Cucsa.398280 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.398280
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold04158 : 871302 .. 871647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCATAGTTTTCCTCTCTCTTCTTCCATAATAATAATATGGCAGCTCCTCCTTCTGCCATTCTCAGCGTCGTCCTGGTGGCTCTGCTGCTCATTTGTGTTGCTAATGCACACGAGGGCCACGCACATCCTCCGTCCTCCGAGCACCATCTTGCCCCTCCACCCCAACACAGCGCAGCCATCATCAACAGTCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTGCATCTTGGATAATATTGTTTTAGTTATTTTAATCTTACTGTGTAAAACTTCAATTCCTGCATGAAGTTCACATTTCTGTTTAATTAATTATTTTGCCTATTTTCGCTTACTGTAC

mRNA sequence

TGCCATAGTTTTCCTCTCTCTTCTTCCATAATAATAATATGGCAGCTCCTCCTTCTGCCATTCTCAGCGTCGTCCTGGTGGCTCTGCTGCTCATTTGTGTTGCTAATGCACACGAGGGCCACGCACATCCTCCGTCCTCCGAGCACCATCTTGCCCCTCCACCCCAACACAGCGCAGCCATCATCAACAGTCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTGCATCTTGGATAATATTGTTTTAGTTATTTTAATCTTACTGTGTAAAACTTCAATTCCTGCATGAAGTTCACATTTCTGTTTAATTAATTATTTTGCCTATTTTCGCTTACTGTAC

Coding sequence (CDS)

ATGGCAGCTCCTCCTTCTGCCATTCTCAGCGTCGTCCTGGTGGCTCTGCTGCTCATTTGTGTTGCTAATGCACACGAGGGCCACGCACATCCTCCGTCCTCCGAGCACCATCTTGCCCCTCCACCCCAACACAGCGCAGCCATCATCAACAGTCTTTCATACTTTTGGTCTATGGCAATGGCCATGGTGGCTGCATCTTGGATAATATTGTTTTAG

Protein sequence

MAAPPSAILSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAMAMVAASWIILF*
Homology
[Close]
BLAST of Cucsa.398280 vs. TrEMBL
Match: A0A0A0KVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-32
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MAAPPSAILSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60
          MAAPPSA+LSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWIILF 72
          AMVAASWIILF
Sbjct: 61 AMVAASWIILF 71

[Close]
BLAST of Cucsa.398280 vs. NCBI nr
Match: gi|700198567|gb|KGN53725.1| (hypothetical protein Csa_4G111600 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-32
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MAAPPSAILSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60
          MAAPPSA+LSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWIILF 72
          AMVAASWIILF
Sbjct: 61 AMVAASWIILF 71

The following BLAST results are available for this feature:
BLAST of Cucsa.398280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVS3_CUCSA1.8e-3298.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1[more]
BLAST of Cucsa.398280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198567|gb|KGN53725.1|2.6e-3298.59hypothetical protein Csa_4G111600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.398280.1Cucsa.398280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.398280Csa4G111600Cucumber (Chinese Long) v2cgycuB556
Cucsa.398280CSPI04G09390Wild cucumber (PI 183967)cgycpiB585
Cucsa.398280Cp4.1LG14g05130Cucurbita pepo (Zucchini)cgycpeB1052
Cucsa.398280CsaV3_4G009590Cucumber (Chinese Long) v3cgycucB604
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.398280Melon (DHL92) v3.6.1cgymedB649
Cucsa.398280Silver-seed gourdcarcgyB0442
Cucsa.398280Silver-seed gourdcarcgyB0994
Cucsa.398280Watermelon (97103) v2cgywmbB680
Cucsa.398280Wax gourdcgywgoB792
Cucsa.398280Cucurbita maxima (Rimu)cgycmaB1103
Cucsa.398280Cucurbita maxima (Rimu)cgycmaB1101
Cucsa.398280Cucurbita moschata (Rifu)cgycmoB1102
Cucsa.398280Cucurbita moschata (Rifu)cgycmoB1100
Cucsa.398280Melon (DHL92) v3.5.1cgymeB653
Cucsa.398280Watermelon (Charleston Gray)cgywcgB678
Cucsa.398280Watermelon (97103) v1cgywmB714
Cucsa.398280Cucurbita pepo (Zucchini)cgycpeB1054
Cucsa.398280Bottle gourd (USVL1VR-Ls)cgylsiB641