Cucsa.394320 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.394320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPlant protein 1589 of Uncharacterized protein function
Locationscaffold04100 : 312471 .. 312914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACCGCCCCAACAGCCACCACTTTCTTCCTTGTTTTCATTGCCAACCCCATGCCTATATCCGGATGGTACTGCTTTTCTCTTTCTTTCACCAATTGTAACTGTTAAAATCTTGGATTTTtCTTTTTtATCATTTCAATTAATTTTGCAGGTCCAGCATCTGATAGAGAGATGCTTGCTGCTTCATATGAGTCGAGATGAGTGCGTGAAGGCATTGGCTGACCATGCAAATATCCGTCCTCTCATTACACTTACAGGTCCGTATATACAAATACTCCTTTTAAACTTTGTGAATCAAAATTTAATTTGTTATTCAATTATCTAAATTAAGCTATTCTGGGGCTTTTTtTtAATTAACCTGCCAGTGTGGAAGGAGCTCCAGAAAGAGAACTCTGACTTCTTCCGAGCATATTTCCATACCATTTCTCCCAATCCATTCCTCG

mRNA sequence

ATGTACCGCCCCAACAGCCACCACTTTCTTCCTTGTTTTCATTGCCAACCCCATGCCTATATCCGGATGGTCCAGCATCTGATAGAGAGATGCTTGCTGCTTCATATGAGTCGAGATGAGTGCGTGAAGGCATTGGCTGACCATGCAAATATCCGTCCTCTCATTACACTTACAGTGTGGAAGGAGCTCCAGAAAGAGAACTCTGACTTCTTCCGAGCATATTTCCATACCATTTCTCCCAATCCATTCCTCG

Coding sequence (CDS)

ATGTACCGCCCCAACAGCCACCACTTTCTTCCTTGTTTTCATTGCCAACCCCATGCCTATATCCGGATGGTCCAGCATCTGATAGAGAGATGCTTGCTGCTTCATATGAGTCGAGATGAGTGCGTGAAGGCATTGGCTGACCATGCAAATATCCGTCCTCTCATTACACTTACAGTGTGGAAGGAGCTCCAGAAAGAGAACTCTGACTTCTTCCGAGCATATTTCCATACCATTTCTCCCAATCCATTCCTCG

Protein sequence

MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKELQKENSDFFRAYFHTISPNPFLX
Homology
[Close]
BLAST of Cucsa.394320 vs. TrEMBL
Match: A0A0A0LMP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348860 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW
Sbjct: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          KELQKENSDFFRAYFHTISPNPFL
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]
BLAST of Cucsa.394320 vs. TrEMBL
Match: V4TNX6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA+IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. TrEMBL
Match: V4TE37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA+IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. TrEMBL
Match: A0A067GRL2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. TrEMBL
Match: A0A067GRW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. TAIR10
Match: AT1G10657.1 (AT1G10657.1 Plant protein 1589 of unknown function)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-26
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 5   NSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLT------ 64
           + H+ LPC HCQPH+YIRMVQH+IERC+LL M+RDECVKAL  HA+I PL+TLT      
Sbjct: 8   SQHNNLPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVFSYIL 67

Query: 65  ------------------VWKELQKENSDFFRAYFHTISPNPFL 85
                             VW+ LQ+EN DFF  Y H +SP PFL
Sbjct: 68  GFASVLQKKLHDIFPPPAVWRGLQRENKDFFETYGHFVSPRPFL 111

[Close]
BLAST of Cucsa.394320 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-19
Identity = 38/56 (67.86%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 19 AYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKELQKENSDFFRAY 75
          +YI MVQH+IE+CL+ HMS++ECV+AL+ HANI P+IT TVWKEL+KEN +FF+AY
Sbjct: 8  SYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAY 63

[Close]
BLAST of Cucsa.394320 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-17
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 14 HCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKELQKENSDFFRA 73
          H  P  YI +VQH+IE CL  +MS++EC++AL+++ANI P+IT TVWKEL KEN DFF  
Sbjct: 3  HSSPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFET 62

Query: 74 Y 75
          Y
Sbjct: 63 Y 63

[Close]
BLAST of Cucsa.394320 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 19 AYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKELQKENSDFFRAY 75
          +YI +V HLIE C++ +M ++EC+ AL  HANI+P+IT TVWKEL KEN +FF AY
Sbjct: 10 SYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAY 65

[Close]
BLAST of Cucsa.394320 vs. TAIR10
Match: AT3G61700.2 (AT3G61700.2 Plant protein 1589 of unknown function)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 21  IRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKELQKENSDFFRAYF 76
           I +VQ+LIERCL L+M+RDE VK L   A I P  T  VW++L++EN+DFFRAY+
Sbjct: 55  IELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYY 109

[Close]
BLAST of Cucsa.394320 vs. NCBI nr
Match: gi|778670504|ref|XP_004143067.2| (PREDICTED: uncharacterized protein LOC101211262 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW
Sbjct: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          KELQKENSDFFRAYFHTISPNPFL
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]
BLAST of Cucsa.394320 vs. NCBI nr
Match: gi|659087244|ref|XP_008444348.1| (PREDICTED: uncharacterized protein LOC103487701 isoform X2 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 8.6e-43
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYRPN HHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALA HANIRPLITLTVW
Sbjct: 1  MYRPNRHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          KELQKENSDFFRAYFHTISPNPFL
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]
BLAST of Cucsa.394320 vs. NCBI nr
Match: gi|567891623|ref|XP_006438332.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina])

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA+IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. NCBI nr
Match: gi|567891621|ref|XP_006438331.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina])

