CmaCh12G000200 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCTTTTGTTCTCTTCGCATTCTGTTACTCTCTGTGTATTGATCATCAAACATTTCCTTCTTTTCGCTGTATATGTACTTCCATATCCTATTGGTTTTGTCCCATTCTGGCTACCTCATTTTTTGAGTGAACGGAGACATTATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGGTACTGCCTCTCTCTCTCTCTCTCCCTTTCACAAATGTGCACACTACATTGCATATACATATATATAAATCCTTGCAGTTTAGTGATGTTTAATTTATTGGTATATAACTCTTCAGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGGTCCTCACTTTGAATCAAATAACATACCCTTTTGTTATGTATTTTCAGATCACTCTCTCAGCTTCAATCTAAGCTATTGGGTTGTGGTTGCAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTATGATCCTTTTTCTGATTGCATATCATTTAGTGATTGCTCTCGACTCTTTTCTCATGCGCACGCGGTACTAAGTGGGTCCATCTCAAATGACTAATACCAAAATAGGAATATATTGTTCTTAAAATGTTTAGACTCAATTTTACGTGATCTTAAATTTGCACCTATTTACAGCCAAATTCAGGAGGAGTGTTCCTACAATAACGAGGAGAAGGCAACGTCACTGGAGATGAGGGATAATATGCAGTCTGTAATATGCTGATTAATTTATTTTCCTTGTTTCTACATATCGAGTGTGAGTCCAGGGGAACTAATAATAGTCTTTAATATTATATCAATTATCCAAGTTTATAATTTGATGGATGCTTTCTTTATAATATAATTTGATTCATTATTCGCTGAGAATTTGTTTTCATCATAACACCAACCACACTACAATGTACCATATTGTTTTGGAATTATCAGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGTAACACAGCTAGTAAATGTCTTTAATTCCATACGGAGCTTTGTCCTAGCCTCCACAATAGAATTATATTATTCACACAGACTCTCATGTTTTTTTTGTTTTCTAGGAGGTCTCTGA CCTTTTGTTCTCTTCGCATTCTGTTACTCTCTGTGTATTGATCATCAAACATTTCCTTCTTTTCGCTGTATATGTACTTCCATATCCTATTGGTTTTGTCCCATTCTGGCTACCTCATTTTTTGAGTGAACGGAGACATTATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGAGGTCTCTGA ATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGAGGTCTCTGA MHPNAHHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRAYLRTIPRKPFLGTKMLDHSVLTLVHNLQEKTEGRGFKIPNLFYRLQHKTLTQLHNISNNNSRYYSNSRNLNHGGL
BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A0A0LMP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348860 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 4.3e-33 Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TrEMBL
Match: V4TE37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29 Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TrEMBL
Match: V4TNX6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29 Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A067GRL2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28 Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A067GRW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28 Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TAIR10
Match: AT1G10657.1 (AT1G10657.1 Plant protein 1589 of unknown function) HSP 1 Score: 94.7 bits (234), Expect = 4.9e-20 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function) HSP 1 Score: 88.2 bits (217), Expect = 4.6e-18 Identity = 35/56 (62.50%), Postives = 50/56 (89.29%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function) HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15 Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function) HSP 1 Score: 78.2 bits (191), Expect = 4.8e-15 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
BLAST of CmaCh12G000200 vs. TAIR10
Match: AT2G46420.1 (AT2G46420.1 Plant protein 1589 of unknown function) HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12 Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|778670504|ref|XP_004143067.2| (PREDICTED: uncharacterized protein LOC101211262 [Cucumis sativus]) HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33 Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1
BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|659087244|ref|XP_008444348.1| (PREDICTED: uncharacterized protein LOC103487701 isoform X2 [Cucumis melo]) HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33 Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 1
BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|567891621|ref|XP_006438331.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina]) HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28 Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|567891623|ref|XP_006438332.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina]) HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28 Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|641863672|gb|KDO82358.1| (hypothetical protein CISIN_1g034241mg [Citrus sinensis]) HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28 Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |