Carg19301 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19301
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein
Location	Cucurbita_argyrosperma_scaffold_137 : 262601 .. 264085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCAGCCCCAGCTCGGAAGAGGTAGCGAGGAACTGGCTTGAGTCGCCTGCAGACATCATGCCCATGATTCTGCTAAAGCTAGGTGCCATTGATATCCTTTGCAACGTGCTAAACGTCTGTTCTTCGTGGCGTAAGATCTGCAAGGACGATTTGGAGATCATATGCATAGACGCTGTTGACGTCAATTTGTTGATATCAATATTGAGTTCTTCGACTCCGATGACTTTCTCCTCCATATCTCTCGGAGGTATTTTCTTGTTCCCCTCGCACCTTTTCTTATTTGCTTAATGGATTTTCGCAATTTTGTCTTATCGGCCGGTAAGTTCTCAGTAGTAATATGATTTCGTTTCCCCCCTATACACACTCAATATACGATTACTTCGTACAATCATCTATTCGCTAGTTCCATATTGTTGAAGGTGCCTTTGTTCTAACTATAGAGAAACGTCATCCTGAAACCTTGTGTAGATGCTGCGATCGTTTAAATAAATTTCTACCGTATGTAATATCGTGCCTATTGCATCTTGTACTGCCATTTAAATTTTATTTTGCAAATCGACCGTTCTTATTTTGTTCTTGCATGAAAATCTATTTCATTGATGTATTGTTTCTGTAATGCATGTAATTTAAATCGCATAGGCTCACTTCCATACTTTATTTCAGATCAAGTACATGTGATTTGATGTTAGTCTATGGGATGGCATGGCACTCAAGATTTATGTTGAATGAAATCTTGATTCTTAGCTTCAACTGGAACCTGGACTAGTAATTGTGAAAGTTTTGGACCAAAATTGAATTTGAACCACCATTCATAATGCAGCATAGATGATAGATTACAATTTTTATGGATATAATCTTTACCTTGCTTTAACTTATAGCAGTAGATGAAATCACGACCGGTGTCTTGTATTCGTACGAATAGGATAAAACGGAAGTCATGAGGATACTTTCTATTTTTGGTGTCGTTTGCCAAAACCCTAGCAATTATGAAACAGAGATATTTGTAAGAGCATCTTTTATACTGGATGCAAATATGTGTCAAGCTTGATATGAAGCTTAGAATCAGTTTACTCGAATATGGGAAGGCACCCTAAATGGTGCCCGTCATTGCTGCGATTTCTTGTAAAAACACTATTTCGTTCTGTTTGCGTCAGAATTGTCAAATATTTTGTTAGAATACTTCTACCCTTAGCACTGATATTTGATGTTCAACCCAGTGTAGCATATGAAATTGGATGTTTTCTCTGATGGTTTGTGTAATCCACATGCCTTGCATGTAAATTTAATTTTCCCTCCACATGTTTTATCTTCTATGAATTCATATATATTTACTTTGTTGCAGCTCAGATCAACTTAGAAAACTCCCTGTTTTGCGTTCCTTTAACATCTCAGGTGAGGGAATCAGTTGCCATTCTCCCCATTTTCTGTGAAAACTTCGGAAACTGTTGGATGGTGTTGCCCTTTCCTGAAATCTCTTGA

mRNA sequence

ATGGAGTCCAGCCCCAGCTCGGAAGAGGTAGCGAGGAACTGGCTTGAGTCGCCTGCAGACATCATGCCCATGATTCTGCTAAAGCTAGGTGCCATTGATATCCTTTGCAACGTGCTAAACGTCTGTTCTTCGTGGCGTAAGATCTGCAAGGACGATTTGGAGATCATATGCATAGACGCTGTTGACGTCAATTTGTTGATATCAATATTGAGTTCTTCGACTCCGATGACTTTCTCCTCCATATCTCTCGGAGCTCAGATCAACTTAGAAAACTCCCTGTTTTGCGTTCCTTTAACATCTCAGGTGAGGGAATCAGTTGCCATTCTCCCCATTTTCTGTGAAAACTTCGGAAACTGTTGGATGGTGTTGCCCTTTCCTGAAATCTCTTGA

Coding sequence (CDS)

