Lsi01G001080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G001080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionF-box/LRR protein
Locationchr01 : 1130553 .. 1131654 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATGTGATTGCTGTTTACCGTAGTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGGTATCAATTCTATCTGCTCCACTACATAATTTTAACCTTTCTGTTGAACATTGAAAGAGAAGAAGTTTAAATCCCACTGATTGCCCAATTTCTTGAGAAATTACGGTTCGTTCATTTTCCTTGAGAATTATCTGACATTTCCTTACATTTCCTAACCTTGCACTAATAATTGAAGTTGAACCCTATGGAGCATATGCAATTCCATTTGATTTTCCTTTATCTTTGTCTTCTATTTCAAATAAGAGAAATTTCCACTAGCCCAAAATGGATTGCAGACCCTATGGAGCCCAAAGATTGTTTGGAACTGTTTTCTTATTGTGACAACCTTTGTTGTTTCATTGATATTGACGTTTCTAACTTCATATTCACTTGTTACAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGAATGCATTTATTTTTTGTGAAAACTTTGAAAGCTGTTGGACAGTGTTGCCGTTTTCTGAAATATCTGATACTGAACGGAAAGTTTAATCGAGGGAAAGGTTTTGACAACGAGGCCCTTGCTGTTCCTGAAAGAACGCAAGTGTTTTTTACCGTTCAAATATTGGGCAATGTCCTAACTAACACAGGCTTGCAGGGCATTCCTGATGGTTGTCCTGATTTAGGAACTCTTGATTTACGCCATTGTTTCAATTTACATTTGACGGGGCAGTTGAG

mRNA sequence

TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGAATGCATTTATTTTTTGTGAAAACTTTGAAAGCTGTTGGACAGTGTTGCCGTTTTCTGAAATATCTGATACTGAACGGAAAGTTTAATCGAGGGAAAGGTTTTGACAACGAGGCCCTTGCTGTTCCTGAAAGAACGCAAGTGTTTTTTACCGTTCAAATATTGGGCAATGTCCTAACTAACACAGGCTTGCAGGGCATTCCTGATGGTTGTCCTGATTTAGGAACTCTTGATTTACGCCATTGTTTCAATTTACATTTGACGGGGCAGTTGAG

Coding sequence (CDS)

TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGA

Protein sequence

SNHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
Homology
[Close]
BLAST of Lsi01G001080 vs. Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1 

Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 78  GHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LEI+C        G  VDI I YF T +LL YI + S  LR  R+  C  I+D+   
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 138 EAVSNLPLLEHLEI 144
           EAV  LP LE LE+
Sbjct: 135 EAVVKLP-LEELEL 147

[Close]
BLAST of Lsi01G001080 vs. Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHR 80
           N  ELP+  TS ILL+ GAIEIL +AQ VC  W ++CK+P MW  ID+ N        + 
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYD 239

Query: 81  LEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAV 140
           LE +C  +VD        I I Y+ T++L++YI + S  L+   +  C+ I+DE +++AV
Sbjct: 240 LESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAV 299

Query: 141 SNLPLLEHLEI 144
           S +PLLE+LE+
Sbjct: 300 SKVPLLEYLEV 310

[Close]
BLAST of Lsi01G001080 vs. Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-19
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 1 

Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNM 80
           N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  +
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 81  GHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 140
            + +E +C ++VD        INI+Y      L YI + S  LRR  +  C  +    + 
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 141 EAVSNLPLLEHLEI 144
           EA   LPLLE L+I
Sbjct: 140 EAAMKLPLLEELDI 153

[Close]
BLAST of Lsi01G001080 vs. Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-15
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 1 

Query: 1   SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICK 60
           S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K
Sbjct: 4   SSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSK 63

Query: 61  NPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI--------NIEY--FRTDELLLYITNS 120
           +PL+W  IDM N    + + + +E  C   VD+        NI+   F+T  LL Y+   
Sbjct: 64  DPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER 123

Query: 121 SKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           S  LRR R+     I+   + EA+  LPLLE LE+
Sbjct: 124 SSNLRRLRVKGGQ-ITSVGIFEAIVKLPLLEELEL 156

[Close]
BLAST of Lsi01G001080 vs. Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=3 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P 
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPR 121
           MW  I+     M+         H +++  G  ++INIE+F +D LL YI + S  L+   
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLG 139

