Carg14920 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14920
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Excitatory amino acid transporter
Location	Cucurbita_argyrosperma_scaffold_071 : 62220 .. 64304 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGGCTTGGCACTCAGATGTATTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCGTACGTCCATCTCTTAATGCAAAAACAAAAACCCTAACCTTCTCCTTTCCCTATCAGATTCTTCACATTTCTTCCACTGTTTTCGATTTCTAACATTGACTCCATCTTCTTATTTTGCAGATCCCTGGGAGCACGTGGTTGGAATGGGATTGGGAGCCGTCTTCGTCGATCAGCTCGTCAAATGGGACGCCAAGCTCCAGGAGGACCTTGACAAGATGCTCGAGAAGGCCAAAGCTGCCAACGAGCGCCGTTACTTTGGTCTTTTTCTTCTCCTATCATCTAATTTTGTTACCGTTCCTCTTAAATTTCCTCTGCTCCCCTACCATTGCCATTGCTTTTATACGATTGCAAATTTCGATTGCCGCTCTTATTCATTTATCTAGTCCGCCGATTGGCGCTAGGTTTTCATGCCTAACAAATATCGTCTCATTTTTTTCCGCCACCAAGATATAAACTTATTGTGCCACTTCCTGCGTTATGTTTTGTGTGGTTTTACGGTTTGGTCGATGTTTTATGATTTTTTTATAGAAACAATTCCATTCCATTGATTGAAACTTACAAAAGGATGTAGTATCCATGATTTTTTTGAAAGGCCTCCCCAATTTACAATTTGGGAGGTATAACTGAAGTAAAAATATTAGACAATTTCTAAATCTCTGGTCTTTTTTTGCGATTGTTCTTTGATCTCCTTCTTTTCACAAATTCCAAAAAAAAAGTCAGTGATGAGGTTTTTCCATAGTAGGGTTTTTGCATTCTTTTAGAGATGATATGTTAAAGTTGTGTCCAATAGATCCTATATCTCCTTCGAAAATGTGAGATGTCATCCAAAGATATTGAGAATCGTCATCTAGAAATTTTGAGCACATGTGCATGACATAAATAAGTGGATTTGTGATTCGTTTTTTTTTTCTTGCATAATAAACACCAATTTGGAAATAGAGTCATGTAAGACATTCTTTTTTGAAGATTTTCATTCGTGCTTATGACTTTATGCGCTATTTCTCAAAAGAAGTACTTCACTTTTTTAGGGTGATCTCCTTTCCATATTGTCTTTGCTAGCGTGGAATTTATTGGTTCTTCTTTTTCCCTTATGTCCATCATCAAAGATTTTGAAGAGAAGCTTCCGTCAACACTGGAAAGCCAAGTCAATGAGTCTACTTCATTTGACAATACAACTGGGGAAAGGTTGAGACTTAATTCGGCCAATTCCGTTGCTTTGTCATCCTTTAGGTTCATACCAAGCTTTAGGTCCCAAAATTTCTTGAGAACATTCCATATTTCTTTGGTCGTGGTTCTTTTACTGTGAGAAAGTCTGTACAAAAGTGTATACTGCAAGGCTAGCACGGTGTTTTCAATATATGGGTCGGTCTATAATAATGTGCTTCTTCCATCACACGCCCTATGGCGAATTCGATTGGTGATGAGGTTTTGATGTTTCTTTATATACTTTCAGGCCCTATGTAGGAATATATTTAGCCTTTATAAGTTTTCTCCGCAGGACATTTTCAATGTTTATAACTTTTGAAGGATCAGAAGAGGATAATCATCTGTTCTTGGATTGGAATATTTTGGGGCCAATGGTTCGTTAATTCTGTGTTAGATCACAATTACATAGAAACTCCCCATTGCAATTAATAAGATAGATTGACTAGTTTAGATACACAAATCCTTATGTAGAGATTTCCGACTAGAGATCATGTGCAGTACAATTTCTAGAACCATACATTACAAGGGTTCTGTTGTTTCTTTCTATCCGAATAGATCACGAGGGAATTTGATGCCTTATCCAAAGCTTGTTTTTCCTCTAAACCATTCACCCGGAGTAAGGCAGTAGTTTCTTGATATATTTGATTAATTGCATAGATTAATCTTGATTAGTCAAGGCAGTTTTGTTTTACTGTTGTCGATTTTTAAGTTGGTTTTTTTAGGCTTCAGTTGTTGGCCACGGTATAAATGCAGTCCTCATGAAGGTCCGCCAGAATTCAGTGGCCTAA

