Cucsa.384810 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.384810
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03904 : 246102 .. 246661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACGGTATTGATTTTTTTTtAAAGAACAGAAAGACTATTATATTAAACATTCCTTCTTATCAAGCTCCACAAATTGGAAGAGCCAATTAGGAAAGTCCAAAAACCAATTACAAGAAGAATGAGAAGAAATAGCAAAATGAGCCAACTGGTGAGCTAAACAATTGCAACACTTGGAGGCATAACGAAAACTCTTACATTTAAAACAGAGATTAAGGTAGGAGTCTACAAATAAATGATGCCGAAGAGGGATAAAGTGAAATTCAAAGATTGTTTCTTCTTCGCAACACCTCTGCACCACACTCAACCTCTAGATTTGCATTACCCATTTCGATGGCCAGCTTCAGATCATGAAGAACACCCAAAATGTTCAGCAACTTCAGGAAGGAACACAACCATCACAGCAACCACAGACCTCAACCATCTCGAACAACGATATCCAAGTCCGTTTCTAATTTATCCAGATGTCAAGCGCACATCAAAATTAAACTTTAGGCATCCCCTCGCTGAAAGAGACCACGAAAGAGGGGGAGCTGATGCGCATCGCGAACGACCAGGTTAG

mRNA sequence

TCACGGTATTGATTTTTTTTTAAAGAACAGAAAGACTATTATATTAAACATTCCTTCTTATCAAGCTCCACAAATTGGAAGAGCCAATTAGGAAAGTCCAAAAACCAATTACAAGAAGAATGAGAAGAAATAGCAAAATGAGCCAACTGGTGAGCTAAACAATTGCAACACTTGGAGGCATAACGAAAACTCTTACATTTAAAACAGAGATTAAGGTAGGAGTCTACAAATAAATGATGCCGAAGAGGGATAAAGTGAAATTCAAAGATTGTTTCTTCTTCGCAACACCTCTGCACCACACTCAACCTCTAGATTTGCATTACCCATTTCGATGGCCAGCTTCAGATCATGAAGAACACCCAAAATGTTCAGCAACTTCAGGAAGGAACACAACCATCACAGCAACCACAGACCTCAACCATCTCGAACAACGATATCCAAGTCCGTTTCTAATTTATCCAGATGTCAAGCGCACATCAAAATTAAACTTTAGGCATCCCCTCGCTGAAAGAGACCACGAAAGAGGGGGAGCTGATGCGCATCGCGAACGACCAGGTTAG

Coding sequence (CDS)

ATGATGCCGAAGAGGGATAAAGTGAAATTCAAAGATTGTTTCTTCTTCGCAACACCTCTGCACCACACTCAACCTCTAGATTTGCATTACCCATTTCGATGGCCAGCTTCAGATCATGAAGAACACCCAAAATGTTCAGCAACTTCAGGAAGGAACACAACCATCACAGCAACCACAGACCTCAACCATCTCGAACAACGATATCCAAGTCCGTTTCTAATTTATCCAGATGTCAAGCGCACATCAAAATTAAACTTTAGGCATCCCCTCGCTGAAAGAGACCACGAAAGAGGGGGAGCTGATGCGCATCGCGAACGACCAGGTTAG

Protein sequence

MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTDLNHLEQRYPSPFLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG*
Homology
[Close]
BLAST of Cucsa.384810 vs. TrEMBL
Match: A0A0A0KBX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157380 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD 60
           MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD
Sbjct: 1   MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD 60

Query: 61  LNHLEQRYPSPFLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG 109
           LNHLEQRYPS FLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG
Sbjct: 61  LNHLEQRYPSRFLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG 108

[Close]
BLAST of Cucsa.384810 vs. NCBI nr
Match: gi|700191784|gb|KGN46988.1| (hypothetical protein Csa_6G157380 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 6.4e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD 60
           MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD
Sbjct: 1   MMPKRDKVKFKDCFFFATPLHHTQPLDLHYPFRWPASDHEEHPKCSATSGRNTTITATTD 60

Query: 61  LNHLEQRYPSPFLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG 109
           LNHLEQRYPS FLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG
Sbjct: 61  LNHLEQRYPSRFLIYPDVKRTSKLNFRHPLAERDHERGGADAHRERPG 108

The following BLAST results are available for this feature:
BLAST of Cucsa.384810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX2_CUCSA4.5e-5999.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157380 PE=4 SV=1[more]
BLAST of Cucsa.384810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191784|gb|KGN46988.1|6.4e-5999.07hypothetical protein Csa_6G157380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.384810.1Cucsa.384810.1mRNA