Query: 122 IAHCYGISDERLSEAVSNLPLLEHLEI 144
           I+    ++++ +   +  LPLLE L I
Sbjct: 140 ISIYEPMTNKGVMNGIEKLPLLETLVI 166

[Close]
BLAST of Lsi01G001080 vs. TrEMBL
Match: A0A0A0KI84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525270 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 1 

Query: 11  MIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHN 70
           MIQ+ E  A N LELPA    +IL K GAIEIL++AQNVCS W KICK+P +W VIDMHN
Sbjct: 1   MIQKREVPARNWLELPAEVIFVILHKLGAIEILTTAQNVCSLWYKICKDPFLWRVIDMHN 60

Query: 71  SGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRI-AHCY 130
           SG  ++  H LEI+        CGQ V+INIE+F +DELLLYI NSSKQ+RR R+  +  
Sbjct: 61  SGDLNSFDH-LEIMCKHAVDRSCGQLVEINIEHFGSDELLLYIANSSKQVRRLRLMGYSL 120

Query: 131 GISDERLSEAVSNLPLLEHLEI 144
             + E L  AVS LPLLEHLEI
Sbjct: 121 YFTKEVLGVAVSELPLLEHLEI 141

[Close]
BLAST of Lsi01G001080 vs. TrEMBL
Match: A0A061DXY4_THECC (F-box/LRR-repeat protein 23, putative isoform 1 OS=Theobroma cacao GN=TCM_006073 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-31
Identity = 78/151 (51.66%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 1   SNHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNP 60
           +  N  E    +  +E +  N LELP + T+ IL + GA EIL SAQNVCS WRKICK+P
Sbjct: 308 TRENRKERKRTMTTAEGETRNWLELPLDVTASILSRLGAFEILKSAQNVCSQWRKICKDP 367

Query: 61  LMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQL 120
           LMW  IDMHN G        LE++        CG  +DINIEYF TDELLL I   S  L
Sbjct: 368 LMWRSIDMHNLGYIAAEDRVLEMMCVHAVDRSCGHLLDINIEYFGTDELLLNIAERSSHL 427

Query: 121 RRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           +R R+  CY ISDE LS+A S LP LE LEI
Sbjct: 428 KRLRLVSCYNISDEGLSKAASKLPFLEELEI 458

[Close]
BLAST of Lsi01G001080 vs. TrEMBL
Match: A0A0D2NIS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-31
Identity = 76/145 (52.41%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 7   ESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVI 66
           +S+     + A+  N LELP + T+ IL + GAIEIL+SAQNVCS WR ICK+PLMW  I
Sbjct: 10  KSSKRNMTTAAETRNWLELPLDVTASILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSI 69

Query: 67  DMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIA 126
           DMHN G   +M         H ++  CG  +DIN+EYF TD LLL+I+  S  L+R RI 
Sbjct: 70  DMHNLGDLWDMDYDLAKMCVHAVDRSCGHLLDINVEYFGTDALLLHISERSVHLKRLRIV 129

Query: 127 HCYGISDERLSEAVSNLPLLEHLEI 144
            CY ISDE LSEA   LP LE LEI
Sbjct: 130 SCYNISDEGLSEAALKLPFLEELEI 154

[Close]
BLAST of Lsi01G001080 vs. TrEMBL
Match: A0A0B0MKV5_GOSAR (F-box SKIP19-like protein OS=Gossypium arboreum GN=F383_07998 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 74/135 (54.81%), Postives = 88/135 (65.19%), Query Frame = 1 

Query: 17  AQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHN 76
           A+  N LELP + T+ IL + GAIEIL+SAQNVCS WR ICK+PLMW  IDMHN G   +
Sbjct: 5   AETRNWLELPLDVTASILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWD 64

Query: 77  MG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERL 136
           M         H ++  CG  +DIN+EYF TD LLL+I+  S  L+R RI  CY ISDE L
Sbjct: 65  MDYDLAKMCVHAVDRSCGHLLDINVEYFGTDALLLHISERSVHLKRLRIVSCYNISDEGL 124