ATGGAGTCCAGCCCCAGCTCGGAAGAGGTAGCGAGGAACTGGCTTGAGTCGCCTGCAGACATCATGCCCATGATTCTGCTAAAGCTAGGTGCCATTGATATCCTTTGCAACGTGCTAAACGTCTGTTCTTCGTGGCGTAAGATCTGCAAGGACGATTTGGAGATCATATGCATAGACGCTGTTGACGTCAATTTGTTGATATCAATATTGAGTTCTTCGACTCCGATGACTTTCTCCTCCATATCTCTCGGAGCTCAGATCAACTTAGAAAACTCCCTGTTTTGCGTTCCTTTAACATCTCAGGTGAGGGAATCAGTTGCCATTCTCCCCATTTTCTGTGAAAACTTCGGAAACTGTTGGATGGTGTTGCCCTTTCCTGAAATCTCTTGA

Protein sequence

MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDAVDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCENFGNCWMVLPFPEIS

Homology

[Close]

BLAST of Carg19301 vs. NCBI nr
Match: XP_022926026.1 (uncharacterized protein LOC111433264 [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDA 60
           M+S+PSSEEVARNWLESPADIMPMILLKLGAIDIL NVLNVCSSWRKICKDDLEIICIDA
Sbjct: 1   MDSNPSSEEVARNWLESPADIMPMILLKLGAIDILSNVLNVCSSWRKICKDDLEIICIDA 60

Query: 61  VDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCENFGNCW 120
           VDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCENFGNCW
Sbjct: 61  VDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCENFGNCW 120

Query: 121 MVLPFPEIS 130
           MVLPFPEIS
Sbjct: 121 MVLPFPEIS 129

[Close]

BLAST of Carg19301 vs. NCBI nr
Match: XP_023543620.1 (putative F-box/LRR-repeat protein 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 7.3e-50
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICIDA 60
           M+S+PSSEEVARNWLESPADIM MILLKLGAIDIL N+LNVCSSWRKI KDDLEIICIDA
Sbjct: 1   MDSNPSSEEVARNWLESPADIMSMILLKLGAIDILSNLLNVCSSWRKIRKDDLEIICIDA 60

Query: 61  VDVNLLISILSSSTPMTFSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCEN 116
           VDVNLLISILSSSTPMT SSISLGAQINLENSLFCVPLTSQVRESVAILPIFCEN
Sbjct: 61  VDVNLLISILSSSTPMTCSSISLGAQINLENSLFCVPLTSQVRESVAILPIFCEN 115

[Close]

BLAST of Carg19301 vs. NCBI nr
Match: XP_022146630.1 (F-box protein SKIP19-like [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 44/81 (54.32%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------- 60
          MES+P S + ARNWLE PADI  MILLKLGAI+IL +  +VCS WRKICKD         
Sbjct: 1  MESNPISGDEARNWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDM 60

Query: 61 ----------DLEIICIDAVD 63
                    DLE +CI AVD
Sbjct: 61 HNMGEWDMDYDLEQMCIQAVD 81

[Close]

BLAST of Carg19301 vs. NCBI nr
Match: XP_022146724.1 (putative F-box/LRR-repeat protein 23 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 41/80 (51.25%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 3  SSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD----------- 62
          S+P+SEE ARNWLE PAD   MIL+KLGA+DIL N   VCS WRKIC D           
Sbjct: 5  SNPNSEEPARNWLELPADTTSMILMKLGAVDILSNAQIVCSLWRKICYDPLMWRVVDMRN 64

[Close]

BLAST of Carg19301 vs. NCBI nr
Match: XP_023003415.1 (F-box protein SKIP19-like [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          MES P SE+ A NWL+ P D+M  ILLKL A DIL NV NVCSSWR+ICKD
Sbjct: 1  MESCPISEQPATNWLDLPDDLMTTILLKLCAFDILVNVQNVCSSWRRICKD 51

[Close]

BLAST of Carg19301 vs. TAIR10
Match: AT4G05497.1 (RNI-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 12 RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          RNW E P ++   ILL+LGAI+IL N   VC SWR++C+D
Sbjct: 19 RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQD 58

[Close]

BLAST of Carg19301 vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-07
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 3  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------- 62
          S P++ EV  + NW E P ++   IL +LGAI+IL N   VC SWR++CKD         
Sbjct: 6  SPPAAMEVGESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDM 65

[Close]

BLAST of Carg19301 vs. TAIR10
Match: AT4G05490.1 (RNI-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 8  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL 54
          EE   NW E P D++  ILL+L  ++IL N   VC SWR++ KD L
Sbjct: 21 EEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPL 66

[Close]

BLAST of Carg19301 vs. TAIR10
Match: AT4G05470.1 (RNI-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 13 NWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          NW++ P ++   ILL+L   DIL N   VC  WR+ICKD
Sbjct: 45 NWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKD 83

[Close]

