CmaCh12G000200 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G000200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant protein 1589 of Uncharacterized protein function
LocationCma_Chr12 : 81012 .. 82375 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTTGTTCTCTTCGCATTCTGTTACTCTCTGTGTATTGATCATCAAACATTTCCTTCTTTTCGCTGTATATGTACTTCCATATCCTATTGGTTTTGTCCCATTCTGGCTACCTCATTTTTTGAGTGAACGGAGACATTATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGGTACTGCCTCTCTCTCTCTCTCTCCCTTTCACAAATGTGCACACTACATTGCATATACATATATATAAATCCTTGCAGTTTAGTGATGTTTAATTTATTGGTATATAACTCTTCAGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGGTCCTCACTTTGAATCAAATAACATACCCTTTTGTTATGTATTTTCAGATCACTCTCTCAGCTTCAATCTAAGCTATTGGGTTGTGGTTGCAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTATGATCCTTTTTCTGATTGCATATCATTTAGTGATTGCTCTCGACTCTTTTCTCATGCGCACGCGGTACTAAGTGGGTCCATCTCAAATGACTAATACCAAAATAGGAATATATTGTTCTTAAAATGTTTAGACTCAATTTTACGTGATCTTAAATTTGCACCTATTTACAGCCAAATTCAGGAGGAGTGTTCCTACAATAACGAGGAGAAGGCAACGTCACTGGAGATGAGGGATAATATGCAGTCTGTAATATGCTGATTAATTTATTTTCCTTGTTTCTACATATCGAGTGTGAGTCCAGGGGAACTAATAATAGTCTTTAATATTATATCAATTATCCAAGTTTATAATTTGATGGATGCTTTCTTTATAATATAATTTGATTCATTATTCGCTGAGAATTTGTTTTCATCATAACACCAACCACACTACAATGTACCATATTGTTTTGGAATTATCAGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGTAACACAGCTAGTAAATGTCTTTAATTCCATACGGAGCTTTGTCCTAGCCTCCACAATAGAATTATATTATTCACACAGACTCTCATGTTTTTTTTGTTTTCTAGGAGGTCTCTGA

mRNA sequence

CCTTTTGTTCTCTTCGCATTCTGTTACTCTCTGTGTATTGATCATCAAACATTTCCTTCTTTTCGCTGTATATGTACTTCCATATCCTATTGGTTTTGTCCCATTCTGGCTACCTCATTTTTTGAGTGAACGGAGACATTATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGAGGTCTCTGA

Coding sequence (CDS)

ATGCACCCTAACGCCCACCACTTTCTTCCTTGTTTTCACTGCCACCCCCATGCCCATGTCCGGACGATCCAACATCTGATAGAGAGATGCTTGCTGCTTCATATGAGCCGAGATGAGTGCGTCAAGGCCCTGGCTCGCCATGCAAACATTCGCCCTCTCATAACACTCACAGTGTGGAAAGAGCTTCAGAAAGAGAACACTGAATTTTTCCGTGCATATTTGCGTACTATTCCTCGCAAGCCATTCCTGGGTACCAAAATGCTCGACCATTCAGTGCTCACACTCGTACATAATCTCCAGGAAAAAACTGAAGGAAGAGGCTTTAAAATCCCAAACCTGTTTTACAGGCTTCAACATAAAACTCTTACACAACTGCATAACATATCCAACAATAATAGCAGATACTATTCGAACAGCCGCAACCTCAATCATGGAGGTCTCTGA

Protein sequence

MHPNAHHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRAYLRTIPRKPFLGTKMLDHSVLTLVHNLQEKTEGRGFKIPNLFYRLQHKTLTQLHNISNNNSRYYSNSRNLNHGGL
BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A0A0LMP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348860 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1

Query: 3  PNAHHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKEL 62
          PN+HHFLPCFHC PHA++R +QHLIERCLLLHMSRDECVKALA HANIRPLITLTVWKEL
Sbjct: 4  PNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKEL 63

Query: 63 QKENTEFFRAYLRTIPRKPFL 84
          QKEN++FFRAY  TI   PFL
Sbjct: 64 QKENSDFFRAYFHTISPNPFL 84

BLAST of CmaCh12G000200 vs. TrEMBL
Match: V4TE37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA+IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. TrEMBL
Match: V4TNX6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA+IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A067GRL2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. TrEMBL
Match: A0A067GRW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. TAIR10
Match: AT1G10657.1 (AT1G10657.1 Plant protein 1589 of unknown function)

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-20
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1

Query: 6   HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLT-------- 65
           H+ LPC HC PH+++R +QH+IERC+LL M+RDECVKAL  HA+I PL+TLT        
Sbjct: 10  HNNLPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVFSYILGF 69

Query: 66  ----------------VWKELQKENTEFFRAYLRTIPRKPFL 84
                           VW+ LQ+EN +FF  Y   +  +PFL
Sbjct: 70  ASVLQKKLHDIFPPPAVWRGLQRENKDFFETYGHFVSPRPFL 111

BLAST of CmaCh12G000200 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function)

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-18
Identity = 35/56 (62.50%), Postives = 50/56 (89.29%), Query Frame = 1

Query: 18 AHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRAY 74
          +++  +QH+IE+CL+ HMS++ECV+AL++HANI P+IT TVWKEL+KEN EFF+AY
Sbjct: 8  SYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAY 63