Query: 137 SEAVSNLPLLEHLEI 144
           S A   LP LE LEI
Sbjct: 125 STAALKLPFLEELEI 139

[Close]
BLAST of Lsi01G001080 vs. TrEMBL
Match: A0A0A0KIS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525300 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 78/146 (53.42%), Postives = 94/146 (64.38%), Query Frame = 1 

Query: 6   MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCV 65
           MES       E ++ N LELP + TSMIL K G +EIL+ AQ VCSSWRKIC++PLMW V
Sbjct: 1   MESNLSPNSVEGESRNWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWRV 60

Query: 66  IDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRI 125
           IDM       +M + LE +        CGQ +  NIE+F TD+LLLYIT S  QL R R+
Sbjct: 61  IDMRYPCDWWDMDYNLEELCRQAVKRSCGQLIHFNIEHFGTDDLLLYITQSCNQLSRLRL 120

Query: 126 AHCYGISDERLSEAVSNLPLLEHLEI 144
            +C  ISDE L EAVS LPLLE LE+
Sbjct: 121 VYCNRISDEGLVEAVSKLPLLEDLEL 146

[Close]
BLAST of Lsi01G001080 vs. TAIR10
Match: AT4G05460.1 (AT4G05460.1 RNI-like superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1 

Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 78  GHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LEI+C        G  VDI I YF T +LL YI + S  LR  R+  C  I+D+   
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 138 EAVSNLPLLEHLEI 144
           EAV  LP LE LE+
Sbjct: 135 EAVVKLP-LEELEL 147

[Close]
BLAST of Lsi01G001080 vs. TAIR10
Match: AT4G05497.1 (AT4G05497.1 RNI-like superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-20
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 1 

Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNM 80
           N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  +
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 81  GHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 140
            + +E +C ++VD        INI+Y      L YI + S  LRR  +  C  +    + 
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 141 EAVSNLPLLEHLEI 144
           EA   LPLLE L+I
Sbjct: 140 EAAMKLPLLEELDI 153

[Close]
BLAST of Lsi01G001080 vs. TAIR10
Match: AT4G05490.1 (AT4G05490.1 RNI-like superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-16
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 1 

Query: 1   SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICK 60
           S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K
Sbjct: 4   SSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSK 63

Query: 61  NPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI--------NIEY--FRTDELLLYITNS 120
           +PL+W  IDM N    + + + +E  C   VD+        NI+   F+T  LL Y+   
Sbjct: 64  DPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER 123

Query: 121 SKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           S  LRR R+     I+   + EA+  LPLLE LE+
Sbjct: 124 SSNLRRLRVKGGQ-ITSVGIFEAIVKLPLLEELEL 156

[Close]
BLAST of Lsi01G001080 vs. TAIR10
Match: AT4G05475.1 (AT4G05475.1 RNI-like superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 9.3e-16
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P 
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPR 121
           MW  I+     M+         H +++  G  ++INIE+F +D LL YI + S  L+   
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLG 139

Query: 122 IAHCYGISDERLSEAVSNLPLLEHLEI 144
           I+    ++++ +   +  LPLLE L I
Sbjct: 140 ISIYEPMTNKGVMNGIEKLPLLETLVI 166

[Close]
BLAST of Lsi01G001080 vs. TAIR10
Match: AT4G05470.1 (AT4G05470.1 RNI-like superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 1 

Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST++      +  N ++LP   T+ ILL+    +IL +AQ VC  WR+ICK+P 
Sbjct: 26  NKKTTTSTTLESLLMKERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPS 85

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINI-EYFRTDELLLYITNSSKQLRRP 121
           MW  I+     M+N        H +++  G  ++IN+ E+F +D LL YIT+  + LR  
Sbjct: 86  MWRKINTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITD--RNLRSL 145

Query: 122 RIAHCY-GISDERLSEAVSNLPLLEHLEI 144
            +  C+  ++   +  A++ +PLLE LE+
Sbjct: 146 GLGMCFPRVTKLGVVNAIAKIPLLETLEV 172

[Close]
BLAST of Lsi01G001080 vs. NCBI nr
Match: gi|1009105556|ref|XP_015878944.1| (PREDICTED: F-box protein SKIP19 [Ziziphus jujuba])

HSP 1 Score: 153.3 bits (386), Expect = 3.2e-34
Identity = 82/144 (56.94%), Postives = 99/144 (68.75%), Query Frame = 1 

