Cucsa.388250 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.388250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Fanconi anemia group D2 protein, putative
Location	scaffold03967 : 701731 .. 702576 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTATCGATGTTCTCTTTCATCTGATGCAAGTTTTGTTTCCACCCTTCAATTTTTCGCCTACTTTCACTTTCCATGAAGGTTTTCTGATCCTTGATTTTTTCCCCTCTCTTGATACAGATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGGTATTTCTCTTATTGTGTTACTGATGGAGCTTGAAACGTAAATACAGAGCTGTTGGTTTTTATGTGCAATGTGTTTATATCTTTTGCTGATGCAAAATTGAGACGGAGAAAAGAGTCGGACTTTCAACCATGGTAAATTTATTTTATTTTTtATTTAGAGGGTAAAATGTGACGTGCAAAATAAAGGGAAATCTGTAAACTGGTGTAGTTCTTGCAACACACTCCAGTGCTTAAGTTATAGACTGGAAAAGGGTAGAAGCCCTAGGATTTGAGAGTGAGACCTTACTCGAAGCTATAACGATCTAATTATTAATAGAAGACTTAGGTTATCCTCTATAGAGTTTCGAAGGTAACTCTTTATCTTCTCGAGTTGGGGCGTGGCGGATGCATTGGCCATTTTCCTAGGGCCAAGTTTGAGCACCTTCCTAAAGGCATATTTTGGTCCTGGCACGGTGTCATTGGGTTGGCTCACGCTCGCATATGCCTCGTTAGGCATTTTGTTAGGCTCTGTCAAGCACATCACCTTGGGCCAATGGTCCTAGGGTGCTACTGTTGA

mRNA sequence

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTATCGATGTTCTCTTTCATCTGATATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGgttatcctctatagagtttcgaAGGTAACTCTTTATCTTCTCGAGTTGGGGCGTGGCGGATGCATTGGCCATTTTCCTAGGGCCAAGTTTGAGCACCTTCCTAAAGGCATATTTTGGTCCTGGCACGGTGTCATTGGGTTGGCTCACGCTCGCATATGCCTCGTTAGGCATTTTGTTAGGCTCTGTCAAGCACATCACCTTGGGCCAATGGTCCTAGGGTGCTACTGTTGA

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTATCGATGTTCTCTTTCATCTGATATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGGTTATCCTCTATAGAGTTTCGAAGGTAACTCTTTATCTTCTCGAGTTGGGGCGTGGCGGATGCATTGGCCATTTTCCTAGGGCCAAGTTTGAGCACCTTCCTAAAGGCATATTTTGGTCCTGGCACGGTGTCATTGGGTTGGCTCACGCTCGCATATGCCTCGTTAGGCATTTTGTTAGGCTCTGTCAAGCACATCACCTTGGGCCAATGGTCCTAGGGTGCTACTGTTGA

Protein sequence

MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRNSVSSAEVILYRVSKVTLYLLELGRGGCIGHFPRAKFEHLPKGIFWSWHGVIGLAHARICLVRHFVRLCQAHHLGPMVLGCYC*

Homology

[Close]

BLAST of Cucsa.388250 vs. TrEMBL
Match: A0A0A0K8L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSD---MERSFDALEARISNLESAR 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLAYRC+LSSD   MERSFDALEARISNLESAR
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61 NRNSVSSAE 67
          NRNSVSSAE
Sbjct: 61 NRNSVSSAE 69

[Close]

BLAST of Cucsa.388250 vs. TrEMBL
Match: W9SE36_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018490 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.5e-14
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRL WF++GF+ +AA+IS FVWRDLLA R +LS+DM+  FDALE R+ NLES  ++N
Sbjct: 1  MLRTRLLWFTIGFSVSAATISQFVWRDLLADRYALSTDMKHKFDALEQRVLNLESVPHQN 60

Query: 61 SVSS 65
          S SS
Sbjct: 61 SNSS 64

[Close]

BLAST of Cucsa.388250 vs. TrEMBL
Match: A0A078GRK6_BRANA (BnaC05g44380D protein OS=Brassica napus GN=BnaC05g44380D PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.3e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRL WF+LGF+ T AS++H VWRDL A R ++SSDM+  F ALE+R++ LESA + N
Sbjct: 1  MLRTRLLWFTLGFSVTGASVAHLVWRDLYAERFAISSDMKEKFGALESRVAGLESAGHEN 60

Query: 61 SVSSAEVILY 71
            S A+VI +
Sbjct: 61 P-SPAQVISF 69

[Close]

BLAST of Cucsa.388250 vs. TrEMBL
Match: A0A078HC30_BRANA (BnaA05g30050D protein OS=Brassica napus GN=BnaA05g30050D PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRL WF+LGF+ T AS++H VWRDL A R ++SSDM+  F ALE+R+S LESA + N
Sbjct: 1  MLRTRLLWFTLGFSVTGASVAHLVWRDLYAERFAISSDMKEKFGALESRVSGLESAGHEN 60

[Close]

BLAST of Cucsa.388250 vs. TrEMBL
Match: M5XJJ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019087mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRL WF LGF+ T A+ISH VW+DLL  RC LSSD+++ FDALE RI NLE  R+ +
Sbjct: 1  MLRTRLLWFGLGFSLTGAAISHLVWKDLLVDRCVLSSDVKQKFDALEGRIVNLE--RSLS 60

Query: 61 SVSSAEVILYRV 73
            + A+V  ++V
Sbjct: 61 EPNPAQVHWHQV 70

[Close]