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA+IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

[Close]
BLAST of Cucsa.394320 vs. NCBI nr
Match: gi|641863672|gb|KDO82358.1| (hypothetical protein CISIN_1g034241mg [Citrus sinensis])

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60
          MYR  +HHF PC HC PH+YIRMVQHLIERCLLLHMSRD+C+KALA+HA IRPL+TLTVW
Sbjct: 1  MYR--NHHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVW 60

Query: 61 KELQKENSDFFRAYFHTISPNPFL 85
          +ELQKEN DFFRAYFH+ISP PF+
Sbjct: 61 RELQKENKDFFRAYFHSISPRPFM 82

The following BLAST results are available for this feature:
BLAST of Cucsa.394320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMP2_CUCSA2.4e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348860 PE=4 SV=1[more]
V4TNX6_9ROSI4.6e-3579.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1[more]
V4TE37_9ROSI4.6e-3579.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1[more]
A0A067GRL2_CITSI6.0e-3579.76Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1[more]
A0A067GRW0_CITSI6.0e-3579.76Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1[more]
BLAST of Cucsa.394320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10657.12.0e-2652.88 Plant protein 1589 of unknown function[more]
AT3G55240.13.1e-1967.86 Plant protein 1589 of unknown function[more]
AT3G28990.12.3e-1759.02 Plant protein 1589 of unknown function[more]
AT5G02580.11.2e-1558.93 Plant protein 1589 of unknown function[more]
AT3G61700.21.3e-1258.18 Plant protein 1589 of unknown function[more]
BLAST of Cucsa.394320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778670504|ref|XP_004143067.2|3.5e-44100.00PREDICTED: uncharacterized protein LOC101211262 [Cucumis sativus][more]
gi|659087244|ref|XP_008444348.1|8.6e-4397.62PREDICTED: uncharacterized protein LOC103487701 isoform X2 [Cucumis melo][more]
gi|567891623|ref|XP_006438332.1|6.6e-3579.76hypothetical protein CICLE_v10033163mg [Citrus clementina][more]
gi|567891621|ref|XP_006438331.1|6.6e-3579.76hypothetical protein CICLE_v10033163mg [Citrus clementina][more]
gi|641863672|gb|KDO82358.1|8.6e-3579.76hypothetical protein CISIN_1g034241mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.394320.1Cucsa.394320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 24..74
score: 2.8
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMsTIGR01589TIGR01589coord: 21..74
score: 5.5
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..84
score: 3.7
NoneNo IPR availablePANTHERPTHR31871:SF5SUBFAMILY NOT NAMEDcoord: 1..84
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.394320Cla000806Watermelon (97103) v1cgywmB705
Cucsa.394320Csa2G348860Cucumber (Chinese Long) v2cgycuB549
Cucsa.394320MELO3C010673Melon (DHL92) v3.5.1cgymeB646
Cucsa.394320ClCG08G017900Watermelon (Charleston Gray)cgywcgB674
Cucsa.394320CSPI02G17120Wild cucumber (PI 183967)cgycpiB578
Cucsa.394320CmaCh12G000200Cucurbita maxima (Rimu)cgycmaB1087
Cucsa.394320CmaCh05G000210Cucurbita maxima (Rimu)cgycmaB1094
Cucsa.394320CmoCh12G000150Cucurbita moschata (Rifu)cgycmoB1085
Cucsa.394320CmoCh05G000280Cucurbita moschata (Rifu)cgycmoB1093
Cucsa.394320Cp4.1LG07g00250Cucurbita pepo (Zucchini)cgycpeB1045
Cucsa.394320Cp4.1LG11g00780Cucurbita pepo (Zucchini)cgycpeB1039
Cucsa.394320MELO3C010673.2Melon (DHL92) v3.6.1cgymedB641
Cucsa.394320CsaV3_2G024740Cucumber (Chinese Long) v3cgycucB596
Cucsa.394320Cla97C08G161650Watermelon (97103) v2cgywmbB676
Cucsa.394320Bhi04G000543Wax gourdcgywgoB782
Cucsa.394320Carg20504Silver-seed gourdcarcgyB0700
Cucsa.394320Carg21818Silver-seed gourdcarcgyB0576
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.394320Watermelon (97103) v2cgywmbB673
Cucsa.394320Wax gourdcgywgoB787
Cucsa.394320Cucumber (Gy14) v1cgycgyB139
Cucsa.394320Cucurbita maxima (Rimu)cgycmaB1090
Cucsa.394320Cucurbita maxima (Rimu)cgycmaB1093
Cucsa.394320Cucurbita moschata (Rifu)cgycmoB1088
Cucsa.394320Cucurbita moschata (Rifu)cgycmoB1092
Cucsa.394320Wild cucumber (PI 183967)cgycpiB580
Cucsa.394320Cucumber (Chinese Long) v2cgycuB551
Cucsa.394320Melon (DHL92) v3.5.1cgymeB643
Cucsa.394320Watermelon (Charleston Gray)cgywcgB671
Cucsa.394320Watermelon (97103) v1cgywmB708
Cucsa.394320Cucurbita pepo (Zucchini)cgycpeB1037
Cucsa.394320Cucurbita pepo (Zucchini)cgycpeB1041
Cucsa.394320Bottle gourd (USVL1VR-Ls)cgylsiB636
Cucsa.394320Bottle gourd (USVL1VR-Ls)cgylsiB637
Cucsa.394320Melon (DHL92) v3.6.1cgymedB637
Cucsa.394320Silver-seed gourdcarcgyB0817
Cucsa.394320Cucumber (Chinese Long) v3cgycucB598