Query: 8   STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID 67
           S S +QQ E +  N LELP + TS IL + GAIEIL+SAQNVCSSWR ICK+PLMW  ID
Sbjct: 4   SPSGVQQEEER--NWLELPRDVTSTILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTID 63

Query: 68  MHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAH 127
           M N G ++ M         H +++ CGQ VDINIE+F TDELL Y+T+ S  +RR R+  
Sbjct: 64  MRNPGDTYGMDYDLETMCRHAIDLSCGQLVDINIEFFGTDELLKYLTDRSSMVRRLRLIC 123

Query: 128 CYGISDERLSEAVSNLPLLEHLEI 144
           CY ISD  LSEA + LPLLE LEI
Sbjct: 124 CYSISDNGLSEAAAKLPLLEDLEI 145

[Close]
BLAST of Lsi01G001080 vs. NCBI nr
Match: gi|778722594|ref|XP_011658525.1| (PREDICTED: putative F-box/LRR-repeat protein 23 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.1e-32
Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 1 

Query: 11  MIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHN 70
           MIQ+ E  A N LELPA    +IL K GAIEIL++AQNVCS W KICK+P +W VIDMHN
Sbjct: 1   MIQKREVPARNWLELPAEVIFVILHKLGAIEILTTAQNVCSLWYKICKDPFLWRVIDMHN 60

Query: 71  SGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRI-AHCY 130
           SG  ++  H LEI+        CGQ V+INIE+F +DELLLYI NSSKQ+RR R+  +  
Sbjct: 61  SGDLNSFDH-LEIMCKHAVDRSCGQLVEINIEHFGSDELLLYIANSSKQVRRLRLMGYSL 120

Query: 131 GISDERLSEAVSNLPLLEHLEI 144
             + E L  AVS LPLLEHLEI
Sbjct: 121 YFTKEVLGVAVSELPLLEHLEI 141

[Close]
BLAST of Lsi01G001080 vs. NCBI nr
Match: gi|823161570|ref|XP_012480661.1| (PREDICTED: F-box protein SKIP19-like [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 76/145 (52.41%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 7   ESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVI 66
           +S+     + A+  N LELP + T+ IL + GAIEIL+SAQNVCS WR ICK+PLMW  I
Sbjct: 10  KSSKRNMTTAAETRNWLELPLDVTASILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSI 69

Query: 67  DMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIA 126
           DMHN G   +M         H ++  CG  +DIN+EYF TD LLL+I+  S  L+R RI 
Sbjct: 70  DMHNLGDLWDMDYDLAKMCVHAVDRSCGHLLDINVEYFGTDALLLHISERSVHLKRLRIV 129

Query: 127 HCYGISDERLSEAVSNLPLLEHLEI 144
            CY ISDE LSEA   LP LE LEI
Sbjct: 130 SCYNISDEGLSEAALKLPFLEELEI 154

[Close]
BLAST of Lsi01G001080 vs. NCBI nr
Match: gi|590681553|ref|XP_007041114.1| (F-box/LRR-repeat protein 23, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 78/151 (51.66%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 1   SNHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNP 60
           +  N  E    +  +E +  N LELP + T+ IL + GA EIL SAQNVCS WRKICK+P
Sbjct: 308 TRENRKERKRTMTTAEGETRNWLELPLDVTASILSRLGAFEILKSAQNVCSQWRKICKDP 367

Query: 61  LMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQL 120
           LMW  IDMHN G        LE++        CG  +DINIEYF TDELLL I   S  L
Sbjct: 368 LMWRSIDMHNLGYIAAEDRVLEMMCVHAVDRSCGHLLDINIEYFGTDELLLNIAERSSHL 427

Query: 121 RRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           +R R+  CY ISDE LS+A S LP LE LEI
Sbjct: 428 KRLRLVSCYNISDEGLSKAASKLPFLEELEI 458

[Close]
BLAST of Lsi01G001080 vs. NCBI nr
Match: gi|728810325|gb|KHF99555.1| (F-box SKIP19 -like protein [Gossypium arboreum])

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-30
Identity = 74/135 (54.81%), Postives = 88/135 (65.19%), Query Frame = 1 

Query: 17  AQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHN 76
           A+  N LELP + T+ IL + GAIEIL+SAQNVCS WR ICK+PLMW  IDMHN G   +
Sbjct: 5   AETRNWLELPLDVTASILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWD 64