BLAST of Carg19301 vs. TAIR10
Match: AT4G05475.1 (RNI-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 13 NWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          NW++ P ++   ILL+L   DIL N   +C +WR+ICKD
Sbjct: 39 NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKD 77

[Close]

BLAST of Carg19301 vs. Swiss-Prot
Match: sp|Q9S9V8|FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 12 RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          RNW E P ++   ILL+LGAI+IL N   VC SWR++C+D
Sbjct: 19 RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQD 58

[Close]

BLAST of Carg19301 vs. Swiss-Prot
Match: sp|Q9M0U9|SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.6e-06
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 3  SSPSSEEV--ARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD--------- 62
          S P++ EV  + NW E P ++   IL +LGAI+IL N   VC SWR++CKD         
Sbjct: 6  SPPAAMEVGESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDM 65

[Close]

BLAST of Carg19301 vs. Swiss-Prot
Match: sp|Q9S9V9|FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 28/71 (39.44%), Postives = 35/71 (49.30%), Query Frame = 0


Query: 12  RNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD-------------------- 63
           RNW E P+ +   ILL+LGAI+IL N   VC  W ++CKD                    
Sbjct: 179 RNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKY 238

[Close]

BLAST of Carg19301 vs. Swiss-Prot
Match: sp|Q9M0U6|FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 8  EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDL 54
          EE   NW E P D++  ILL+L  ++IL N   VC SWR++ KD L
Sbjct: 21 EEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPL 66

[Close]

BLAST of Carg19301 vs. Swiss-Prot
Match: sp|Q9M0U8|FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 13 NWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          NW++ P ++   ILL+L   DIL N   VC  WR+ICKD
Sbjct: 45 NWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKD 83

[Close]

BLAST of Carg19301 vs. TrEMBL
Match: tr|A0A1U7Z1P1|A0A1U7Z1P1_NELNU (F-box protein SKIP19 OS=Nelumbo nucifera OX=4432 GN=LOC104588348 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-08
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 6  SSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICID 60
          SSEEV RNWL+ P D++ ++  KLG  D+L NV NVCSSWRK CK+ L  + ID
Sbjct: 3  SSEEV-RNWLDLPGDVLSLVFSKLGVFDVLFNVQNVCSSWRKFCKEPLVWLAID 55

[Close]

BLAST of Carg19301 vs. TrEMBL
Match: tr|A0A200PPN6|A0A200PPN6_9MAGN (F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_1673g13 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 2  ESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          ++  SSEEV RNWLE P D+M +I LKLGAIDIL    +VCS+WRK+ K+
Sbjct: 4  QTPDSSEEVRRNWLELPPDVMSLIFLKLGAIDILYRAQSVCSAWRKLSKE 53

[Close]

BLAST of Carg19301 vs. TrEMBL
Match: tr|A0A200PMG1|A0A200PMG1_9MAGN (F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_8053g3 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MESSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKD 52
          +E + SSEEV RNWLE P D+M +I LKLGAIDIL    +VCS+WRK+ K+
Sbjct: 9  LEEADSSEEV-RNWLELPPDVMSLIFLKLGAIDILFRAQSVCSAWRKLSKE 58

[Close]

BLAST of Carg19301 vs. TrEMBL
Match: tr|A0A1U8ATB4|A0A1U8ATB4_NELNU (putative F-box/LRR-repeat protein 23 OS=Nelumbo nucifera OX=4432 GN=LOC104603872 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 3  SSPSSEEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICK 51
          ++P S E  RNWLE PAD++ +I +KLGAI++L     VCSSWRK  K
Sbjct: 4  ANPDSPEEVRNWLELPADVLSLIFMKLGAIEVLARAQAVCSSWRKFSK 51

[Close]

BLAST of Carg19301 vs. TrEMBL
Match: tr|A0A1S3AZQ4|A0A1S3AZQ4_CUCME (F-box protein SKIP19-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484331 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.3e-06
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 3  SSPSS-EEVARNWLESPADIMPMILLKLGAIDILCNVLNVCSSWRKICKDDLEIICID 60
          S+P+S E  +RNWLE P D+  MIL KLG ++IL     VCSSWRKIC+D L    ID
Sbjct: 5  SNPNSVEGESRNWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWRVID 62

The following BLAST results are available for this feature:

