Carg11504 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11504
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Fanconi anemia group D2 protein
Location	Cucurbita_argyrosperma_scaffold_083 : 308266 .. 308595 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAACTCGATTGTTTTGGTTCAGTGTTGGATTTGCGGCCACGTCCGCTTCGATTTCGCAATTCGTCTGGAGAGATCTACTGGCTCATCGATGTGCTCTTTCATCTGATGCAAGTTTTGTTTTGATCCTGAAATTTTCGTGTTCTTTCACCTTCCCAGGAGGTTTTCAGATTGTGGTTTTTGATGTTGTTGGTTGTTTTTTCCTCTCATTGATACAGATTGAGCGGAATTTCGATGCACTGGAAGCTAGAATCTCGAATCTTGAGTCGGTTCGAAACCGGGATTCGATTCCATCTGCTGAGGTATTTCTCTTTCTGTGCTACTGA

mRNA sequence

ATGTTGAGAACTCGATTGTTTTGGTTCAGTGTTGGATTTGCGGCCACGTCCGCTTCGATTTCGCAATTCGTCTGGAGAGATCTACTGGCTCATCGATGTGCTCTTTCATCTGATGCAAGTTTTGTTTTGATCCTGAAATTTTCGTGTTCTTTCACCTTCCCAGGAGGTTTTCAGATTGTGGTTTTTGATGTTGTTGGTTGTTTTTTCCTCTCATTGATACAGATTGAGCGGAATTTCGATGCACTGGAAGCTAGAATCTCGAATCTTGAGTCGGTTCGAAACCGGGATTCGATTCCATCTGCTGAGGTATTTCTCTTTCTGTGCTACTGA

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTTTGGTTCAGTGTTGGATTTGCGGCCACGTCCGCTTCGATTTCGCAATTCGTCTGGAGAGATCTACTGGCTCATCGATGTGCTCTTTCATCTGATGCAAGTTTTGTTTTGATCCTGAAATTTTCGTGTTCTTTCACCTTCCCAGGAGGTTTTCAGATTGTGGTTTTTGATGTTGTTGGTTGTTTTTTCCTCTCATTGATACAGATTGAGCGGAATTTCGATGCACTGGAAGCTAGAATCTCGAATCTTGAGTCGGTTCGAAACCGGGATTCGATTCCATCTGCTGAGGTATTTCTCTTTCTGTGCTACTGA

Protein sequence

MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIVVFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAEVFLFLCY

Homology

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BLAST of Carg11504 vs. NCBI nr
Match: XP_022953274.1 (uncharacterized protein LOC111455871 isoform X2 [Cucurbita moschata] >XP_023548727.1 uncharacterized protein LOC111807295 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 66/102 (64.71%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD                      
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         IERNFDALEARISNLESVRNRDSIPSAE
Sbjct: 61  --------------IERNFDALEARISNLESVRNRDSIPSAE 66

[Close]

BLAST of Carg11504 vs. NCBI nr
Match: XP_022953273.1 (uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 66/102 (64.71%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD                      
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         IERNFDALEARISNLESVRNRDSIPSAE
Sbjct: 61  --------------IERNFDALEARISNLESVRNRDSIPSAE 66

[Close]

BLAST of Carg11504 vs. NCBI nr
Match: XP_022992002.1 (uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 66/102 (64.71%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD                      
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         IERNFDALEARISNLESVRNRDSIPSAE
Sbjct: 61  --------------IERNFDALEARISNLESVRNRDSIPSAE 66

[Close]

BLAST of Carg11504 vs. NCBI nr
Match: XP_022992003.1 (uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 66/102 (64.71%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD                      
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         IERNFDALEARISNLESVRNRDSIPSAE
Sbjct: 61  --------------IERNFDALEARISNLESVRNRDSIPSAE 66

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BLAST of Carg11504 vs. NCBI nr
Match: KGN44712.1 (hypothetical protein Csa_7G374540 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFS+GFA T+ASIS FVWRDLLA+RCALSSDASF                   
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASF------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         +ER+FDALEARISNLES RNR+S+ SAE
Sbjct: 61  --------------MERSFDALEARISNLESARNRNSVSSAE 69

[Close]

BLAST of Carg11504 vs. TAIR10
Match: AT3G07568.1 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-08
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD 39
          MLRTRL WF++GF+ T  SI+  VWRDL A R A+SSD
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSD 38

[Close]

BLAST of Carg11504 vs. TrEMBL
Match: tr|A0A0A0K8L3|A0A0A0K8L3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.3e-19
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFS+GFA T+ASIS FVWRDLLA+RCALSSDASF                   
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASF------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         +ER+FDALEARISNLES RNR+S+ SAE
Sbjct: 61  --------------MERSFDALEARISNLESARNRNSVSSAE 69