Query: 77  MG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERL 136
           M         H ++  CG  +DIN+EYF TD LLL+I+  S  L+R RI  CY ISDE L
Sbjct: 65  MDYDLAKMCVHAVDRSCGHLLDINVEYFGTDALLLHISERSVHLKRLRIVSCYNISDEGL 124

Query: 137 SEAVSNLPLLEHLEI 144
           S A   LP LE LEI
Sbjct: 125 STAALKLPFLEELEI 139

The following BLAST results are available for this feature:
BLAST of Lsi01G001080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKI19_ARATH2.1e-2548.51F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1[more]
FBL23_ARATH1.5e-2341.98Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1[more]
FBL9_ARATH2.9e-1941.04Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=3 SV=1[more]
FBL22_ARATH3.3e-1536.77Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1[more]
FB221_ARATH1.7e-1431.29Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=3 SV=2[more]
BLAST of Lsi01G001080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI84_CUCSA3.6e-3258.45Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525270 PE=4 SV=1[more]
A0A061DXY4_THECC8.8e-3151.66F-box/LRR-repeat protein 23, putative isoform 1 OS=Theobroma cacao GN=TCM_006073... [more]
A0A0D2NIS0_GOSRA8.8e-3152.41Uncharacterized protein OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1[more]
A0A0B0MKV5_GOSAR2.6e-3054.81F-box SKIP19-like protein OS=Gossypium arboreum GN=F383_07998 PE=4 SV=1[more]
A0A0A0KIS9_CUCSA2.6e-3053.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525300 PE=4 SV=1[more]
BLAST of Lsi01G001080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G05460.11.2e-2648.51 RNI-like superfamily protein[more]
AT4G05497.11.6e-2041.04 RNI-like superfamily protein[more]
AT4G05490.11.9e-1636.77 RNI-like superfamily protein[more]
AT4G05475.19.3e-1631.29 RNI-like superfamily protein[more]
AT4G05470.11.0e-1432.89 RNI-like superfamily protein[more]
BLAST of Lsi01G001080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009105556|ref|XP_015878944.1|3.2e-3456.94PREDICTED: F-box protein SKIP19 [Ziziphus jujuba][more]
gi|778722594|ref|XP_011658525.1|5.1e-3258.45PREDICTED: putative F-box/LRR-repeat protein 23 [Cucumis sativus][more]
gi|823161570|ref|XP_012480661.1|1.3e-3052.41PREDICTED: F-box protein SKIP19-like [Gossypium raimondii][more]
gi|590681553|ref|XP_007041114.1|1.3e-3051.66F-box/LRR-repeat protein 23, putative isoform 1 [Theobroma cacao][more]
gi|728810325|gb|KHF99555.1|3.7e-3054.81F-box SKIP19 -like protein [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G001080.1Lsi01G001080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainunknownSSF81383F-box domaincoord: 43..107
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G001080Carg19301Silver-seed gourdcarlsiB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G001080Wax gourdlsiwgoB179
Lsi01G001080Cucumber (Gy14) v1cgylsiB022
Lsi01G001080Cucurbita maxima (Rimu)cmalsiB602
Lsi01G001080Cucurbita maxima (Rimu)cmalsiB786
Lsi01G001080Cucurbita moschata (Rifu)cmolsiB588
Lsi01G001080Cucurbita moschata (Rifu)cmolsiB774
Lsi01G001080Cucurbita pepo (Zucchini)cpelsiB049
Lsi01G001080Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G001080Wild cucumber (PI 183967)cpilsiB439
Lsi01G001080Cucumber (Chinese Long) v2culsiB434
Lsi01G001080Melon (DHL92) v3.5.1lsimeB149
Lsi01G001080Watermelon (Charleston Gray)lsiwcgB127
Lsi01G001080Watermelon (97103) v1lsiwmB144
Lsi01G001080Cucumber (Gy14) v2cgyblsiB398
Lsi01G001080Melon (DHL92) v3.6.1lsimedB156
Lsi01G001080Silver-seed gourdcarlsiB669
Lsi01G001080Cucumber (Chinese Long) v3cuclsiB462
Lsi01G001080Watermelon (97103) v2lsiwmbB115