BLAST of Carg19301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926026.1	2.0e-63	97.67	uncharacterized protein LOC111433264 [Cucurbita moschata]	[more]
XP_023543620.1	7.3e-50	93.91	putative F-box/LRR-repeat protein 9 [Cucurbita pepo subsp. pepo]	[more]
XP_022146630.1	5.1e-11	54.32	F-box protein SKIP19-like [Momordica charantia]	[more]
XP_022146724.1	9.7e-10	51.25	putative F-box/LRR-repeat protein 23 [Momordica charantia]	[more]
XP_023003415.1	9.7e-10	68.63	F-box protein SKIP19-like [Cucurbita maxima]	[more]

BLAST of Carg19301 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05497.1	8.4e-08	55.00	RNI-like superfamily protein	[more]
AT4G05460.1	4.2e-07	39.02	RNI-like superfamily protein	[more]
AT4G05490.1	1.6e-06	47.83	RNI-like superfamily protein	[more]
AT4G05470.1	1.0e-05	48.72	RNI-like superfamily protein	[more]
AT4G05475.1	1.8e-05	46.15	RNI-like superfamily protein	[more]

BLAST of Carg19301 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9V8\|FBL9_ARATH	1.5e-06	55.00	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
sp\|Q9M0U9\|SKI19_ARATH	7.6e-06	39.02	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
sp\|Q9S9V9\|FBL23_ARATH	1.3e-05	39.44	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
sp\|Q9M0U6\|FBL22_ARATH	2.9e-05	47.83	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]
sp\|Q9M0U8\|FBL21_ARATH	1.9e-04	48.72	Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE...	[more]

BLAST of Carg19301 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U7Z1P1\|A0A1U7Z1P1_NELNU	6.0e-08	57.41	F-box protein SKIP19 OS=Nelumbo nucifera OX=4432 GN=LOC104588348 PE=4 SV=1	[more]
tr\|A0A200PPN6\|A0A200PPN6_9MAGN	1.0e-07	60.00	F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_1673g13 PE=4 SV=1	[more]
tr\|A0A200PMG1\|A0A200PMG1_9MAGN	3.0e-07	60.78	F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_8053g3 PE=4 SV=1	[more]
tr\|A0A1U8ATB4\|A0A1U8ATB4_NELNU	3.3e-06	54.17	putative F-box/LRR-repeat protein 23 OS=Nelumbo nucifera OX=4432 GN=LOC104603872...	[more]
tr\|A0A1S3AZQ4\|A0A1S3AZQ4_CUCME	7.3e-06	55.17	F-box protein SKIP19-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484331 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19301-RA	Carg19301-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 129..129
None	No IPR available	PANTHER	PTHR44078	FAMILY NOT NAMED	coord: 5..63
None	No IPR available	PANTHER	PTHR44078:SF5	F-BOX PROTEIN SKIP19-RELATED	coord: 5..63
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 18..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19301	Cla009813	Watermelon (97103) v1	carwmB0292
Carg19301	MELO3C007097	Melon (DHL92) v3.5.1	carmeB0301
Carg19301	ClCG01G025020	Watermelon (Charleston Gray)	carwcgB0292
Carg19301	Lsi01G001080	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19301	MELO3C007097.2	Melon (DHL92) v3.6.1	carmedB0312
Carg19301	Bhi03G000122	Wax gourd	carwgoB0385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19301	Silver-seed gourd	carcarB327
Carg19301	Silver-seed gourd	carcarB328
Carg19301	Cucumber (Gy14) v2	carcgybB0312
Carg19301	Cucumber (Gy14) v1	carcgyB0350
Carg19301	Cucurbita maxima (Rimu)	carcmaB0415
Carg19301	Cucurbita maxima (Rimu)	carcmaB0411
Carg19301	Cucurbita maxima (Rimu)	carcmaB0412
Carg19301	Cucurbita maxima (Rimu)	carcmaB0413
Carg19301	Cucurbita moschata (Rifu)	carcmoB0406
Carg19301	Cucurbita moschata (Rifu)	carcmoB0407
Carg19301	Cucurbita moschata (Rifu)	carcmoB0408
Carg19301	Cucurbita moschata (Rifu)	carcmoB0410
Carg19301	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19301	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19301	Cucurbita pepo (Zucchini)	carcpeB0415
Carg19301	Cucurbita pepo (Zucchini)	carcpeB0416
Carg19301	Wild cucumber (PI 183967)	carcpiB0332
Carg19301	Cucumber (Chinese Long) v2	carcuB0326
Carg19301	Cucumber (Chinese Long) v3	carcucB0332
Carg19301	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19301	Watermelon (Charleston Gray)	carwcgB0293
Carg19301	Watermelon (97103) v1	carwmB0291
Carg19301	Watermelon (97103) v2	carwmbB0307
Carg19301	Watermelon (97103) v2	carwmbB0309