BLAST of Cucsa.388250 vs. TAIR10
Match: AT3G07568.1 (AT3G07568.1 unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRL WF+LGF+ T  SI+H VWRDL A R ++SSDM+  F ALE R+S LES    N
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSDMKEKFSALEGRVSGLESGGYEN 60

[Close]

BLAST of Cucsa.388250 vs. NCBI nr
Match: gi|449462433|ref|XP_004148945.1| (PREDICTED: uncharacterized protein LOC101218167 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLAYRC+LSSDMERSFDALEARISNLESARNRN
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDMERSFDALEARISNLESARNRN 60

Query: 61 SVSSAE 67
          SVSSAE
Sbjct: 61 SVSSAE 66

[Close]

BLAST of Cucsa.388250 vs. NCBI nr
Match: gi|700189479|gb|KGN44712.1| (hypothetical protein Csa_7G374540 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSD---MERSFDALEARISNLESAR 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLAYRC+LSSD   MERSFDALEARISNLESAR
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61 NRNSVSSAE 67
          NRNSVSSAE
Sbjct: 61 NRNSVSSAE 69

[Close]

BLAST of Cucsa.388250 vs. NCBI nr
Match: gi|659092769|ref|XP_008447209.1| (PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA+R +L SDMER+FDALEARISNLES RNRN
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSDMERNFDALEARISNLESVRNRN 60

Query: 61 SVSSAEVI 69
          S+SSAE I
Sbjct: 61 SISSAEEI 68

[Close]

BLAST of Cucsa.388250 vs. NCBI nr
Match: gi|659092777|ref|XP_008447214.1| (PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA+R +L SDMER+FDALEARISNLES RNRN
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSDMERNFDALEARISNLESVRNRN 60

Query: 61 SVSSAE 67
          S+SSAE
Sbjct: 61 SISSAE 66

[Close]

BLAST of Cucsa.388250 vs. NCBI nr
Match: gi|659092781|ref|XP_008447216.1| (PREDICTED: uncharacterized protein LOC103489712 isoform X3 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCSLSSDMERSFDALEARISNLESARNRN 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA+R +L SDMER+FDALEARISNLES RNRN
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSDMERNFDALEARISNLESVRNRN 60

Query: 61 SVSSAE 67
          S+SSAE
Sbjct: 61 SISSAE 66

The following BLAST results are available for this feature:

BLAST of Cucsa.388250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8L3_CUCSA	5.0e-26	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374540 PE=4 SV=1	[more]
W9SE36_9ROSA	7.5e-14	64.06	Uncharacterized protein OS=Morus notabilis GN=L484_018490 PE=4 SV=1	[more]
A0A078GRK6_BRANA	8.3e-13	57.14	BnaC05g44380D protein OS=Brassica napus GN=BnaC05g44380D PE=4 SV=1	[more]
A0A078HC30_BRANA	1.4e-12	61.67	BnaA05g30050D protein OS=Brassica napus GN=BnaA05g30050D PE=4 SV=1	[more]
M5XJJ9_PRUPE	1.8e-12	56.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019087mg PE=4 SV=1	[more]

BLAST of Cucsa.388250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07568.1	1.0e-14	60.00	unknown protein	[more]

BLAST of Cucsa.388250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462433\|ref\|XP_004148945.1\|	1.7e-27	98.48	PREDICTED: uncharacterized protein LOC101218167 [Cucumis sativus]	[more]
gi\|700189479\|gb\|KGN44712.1\|	7.2e-26	94.20	hypothetical protein Csa_7G374540 [Cucumis sativus]	[more]
gi\|659092769\|ref\|XP_008447209.1\|	3.3e-23	85.29	PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo]	[more]
gi\|659092777\|ref\|XP_008447214.1\|	5.7e-23	86.36	PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo]	[more]
gi\|659092781\|ref\|XP_008447216.1\|	5.7e-23	86.36	PREDICTED: uncharacterized protein LOC103489712 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.388250.1	Cucsa.388250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 36..56 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.388250	Csa7G374540	Cucumber (Chinese Long) v2	cgycuB545
Cucsa.388250	MELO3C012717	Melon (DHL92) v3.5.1	cgymeB639
Cucsa.388250	CSPI07G15330	Wild cucumber (PI 183967)	cgycpiB574
Cucsa.388250	MELO3C012717.2	Melon (DHL92) v3.6.1	cgymedB633
Cucsa.388250	CsaV3_7G027090	Cucumber (Chinese Long) v3	cgycucB590
Cucsa.388250	Cla97C09G170610	Watermelon (97103) v2	cgywmbB670
Cucsa.388250	Carg11504	Silver-seed gourd	carcgyB0013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.388250	Wax gourd	cgywgoB778
Cucsa.388250	Cucurbita maxima (Rimu)	cgycmaB1077
Cucsa.388250	Cucurbita maxima (Rimu)	cgycmaB1079
Cucsa.388250	Cucurbita moschata (Rifu)	cgycmoB1076
Cucsa.388250	Cucurbita moschata (Rifu)	cgycmoB1078
Cucsa.388250	Watermelon (Charleston Gray)	cgywcgB667
Cucsa.388250	Watermelon (97103) v1	cgywmB702
Cucsa.388250	Cucurbita pepo (Zucchini)	cgycpeB1027
Cucsa.388250	Cucurbita pepo (Zucchini)	cgycpeB1032
Cucsa.388250	Bottle gourd (USVL1VR-Ls)	cgylsiB631
Cucsa.388250	Melon (DHL92) v3.6.1	cgymedB631
Cucsa.388250	Silver-seed gourd	carcgyB0104