Lsi01G000080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G000080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Excitatory amino acid transporter 1
Location	chr01 : 127854 .. 128981 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAATTAACACTCACTTCAAGTGGGCCAAAAGGAAAATAATAATAATAATAATTCTTGAGCTGATAAATTGATAACTTGGCCGTAGAAAAATAGTGGAGGGTTGAAGGTGTCACCAAATTACGAAGCAGTGCACTAACAGTGGAAAGAGGGAGATCGCTCTTCCGGCTGAACACCAAATTATCGATTCGCTGACATTAGAACATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCGTACGTTCCTCTCTTACAATGAAACCCTAATCTTTTCCTTTCCCGATCAGACTTTTCATAACCCTTCCCTTGTTTTCGATTTCTATAATCGATTCCATCTCCTAATTTTGCAGATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAGGTATTTATACCTAACGAATGTCGTCTCCTTTTTTTTTTGTGCGACTTCCCGCCTTATATCGTGTGAGGTCGTACAGTTTGACCAATGTTCTATAACTTTCGAAGGATCAGAAGAAGATAATCGTCTGCACTTGGATTGGAATATGCTAGACCAATGTCTCGTTAATTCCGCGTTAGACCACAATTACATAGAAAATATTAAGTTATTAGGTTATTGTAATTTTAAGAGAGGAAAAAGTGGCATTTTTAAATGAACAAGAAATTACAAGAAGTGAGATCAGAAAAGAAGAGATTAGGGAGATCAGATATTTCCCCAGTCAAGGTGCATGTAGGAAACACCCCCCATTGCAATTAATGAGATGGAGTGATTAGTTTAGGTACGCAAATCCCCATTTCAAGTAGAGATCATATTAAGTTATAACGTTGTGTTGTTCCTTTCTATCAAAGAGACCGCGGGG

mRNA sequence

GCAGAATTAACACTCACTTCAAGTGGGCCAAAAGGAAAATAATAATAATAATAATTCTTGAGCTGATAAATTGATAACTTGGCCGTAGAAAAATAGTGGAGGGTTGAAGGTGTCACCAAATTACGAAGCAGTGCACTAACAGTGGAAAGAGGGAGATCGCTCTTCCGGCTGAACACCAAATTATCGATTCGCTGACATTAGAACATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAGGTATTTATACCTAACGAATGTCGTCTCCTTTTTTTTTTGTGCGACTTCCCGCCTTATATCGTGTGAGGTCGTACAGTTTGACCAATGTTCTATAACTTTCGAAGGATCAGAAGAAGATAATCGTCTGCACTTGGATTGGAATATGCTAGACCAATGTCTCGTTAATTCCGCGTTAGACCACAATTACATAGAAAATATTAAGTTATTAGGTTATTGTAATTTTAAGAGAGGAAAAAGTGGCATTTTTAAATGAACAAGAAATTACAAGAAGTGAGATCAGAAAAGAAGAGATTAGGGAGATCAGATATTTCCCCAGTCAAGGTGCATGTAGGAAACACCCCCCATTGCAATTAATGAGATGGAGTGATTAGTTTAGGTACGCAAATCCCCATTTCAAGTAGAGATCATATTAAGTTATAACGTTGTGTTGTTCCTTTCTATCAAAGAGACCGCGGGG

Coding sequence (CDS)

ATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAG

Protein sequence

MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDLDKMLEKAKAANERRYFGIVLFLLSYFLYVPLISYFCFCTIANFDCRTYSYIKSIDSR

Homology

[Close]

BLAST of Lsi01G000080 vs. TrEMBL
Match: A0A067GPI2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034827mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-35
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKMLEKAKAANERRYFG
Sbjct: 61 DKMLEKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. TrEMBL
Match: A0A0A0KJ47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538720 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. TrEMBL
Match: W9RNQ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011534 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-35
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          M  S+TMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQ+VKWDA+LQEDL
Sbjct: 1  MPLSSTMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLEKAKAANERRYFGIVLFLLSY 86
          DKMLEKAKAANERRYFG VL L S+
Sbjct: 61 DKMLEKAKAANERRYFGCVLLLRSH 85

[Close]