mRNA sequence

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGGCTTGGCACTCAGATGTATTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCCTGGGAGCACGTGGTTGGAATGGGATTGGGAGCCGTCTTCGTCGATCAGCTCGTCAAATGGGACGCCAAGCTCCAGGAGGACCTTGACAAGATGCTCGAGAAGGCCAAAGCTGCCAACGAGCGCCGTTACTTTGTTGTTGGCCACGGTATAAATGCAGTCCTCATGAAGGTCCGCCAGAATTCAGTGGCCTAA

Coding sequence (CDS)

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGGCTTGGCACTCAGATGTATTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCCTGGGAGCACGTGGTTGGAATGGGATTGGGAGCCGTCTTCGTCGATCAGCTCGTCAAATGGGACGCCAAGCTCCAGGAGGACCTTGACAAGATGCTCGAGAAGGCCAAAGCTGCCAACGAGCGCCGTTACTTTGTTGTTGGCCACGGTATAAATGCAGTCCTCATGAAGGTCCGCCAGAATTCAGTGGCCTAA

Protein sequence

MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDLDKMLEKAKAANERRYFVVGHGINAVLMKVRQNSVA

Homology

[Close]

BLAST of Carg14920 vs. NCBI nr
Match: XP_022926916.1 (uncharacterized protein LOC111433888 [Cucurbita moschata] >XP_023517952.1 uncharacterized protein LOC111781532 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 7.6e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Carg14920 vs. NCBI nr
Match: OWM75155.1 (hypothetical protein CDL15_Pgr012641 [Punica granatum])

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHV+GMGLGAVFV+QLVKWDA+L+EDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAQLKEDL 60

Query: 61 DKMLEKAKAANERRYFVVGHGINAVLMKVRQNS 94
          DKMLEKAKAANERRYF   H +  VL + + +S
Sbjct: 61 DKMLEKAKAANERRYFGTFHPLLPVLFRYQIDS 93

[Close]

BLAST of Carg14920 vs. NCBI nr
Match: XP_023003551.1 (uncharacterized protein LOC111497120 [Cucurbita maxima])

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFV+QLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Carg14920 vs. NCBI nr
Match: XP_022158610.1 (uncharacterized protein LOC111025064 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 8.4e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHV+GMGLGAVFV+QLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Carg14920 vs. NCBI nr
Match: PKI58364.1 (hypothetical protein CRG98_021239 [Punica granatum])

HSP 1 Score: 155.6 bits (392), Expect = 8.4e-35
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHV+GMGLGAVFV+QLVKWDA+L+EDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAQLKEDL 60

Query: 61 DKMLEKAKAANERRYFVV 79
          DKMLEKAKAANERRYFV+
Sbjct: 61 DKMLEKAKAANERRYFVL 78

[Close]

BLAST of Carg14920 vs. TAIR10
Match: AT4G20150.1 (unknown protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-33
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVF +QLVKWD KL+EDL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

[Close]

BLAST of Carg14920 vs. TrEMBL
Match: tr|A0A218WQS1|A0A218WQS1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012641 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHV+GMGLGAVFV+QLVKWDA+L+EDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAQLKEDL 60

Query: 61 DKMLEKAKAANERRYFVVGHGINAVLMKVRQNS 94
          DKMLEKAKAANERRYF   H +  VL + + +S
Sbjct: 61 DKMLEKAKAANERRYFGTFHPLLPVLFRYQIDS 93

[Close]

BLAST of Carg14920 vs. TrEMBL
Match: tr|A0A2I0JPZ2|A0A2I0JPZ2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021239 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-35
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHV+GMGLGAVFV+QLVKWDA+L+EDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAQLKEDL 60

Query: 61 DKMLEKAKAANERRYFVV 79
          DKMLEKAKAANERRYFV+
Sbjct: 61 DKMLEKAKAANERRYFVL 78

[Close]

