Cp4.1LG14g05130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 1136791 .. 1137006 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

mRNA sequence

ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

Coding sequence (CDS)

ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

Protein sequence

MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMAIAMVASSWMLF
Homology
[Close]
BLAST of Cp4.1LG14g05130 vs. TrEMBL
Match: A0A0A0KVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-17
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAA PSAVL+VVLV +LL+ VA AHEGH HPPSS  H+APPP+H+AA  +NSLSYFWSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAI-INSLSYFWSMA 60

Query: 61 IAMVASSWML 71
          +AMVA+SW++
Sbjct: 61 MAMVAASWII 69

[Close]
BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: gi|700198567|gb|KGN53725.1| (hypothetical protein Csa_4G111600 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAA PSAVL+VVLV +LL+ VA AHEGH HPPSS  H+APPP+H+AA  +NSLSYFWSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAI-INSLSYFWSMA 60

Query: 61 IAMVASSWML 71
          +AMVA+SW++
Sbjct: 61 MAMVAASWII 69

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVS3_CUCSA1.6e-1771.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1[more]
BLAST of Cp4.1LG14g05130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198567|gb|KGN53725.1|2.3e-1771.43hypothetical protein Csa_4G111600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009231 riboflavin biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function GO:0003935 GTP cyclohydrolase II activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05130.1Cp4.1LG14g05130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05130Cucsa.398280Cucumber (Gy14) v1cgycpeB1052
Cp4.1LG14g05130Csa4G111600Cucumber (Chinese Long) v2cpecuB222
Cp4.1LG14g05130CSPI04G09390Wild cucumber (PI 183967)cpecpiB224
Cp4.1LG14g05130CsaV3_4G009590Cucumber (Chinese Long) v3cpecucB0267
Cp4.1LG14g05130Carg08077Silver-seed gourdcarcpeB0524
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05130Silver-seed gourdcarcpeB0523
Cp4.1LG14g05130Silver-seed gourdcarcpeB0525
Cp4.1LG14g05130Silver-seed gourdcarcpeB1215
Cp4.1LG14g05130Cucumber (Chinese Long) v3cpecucB0262
Cp4.1LG14g05130Wax gourdcpewgoB0266
Cp4.1LG14g05130Wax gourdcpewgoB0282
Cp4.1LG14g05130Wax gourdcpewgoB0299
Cp4.1LG14g05130Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05130Cucurbita pepo (Zucchini)cpecpeB238
Cp4.1LG14g05130Cucumber (Gy14) v1cgycpeB0187
Cp4.1LG14g05130Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05130Cucurbita maxima (Rimu)cmacpeB346
Cp4.1LG14g05130Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05130Cucurbita maxima (Rimu)cmacpeB718
Cp4.1LG14g05130Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05130Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g05130Cucurbita moschata (Rifu)cmocpeB671
Cp4.1LG14g05130Wild cucumber (PI 183967)cpecpiB220
Cp4.1LG14g05130Cucumber (Chinese Long) v2cpecuB218
Cp4.1LG14g05130Bottle gourd (USVL1VR-Ls)cpelsiB168
Cp4.1LG14g05130Bottle gourd (USVL1VR-Ls)cpelsiB169
Cp4.1LG14g05130Watermelon (Charleston Gray)cpewcgB190
Cp4.1LG14g05130Watermelon (Charleston Gray)cpewcgB196
Cp4.1LG14g05130Watermelon (Charleston Gray)cpewcgB211
Cp4.1LG14g05130Watermelon (97103) v1cpewmB204
Cp4.1LG14g05130Watermelon (97103) v1cpewmB215
Cp4.1LG14g05130Watermelon (97103) v1cpewmB224
Cp4.1LG14g05130Melon (DHL92) v3.5.1cpemeB202
Cp4.1LG14g05130Melon (DHL92) v3.5.1cpemeB198
Cp4.1LG14g05130Cucumber (Gy14) v2cgybcpeB484
Cp4.1LG14g05130Cucumber (Gy14) v2cgybcpeB488
Cp4.1LG14g05130Melon (DHL92) v3.6.1cpemedB244
Cp4.1LG14g05130Melon (DHL92) v3.6.1cpemedB240