BLAST of Lsi01G000080 vs. TrEMBL
Match: V4TMV6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017510mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-35
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. TrEMBL
Match: A0A059CCB8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04324 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATM+GALLGLGTQMYSNALRKLPYMRHPWEH VGMGLG VFVNQ+VKWDA+LQEDL
Sbjct: 1  MAWSATMVGALLGLGTQMYSNALRKLPYMRHPWEHAVGMGLGVVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. TAIR10
Match: AT4G20150.1 (AT4G20150.1 unknown protein)

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-33
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVF NQ+VKWD KL+EDL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: gi|641858464|gb|KDO77186.1| (hypothetical protein CISIN_1g034827mg [Citrus sinensis])

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKMLEKAKAANERRYFG
Sbjct: 61 DKMLEKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: gi|449433457|ref|XP_004134514.1| (PREDICTED: uncharacterized protein LOC101220487 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: gi|659077851|ref|XP_008439421.1| (PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: gi|703114289|ref|XP_010100603.1| (hypothetical protein L484_011534 [Morus notabilis])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          M  S+TMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQ+VKWDA+LQEDL
Sbjct: 1  MPLSSTMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLEKAKAANERRYFGIVLFLLSY 86
          DKMLEKAKAANERRYFG VL L S+
Sbjct: 61 DKMLEKAKAANERRYFGCVLLLRSH 85

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: gi|567912529|ref|XP_006448578.1| (hypothetical protein CICLE_v10017510mg [Citrus clementina])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

The following BLAST results are available for this feature:

BLAST of Lsi01G000080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G000080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067GPI2_CITSI	1.3e-35	94.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034827mg PE=4 SV=1	[more]
A0A0A0KJ47_CUCSA	1.3e-35	97.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538720 PE=4 SV=1	[more]
W9RNQ1_9ROSA	8.2e-35	88.24	Uncharacterized protein OS=Morus notabilis GN=L484_011534 PE=4 SV=1	[more]
V4TMV6_9ROSI	8.2e-35	94.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017510mg PE=4 SV=1	[more]
A0A059CCB8_EUCGR	2.4e-34	93.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04324 PE=4 SV=1	[more]

BLAST of Lsi01G000080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20150.1	2.4e-33	85.53	unknown protein	[more]

BLAST of Lsi01G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641858464\|gb\|KDO77186.1\|	1.8e-35	94.81	hypothetical protein CISIN_1g034827mg [Citrus sinensis]	[more]
gi\|449433457\|ref\|XP_004134514.1\|	1.8e-35	97.37	PREDICTED: uncharacterized protein LOC101220487 [Cucumis sativus]	[more]
gi\|659077851\|ref\|XP_008439421.1\|	1.8e-35	97.37	PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo]	[more]
gi\|703114289\|ref\|XP_010100603.1\|	1.2e-34	88.24	hypothetical protein L484_011534 [Morus notabilis]	[more]
gi\|567912529\|ref\|XP_006448578.1\|	1.2e-34	94.74	hypothetical protein CICLE_v10017510mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G000080.1	Lsi01G000080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 53..73 scor
None	No IPR available	PANTHER	PTHR36052	FAMILY NOT NAMED	coord: 2..81 score: 1.6
None	No IPR available	PANTHER	PTHR36052:SF1	SUBFAMILY NOT NAMED	coord: 2..81 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G000080	Csa6G538720	Cucumber (Chinese Long) v2	culsiB434
Lsi01G000080	CSPI06G37650	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G000080	Cucsa.049000	Cucumber (Gy14) v1	cgylsiB022
Lsi01G000080	CmaCh07G000060	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G000080	CmoCh07G000080	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G000080	Cla009906	Watermelon (97103) v1	lsiwmB144
Lsi01G000080	MELO3C006999	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G000080	ClCG01G025920	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G000080	MELO3C006999.2	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G000080	Cla97C01G026070	Watermelon (97103) v2	lsiwmbB115
Lsi01G000080	Cp4.1LG19g05260	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G000080	CsGy6G037030	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G000080	Carg14920	Silver-seed gourd	carlsiB669
Lsi01G000080	CsaV3_6G053130	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G000080	Wax gourd	lsiwgoB153
Lsi01G000080	Cucurbita maxima (Rimu)	cmalsiB602
Lsi01G000080	Cucurbita moschata (Rifu)	cmolsiB588
Lsi01G000080	Cucurbita pepo (Zucchini)	cpelsiB049
Lsi01G000080	Silver-seed gourd	carlsiB977