BLAST of CmaCh12G000200 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1

Query: 13 HCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRA 72
          H  P  ++  +QH+IE CL  +MS++EC++AL+ +ANI P+IT TVWKEL KEN +FF  
Sbjct: 3  HSSPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFET 62

Query: 73 YLRTIPRKPFLG---TKMLDHSVLTL 96
          Y + + +K  +    T  L  ++++L
Sbjct: 63 YEQKLMKKESMSEEETNQLIQNIISL 88

BLAST of CmaCh12G000200 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function)

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-15
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1

Query: 18 AHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRAYLR 76
          +++  + HLIE C++ +M ++EC+ AL +HANI+P+IT TVWKEL KEN EFF AY R
Sbjct: 10 SYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYER 67

BLAST of CmaCh12G000200 vs. TAIR10
Match: AT2G46420.1 (AT2G46420.1 Plant protein 1589 of unknown function)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 20  VRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKENTEFFRAYLRTIPR 79
           +  +Q+LIERCL L+MSRDE VK L   A I P  T  VW++L++EN EFFRAY   +  
Sbjct: 52  IELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYYIRLKL 111

Query: 80  KP--FLGTKMLDHSVLTLVHNLQEK 103
           K    +   +L+H      +N+  K
Sbjct: 112 KKQIVVFNHLLEHQYHLTKYNVHSK 136

BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|778670504|ref|XP_004143067.2| (PREDICTED: uncharacterized protein LOC101211262 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1

Query: 3  PNAHHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKEL 62
          PN+HHFLPCFHC PHA++R +QHLIERCLLLHMSRDECVKALA HANIRPLITLTVWKEL
Sbjct: 4  PNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVWKEL 63

Query: 63 QKENTEFFRAYLRTIPRKPFL 84
          QKEN++FFRAY  TI   PFL
Sbjct: 64 QKENSDFFRAYFHTISPNPFL 84

BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|659087244|ref|XP_008444348.1| (PREDICTED: uncharacterized protein LOC103487701 isoform X2 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 1

Query: 3  PNAHHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKEL 62
          PN HHFLPCFHC PHA++R +QHLIERCLLLHMSRDECVKALA HANIRPLITLTVWKEL
Sbjct: 4  PNRHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKEL 63

Query: 63 QKENTEFFRAYLRTIPRKPFL 84
          QKEN++FFRAY  TI   PFL
Sbjct: 64 QKENSDFFRAYFHTISPNPFL 84

BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|567891621|ref|XP_006438331.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA+IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|567891623|ref|XP_006438332.1| (hypothetical protein CICLE_v10033163mg [Citrus clementina])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA+IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHASIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

BLAST of CmaCh12G000200 vs. NCBI nr
Match: gi|641863672|gb|KDO82358.1| (hypothetical protein CISIN_1g034241mg [Citrus sinensis])

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 6  HHFLPCFHCHPHAHVRTIQHLIERCLLLHMSRDECVKALARHANIRPLITLTVWKELQKE 65
          HHF PC HCHPH+++R +QHLIERCLLLHMSRD+C+KALA HA IRPL+TLTVW+ELQKE
Sbjct: 5  HHFFPCLHCHPHSYIRMVQHLIERCLLLHMSRDQCIKALAEHAGIRPLVTLTVWRELQKE 64

Query: 66 NTEFFRAYLRTIPRKPFL 84
          N +FFRAY  +I  +PF+
Sbjct: 65 NKDFFRAYFHSISPRPFM 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMP2_CUCSA4.3e-3382.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348860 PE=4 SV=1[more]
V4TE37_9ROSI8.5e-2971.79Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1[more]
V4TNX6_9ROSI8.5e-2971.79Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033163mg PE=4 SV=1[more]
A0A067GRL2_CITSI1.1e-2871.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1[more]
A0A067GRW0_CITSI1.1e-2871.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034241mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G10657.14.9e-2045.10 Plant protein 1589 of unknown function[more]
AT3G55240.14.6e-1862.50 Plant protein 1589 of unknown function[more]
AT3G28990.12.1e-1541.86 Plant protein 1589 of unknown function[more]
AT5G02580.14.8e-1555.17 Plant protein 1589 of unknown function[more]
AT2G46420.13.8e-1242.35 Plant protein 1589 of unknown function[more]
Match NameE-valueIdentityDescription
gi|778670504|ref|XP_004143067.2|6.2e-3382.72PREDICTED: uncharacterized protein LOC101211262 [Cucumis sativus][more]
gi|659087244|ref|XP_008444348.1|6.2e-3382.72PREDICTED: uncharacterized protein LOC103487701 isoform X2 [Cucumis melo][more]
gi|567891621|ref|XP_006438331.1|1.2e-2871.79hypothetical protein CICLE_v10033163mg [Citrus clementina][more]
gi|567891623|ref|XP_006438332.1|1.2e-2871.79hypothetical protein CICLE_v10033163mg [Citrus clementina][more]
gi|641863672|gb|KDO82358.1|1.6e-2871.79hypothetical protein CISIN_1g034241mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G000200.1CmaCh12G000200.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 23..73
score: 4.3
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMsTIGR01589TIGR01589coord: 21..73
score: 7.1
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..83
score: 4.2
NoneNo IPR availablePANTHERPTHR31871:SF5SUBFAMILY NOT NAMEDcoord: 1..83
score: 4.2

The following gene(s) are paralogous to this gene:

None