 366
            LTTG+RRY+LPEKLESY +IC SKLKPL LVA+LQ LGGEKCIVFTSSVESTHRLC+LL
Sbjct: 334 FLTTGQRRYQLPEKLESYKLICMSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLL 393

Query: 367 NFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGV-------- 426
           NFFD L+++IKEYSGLQRQS+RSKTL AFR GEIQ+LVSSDAMTRGMD+EGV        
Sbjct: 394 NFFDDLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDM 453

Query: 427 -----------------------------KNVRRFKKLLQKADTDSCPVHSLPSSSIELL 486
                                          V+RFKK+LQKAD DSCP++S+PSSS++ L
Sbjct: 454 PAYVKTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKMLQKADNDSCPIYSIPSSSVKSL 513

[Close]
BLAST of Lsi01G001250 vs. NCBI nr
Match: gi|720089313|ref|XP_010244722.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Nelumbo nucifera])

HSP 1 Score: 692.2 bits (1785), Expect = 8.1e-196
Identity = 371/524 (70.80%), Postives = 417/524 (79.58%), Query Frame = 1 

Query: 5   QKQKRKSIPVLPWMRSPVDVSLIEECPLEILPLLDPRLKVALQNMGISSLFPVQLAVWQE 64
           +  K+KS+PVLPWMRSP+DVSL EECPL +LP LDPRL+ AL  MG+SSLFPVQ+AVWQE
Sbjct: 2   ENSKQKSVPVLPWMRSPIDVSLFEECPLNLLPCLDPRLEEALLKMGVSSLFPVQVAVWQE 61

Query: 65  AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVF 124
            IGPG+F+RDLCINSPTGSGKTLAYALPIVQMLS+R VKCLRALVVLPTRDLALQVKEVF
Sbjct: 62  TIGPGAFERDLCINSPTGSGKTLAYALPIVQMLSARTVKCLRALVVLPTRDLALQVKEVF 121

Query: 125 TAIAPAVGLSVGLAVGQSSIADEISELIKRPKLETGICYDPEDFSAELQSSVDILVATPG 184
           +AIAPAVGLSVGLAVGQ+SIADEIS+LIKRPKLE GICYDPE+   E Q++VDILVATPG
Sbjct: 122 SAIAPAVGLSVGLAVGQTSIADEISQLIKRPKLEAGICYDPEEIRVEFQTNVDILVATPG 181

Query: 185 RLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHP 244
           RLMDHIN TKGFTL+HL YLV+DETDRLLREAYQSWLPTVLQLT +++D + FPS  +  
Sbjct: 182 RLMDHINTTKGFTLEHLSYLVVDETDRLLREAYQSWLPTVLQLTCSNEDGL-FPSARTVT 241

Query: 245 CSAGSLKTIRRFADCIYCLDSCSGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHH 304
            + GSL+TIRR           +GVERGFK K YPR+ KM+LSATLTQDP KLAQLDLHH
Sbjct: 242 PTLGSLQTIRR-----------NGVERGFKDKTYPRVVKMILSATLTQDPSKLAQLDLHH 301

Query: 305 PLLLTTGKRRYKLPEKLESYMMICESKLKPLNLVALLQSLGGEKCIVFTSSVESTHRLCS 364
           PLLLTTG RRY+LPEKL+SY +ICESKLKPL LVALLQ L GEKCIVFTSSVESTHRL +
Sbjct: 302 PLLLTTGPRRYQLPEKLKSYKLICESKLKPLYLVALLQELKGEKCIVFTSSVESTHRLST 361

Query: 365 LLNFFDGLELRIKEYSGLQRQSLRSKTLNAFRGGEIQILVSSDAMTRGMDVEGVKN---- 424
           LLN F  L+L+IKEYSGLQRQS+RSKTLNAFR GE+Q+LVSSDAMTRGMDVEGV N    
Sbjct: 362 LLNAFGDLQLQIKEYSGLQRQSVRSKTLNAFRNGEVQVLVSSDAMTRGMDVEGVMNVINY 421

Query: 425 ---------------------------------VRRFKKLLQKADTDSCPVHSLPSSSIE 484
                                            V+RFKKLLQKAD +SCP+H LPS SIE
Sbjct: 422 DMPAYIKTYIHRAGRTARAGKTGCCFTFLRKHEVKRFKKLLQKADNNSCPLHCLPSESIE 481

Query: 485 LLQPTYVSALEKLKEKVESETSR-KSTIMSSSRAGKRKDMNSSK 491
            L+P Y SAL KLKE +ESE S+   TI  SSRAGK   +N+ K
Sbjct: 482 SLRPFYSSALGKLKECIESEKSKHHRTISKSSRAGKVSGVNNQK 513

The following BLAST results are available for this feature:
BLAST of Lsi01G001250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RH1_ARATH9.7e-16565.05DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3[more]
RH1_ORYSJ4.0e-14254.79DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g07... [more]
DDX51_HUMAN1.1e-6237.08ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3[more]
DDX51_DANRE1.3e-6036.38ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1[more]
DDX51_MOUSE4.6e-5835.87ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=1 SV=1[more]
BLAST of Lsi01G001250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNZ7_CUCSA3.5e-21478.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524090 PE=4 SV=1[more]
B9H0T9_POPTR2.8e-19571.01DEAD/DEAH box helicase family protein OS=Populus trichocarpa GN=POPTR_0004s16530... [more]
K4CB60_SOLLC7.0e-18668.15Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
W9R784_9ROSA1.3e-18479.71DEAD-box ATP-dependent RNA helicase 1 OS=Morus notabilis GN=L484_011439 PE=4 SV=... [more]
M1C3V3_SOLTU2.2e-18467.50Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022975 PE=4 SV=1[more]
BLAST of Lsi01G001250 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15850.15.5e-16665.05 RNA helicase 1[more]
AT5G60990.17.4e-2228.49 DEA(D/H)-box RNA helicase family protein[more]
AT4G16630.18.2e-2125.19 DEA(D/H)-box RNA helicase family protein[more]
AT5G08620.11.9e-1725.53 DEA(D/H)-box RNA helicase family protein[more]
AT2G33730.13.2e-1725.77 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
BLAST of Lsi01G001250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433605|ref|XP_004134588.1|5.1e-21478.33PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus][more]
gi|659078198|ref|XP_008439599.1|2.5e-21377.80PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo][more]
gi|743885160|ref|XP_011037480.1|2.1e-19670.58PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Populus euphratica][more]
gi|743885158|ref|XP_011037479.1|2.1e-19670.58PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Populus euphratica][more]
gi|720089313|ref|XP_010244722.1|8.1e-19670.80PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010501 RNA secondary structure unwinding
biological_process GO:0000338 protein deneddylation
biological_process GO:1902582 single-organism intracellular transport
biological_process GO:0071702 organic substance transport
biological_process GO:0033036 macromolecule localization
biological_process GO:0016482 cytosolic transport
biological_process GO:0009987 cellular process
biological_process GO:0008150 biological_process
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005730 nucleolus
molecular_function GO:0017151 DEAD/H-box RNA helicase binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004004 ATP-dependent RNA helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G001250.1Lsi01G001250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 333..424
score: 3.5
IPR001650Helicase, C-terminalPROFILEPS51194HELICASE_CTERcoord: 320..523
score: 10
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 56..296
score: 6.1
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 50..324
score: 1.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROFILEPS51192HELICASE_ATP_BIND_1coord: 66..308
score: 21
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 312..421
score: 1.6E-19coord: 38..231
score: 1.2E-48coord: 281..311
score: 1.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 359..428
score: 3.17E-23coord: 469..523
score: 3.17E-23coord: 73..129
score: 3.17E-23coord: 36..231
score: 2.19E-40coord: 281..309
score: 2.19
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 21..151
score: 7.6E-162coord: 279..496
score: 7.6E-162coord: 173..230
score: 7.6E
NoneNo IPR availablePANTHERPTHR24031:SF68ATP-DEPENDENT RNA HELICASE DDX51coord: 21..151
score: 7.6E-162coord: 173..230
score: 7.6E-162coord: 279..496
score: 7.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G001250Csa6G524090Cucumber (Chinese Long) v2culsiB434
Lsi01G001250CSPI06G36510Wild cucumber (PI 183967)cpilsiB439
Lsi01G001250Cucsa.047930Cucumber (Gy14) v1cgylsiB022
Lsi01G001250CmaCh07G000850Cucurbita maxima (Rimu)cmalsiB786
Lsi01G001250CmaCh03G014210Cucurbita maxima (Rimu)cmalsiB602
Lsi01G001250CmoCh07G000870Cucurbita moschata (Rifu)cmolsiB774
Lsi01G001250CmoCh03G014160Cucurbita moschata (Rifu)cmolsiB588
Lsi01G001250MELO3C007111Melon (DHL92) v3.5.1lsimeB149
Lsi01G001250ClCG01G024830Watermelon (Charleston Gray)lsiwcgB127
Lsi01G001250MELO3C007111.2Melon (DHL92) v3.6.1lsimedB156
Lsi01G001250Cla97C01G024800Watermelon (97103) v2lsiwmbB115
Lsi01G001250Bhi03G000101Wax gourdlsiwgoB179
Lsi01G001250Cp4.1LG19g05920Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G001250Cp4.1LG10g06240Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G001250CsGy6G035830Cucumber (Gy14) v2cgyblsiB398
Lsi01G001250Carg14991Silver-seed gourdcarlsiB669
Lsi01G001250CsaV3_6G051950Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G001250Melon (DHL92) v3.5.1lsimeB127
Lsi01G001250Watermelon (Charleston Gray)lsiwcgB133
Lsi01G001250Watermelon (97103) v1lsiwmB136
Lsi01G001250Watermelon (97103) v1lsiwmB144
Lsi01G001250Melon (DHL92) v3.6.1lsimedB138
Lsi01G001250Silver-seed gourdcarlsiB273
Lsi01G001250Silver-seed gourdcarlsiB383
Lsi01G001250Watermelon (97103) v2lsiwmbB130
Lsi01G001250Wax gourdlsiwgoB190
Lsi01G001250Bottle gourd (USVL1VR-Ls)lsilsiB066
Lsi01G001250Cucurbita maxima (Rimu)cmalsiB199
Lsi01G001250Cucurbita maxima (Rimu)cmalsiB368
Lsi01G001250Cucurbita moschata (Rifu)cmolsiB189
Lsi01G001250Cucurbita moschata (Rifu)cmolsiB354
Lsi01G001250Cucurbita pepo (Zucchini)cpelsiB021
Lsi01G001250Cucurbita pepo (Zucchini)cpelsiB416