BLAST of Carg14920 vs. TrEMBL
Match: tr|A0A1S3AYR6|A0A1S3AYR6_CUCME (uncharacterized protein LOC103484235 OS=Cucumis melo OX=3656 GN=LOC103484235 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.4e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFV+QLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Carg14920 vs. TrEMBL
Match: tr|A0A0A0KJ47|A0A0A0KJ47_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.4e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFV+QLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Carg14920 vs. TrEMBL
Match: tr|A0A2I4HPW2|A0A2I4HPW2_9ROSI (uncharacterized protein LOC109020204 OS=Juglans regia OX=51240 GN=LOC109020204 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVDQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFV+QLVKWDA+LQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLEKAKAANERRYFVVGHGINAVLMKV 90
          DKML KAKAANERRYF +    ++    V
Sbjct: 61 DKMLAKAKAANERRYFGISFSFSSSFFSV 89

The following BLAST results are available for this feature:

BLAST of Carg14920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926916.1	7.6e-36	100.00	uncharacterized protein LOC111433888 [Cucurbita moschata] >XP_023517952.1 unchar...	[more]
OWM75155.1	1.7e-35	81.72	hypothetical protein CDL15_Pgr012641 [Punica granatum]	[more]
XP_023003551.1	2.9e-35	98.68	uncharacterized protein LOC111497120 [Cucurbita maxima]	[more]
XP_022158610.1	8.4e-35	96.05	uncharacterized protein LOC111025064 [Momordica charantia]	[more]
PKI58364.1	8.4e-35	93.59	hypothetical protein CRG98_021239 [Punica granatum]	[more]

BLAST of Carg14920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20150.1	1.9e-33	86.84	unknown protein	[more]

BLAST of Carg14920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A218WQS1\|A0A218WQS1_PUNGR	1.1e-35	81.72	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012641 PE=4 SV=1	[more]
tr\|A0A2I0JPZ2\|A0A2I0JPZ2_PUNGR	5.5e-35	93.59	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021239 PE=4 SV=1	[more]
tr\|A0A1S3AYR6\|A0A1S3AYR6_CUCME	9.4e-35	96.05	uncharacterized protein LOC103484235 OS=Cucumis melo OX=3656 GN=LOC103484235 PE=...	[more]
tr\|A0A0A0KJ47\|A0A0A0KJ47_CUCSA	9.4e-35	96.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1	[more]
tr\|A0A2I4HPW2\|A0A2I4HPW2_9ROSI	1.2e-34	83.15	uncharacterized protein LOC109020204 OS=Juglans regia OX=51240 GN=LOC109020204 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14920-RA	Carg14920-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	PANTHER	PTHR36052	FAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14920	Cla009906	Watermelon (97103) v1	carwmB0730
Carg14920	Csa6G538720	Cucumber (Chinese Long) v2	carcuB0748
Carg14920	MELO3C006999	Melon (DHL92) v3.5.1	carmeB0725
Carg14920	ClCG01G025920	Watermelon (Charleston Gray)	carwcgB0707
Carg14920	CSPI06G37650	Wild cucumber (PI 183967)	carcpiB0764
Carg14920	Cucsa.049000	Cucumber (Gy14) v1	carcgyB0822
Carg14920	CmaCh07G000060	Cucurbita maxima (Rimu)	carcmaB1024
Carg14920	CmoCh07G000080	Cucurbita moschata (Rifu)	carcmoB0996
Carg14920	Lsi01G000080	Bottle gourd (USVL1VR-Ls)	carlsiB669
Carg14920	Cp4.1LG19g05260	Cucurbita pepo (Zucchini)	carcpeB1029
Carg14920	CsGy6G037030	Cucumber (Gy14) v2	carcgybB0726
Carg14920	MELO3C006999.2	Melon (DHL92) v3.6.1	carmedB0736
Carg14920	CsaV3_6G053130	Cucumber (Chinese Long) v3	carcucB0767
Carg14920	Cla97C01G026070	Watermelon (97103) v2	carwmbB0764
Carg14920	BhiUN587G11	Wax gourd	carwgoB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14920	Silver-seed gourd	carcarB593
Carg14920	Cucurbita maxima (Rimu)	carcmaB1023
Carg14920	Cucurbita moschata (Rifu)	carcmoB0995
Carg14920	Cucurbita pepo (Zucchini)	carcpeB1028