[Close]

BLAST of Carg11504 vs. TrEMBL
Match: tr|A0A1S3BHI8|A0A1S3BHI8_CUCME (uncharacterized protein LOC103489712 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.2e-18
Identity = 58/102 (56.86%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFS+GFA T+ASISQFVWRDLLAHR AL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         +ERNFDALEARISNLESVRNR+SI SAE
Sbjct: 61  --------------MERNFDALEARISNLESVRNRNSISSAE 66

[Close]

BLAST of Carg11504 vs. TrEMBL
Match: tr|A0A1S3BGW3|A0A1S3BGW3_CUCME (uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.2e-18
Identity = 59/106 (55.66%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFS+GFA T+ASISQFVWRDLLAHR AL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAEVFLF 107
                         +ERNFDALEARISNLESVRNR+SI SAE   F
Sbjct: 61  --------------MERNFDALEARISNLESVRNRNSISSAEEIPF 70

[Close]

BLAST of Carg11504 vs. TrEMBL
Match: tr|A0A1S3BGX2|A0A1S3BGX2_CUCME (uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.2e-18
Identity = 58/102 (56.86%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRLFWFS+GFA T+ASISQFVWRDLLAHR AL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAE 103
                         +ERNFDALEARISNLESVRNR+SI SAE
Sbjct: 61  --------------MERNFDALEARISNLESVRNRNSISSAE 66

[Close]

BLAST of Carg11504 vs. TrEMBL
Match: tr|A0A2P2ITL8|A0A2P2ITL8_RHIMU (Uncharacterized protein LOC105643658 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60
           MLRTRL WF+VGF  T+A+I+QF WRDL A R +LSSDA                     
Sbjct: 1   MLRTRLLWFTVGFTVTAAAIAQFAWRDLWAERLSLSSDA--------------------- 60

Query: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPS 101
                          ++ FDALEAR++NLES+ +++  P+
Sbjct: 61  ---------------KQKFDALEARVANLESIPSQNPNPA 64

The following BLAST results are available for this feature:

BLAST of Carg11504 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953274.1	3.2e-22	64.71	uncharacterized protein LOC111455871 isoform X2 [Cucurbita moschata] >XP_0235487...	[more]
XP_022953273.1	3.2e-22	64.71	uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata]	[more]
XP_022992002.1	3.2e-22	64.71	uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima]	[more]
XP_022992003.1	3.2e-22	64.71	uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima]	[more]
KGN44712.1	1.3e-18	56.86	hypothetical protein Csa_7G374540 [Cucumis sativus]	[more]

BLAST of Carg11504 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07568.1	9.3e-08	63.16	unknown protein	[more]

BLAST of Carg11504 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11504 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8L3\|A0A0A0K8L3_CUCSA	8.3e-19	56.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1	[more]
tr\|A0A1S3BHI8\|A0A1S3BHI8_CUCME	9.2e-18	56.86	uncharacterized protein LOC103489712 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BGW3\|A0A1S3BGW3_CUCME	9.2e-18	55.66	uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BGX2\|A0A1S3BGX2_CUCME	9.2e-18	56.86	uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P2ITL8\|A0A2P2ITL8_RHIMU	2.3e-08	39.00	Uncharacterized protein LOC105643658 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11504-RA	Carg11504-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11504	Csa7G374540	Cucumber (Chinese Long) v2	carcuB0013
Carg11504	MELO3C012717	Melon (DHL92) v3.5.1	carmeB0014
Carg11504	CSPI07G15330	Wild cucumber (PI 183967)	carcpiB0013
Carg11504	Cucsa.388250	Cucumber (Gy14) v1	carcgyB0013
Carg11504	MELO3C012717.2	Melon (DHL92) v3.6.1	carmedB0015
Carg11504	CsaV3_7G027090	Cucumber (Chinese Long) v3	carcucB0013
Carg11504	Cla97C09G170610	Watermelon (97103) v2	carwmbB0012
Carg11504	Bhi09G000997	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11504	Silver-seed gourd	carcarB009
Carg11504	Cucumber (Gy14) v2	carcgybB0012
Carg11504	Cucurbita maxima (Rimu)	carcmaB0020
Carg11504	Cucurbita maxima (Rimu)	carcmaB0021
Carg11504	Cucurbita moschata (Rifu)	carcmoB0021
Carg11504	Cucurbita moschata (Rifu)	carcmoB0022
Carg11504	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11504	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11504	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11504	Watermelon (Charleston Gray)	carwcgB0012
Carg11504	Watermelon (97103) v1	carwmB0014