Cucsa.375400 (gene) Cucumber (Gy14) v1

NameCucsa.375400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03746 : 421810 .. 423234 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACATTAATGTTCTGATCTTAGTGGCAGGGTTCTCCTCAGGCATGTCATACTTGACAAACAGAACTTTTTTTTAGTTGTCAAATATTCGAACATCCAGAGACCACCTTAAAGAAATTGTATTTCTGGAAAGGAAGATCTTGGATTTTCTCAGCTTAGTCAGGAAGGCTGAGAGAAGTATTTTGTTTCATTGAGAAACTAAAGTAGATACTTTGAAATAGATCCACACAAAAGAATGTCTTTCACCTCAGAGAGAAGAGGGCTAAATACATGGCTTTTCATTTCTTTCCCTTTTTTCTTTTGACGGAGTAAAATTTCTTTTAAGGAACTCTATTTCTAATTTTCTTGGTATTTTTTTCTATGGCTAATACTATGTTTACCTCAGAATTTTTCATATTTACTTTGATAGTTCATGATTTTCTTGTTCTTCATGATTTTCATATTTGATAGGAGCCTACTGTCAGACCCCCAATTCGATTGTCCCCCTTGACACCTGCAAATATGGAGATCTGTGCTCCAAGGTACTCATTCTTTTCTATATTAAAAATTACTTCTTAATATCTTGTTGACTTGAGCTTCAGTTCTAGATTGCTAGATTGCTGGCTCTAATTTATGTTCCCCTTCCTGAAAAGGTTTGACGATTAACTCTACATCTGGAACTTATTGAAGCAATGTATCAAGAAGAAAGCCTGTTCTGTATTTTATTTTTCTGTTCTTGTAAAATGTTGTTTCAATTGAAATGGATTTAGGTTATTGTCTTTAATGTAGATGTGATTAATGCTGATTTCTGTTAGGTCTATAATCATGAACAATTGGACATTATCTGGTAGCTCCAAATCATTATTTTCACTACGTTGGAGAATTTTGAGAACCTGATGCCGTTATTACTTATTTTATAATCTTGGTTAGGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGTTCATAATATAATGTGTTCGTGATATAGAATGAAGGATACTGCCTTTATTATCTGCTGTGGTCACTGAGAATGAAATTGATCGCCACCTGTTTCTTATTGTTGCTCGTTTAAAATCTTTCATGGAAAGTTTAGTTTTAGCTTTCTTTTTCAAAACTTACAGTGTTCTCTTTTTCATTATTTGTTTTAGCCTAAGTTAA

mRNA sequence

GGACATTAATGTTCTGATCTTAGTGGCAGGGTTCTCCTCAGGCATGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGATACTGCCTTTATTATCTGCTGTGGTCACTGAGAATGAAATTGATCGCCACCTGTTTCTTATTGTTGCTCGTTTAAAATCTTTCATGGAAAGTTTAGTTTTAGCTTTCTTTTTCAAAACTTACAGTGTTCTCTTTTTCATTATTTGTTTTAGCCTAAGTTAA

Coding sequence (CDS)

GGACATTAATGTTCTGATCTTAGTGGCAGGGTTCTCCTCAGGCATGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGATACTGCCTTTATTATCTGCTGTGGTCACTGAGAATGAAATTGATCGCCACCTGTTTCTTATTGTTGCTCGTTTAAAATCTTTCATGGAAAGTTTAGTTTTAGCTTTCTTTTTCAAAACTTACAGTGTTCTCTTTTTCATTATTTGTTTTAGCCTAAGTTAA

Protein sequence

DINVLILVAGFSSGMTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKILPLLSAVVTENEIDRHLFLIVARLKSFMESLVLAFFFKTYSVLFFIICFSLS*
BLAST of Cucsa.375400 vs. TrEMBL
Match: A0A0A0L7M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316260 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1

Query: 16  TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 75
           TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK
Sbjct: 144 TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 203

Query: 76  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKIL 124
           RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIK +
Sbjct: 204 RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKFI 251

BLAST of Cucsa.375400 vs. TrEMBL
Match: F6HSK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01240 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.8e-08
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 1

Query: 2   INVLILVAGFSSGMTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHE 61
           +N LIL +     + C +NQV   S  +T L  E +    CN+  W+ R GS K   + +
Sbjct: 1   MNSLILQSSLQPALGCPENQVSWFSWKSTNLDWEDVRGLRCNVTRWNLRVGSQKCAITCQ 60

Query: 62  PSVITHPQTYQILKRYSLPVT--SEESSTQSEDLSTDEEEIV--SAEELLAQPLSSEQVN 121
             V       ++ + YS+P+    E SS  S+D S+D E     S EELL QPL S+++ 
Sbjct: 61  AFVGKQSMHQKLWRTYSMPINLDKESSSPFSQDYSSDNENASEDSPEELLDQPLGSDELK 120

Query: 122 ---VD---IKILPLLSAVVTENEI-DRHLFLIVARLKSFMESLVL 156
              VD    K++  LS    +N I  R L++    L +F   L +
Sbjct: 121 TLLVDSERTKLIKKLSEANQQNRILKRQLYIKEDALVNFKSELAV 165

BLAST of Cucsa.375400 vs. NCBI nr
Match: gi|700202680|gb|KGN57813.1| (hypothetical protein Csa_3G316260 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 4.2e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1

Query: 16  TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 75
           TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK
Sbjct: 144 TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 203

Query: 76  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKIL 124
           RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIK +
Sbjct: 204 RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKFI 251

BLAST of Cucsa.375400 vs. NCBI nr
Match: gi|449456196|ref|XP_004145836.1| (PREDICTED: uncharacterized protein LOC101218713 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.9e-49
Identity = 105/122 (86.07%), Postives = 110/122 (90.16%), Query Frame = 1

Query: 16  TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 75
           TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK
Sbjct: 8   TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 67

Query: 76  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKILPLLSAVVTENEI 135
           RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQ+N          A++ ++E 
Sbjct: 68  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQLN----------ALLADSER 119

Query: 136 DR 138
           DR
Sbjct: 128 DR 119

BLAST of Cucsa.375400 vs. NCBI nr
Match: gi|659114426|ref|XP_008457048.1| (PREDICTED: uncharacterized protein LOC103496819 isoform X1 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 93/122 (76.23%), Postives = 100/122 (81.97%), Query Frame = 1

Query: 16  TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 75
           TCLDN VLLSSK A KLKRE LNNPSCN+ATWSFRTGSCKLIHSHEPSV   PQ+YQILK
Sbjct: 8   TCLDNLVLLSSKKARKLKRENLNNPSCNMATWSFRTGSCKLIHSHEPSVTIRPQSYQILK 67

Query: 76  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKILPLLSAVVTENEI 135
           RYSLPVTSEESS QSEDLST EEEIVS EELLAQPLSSEQ+N          A++ ++E 
Sbjct: 68  RYSLPVTSEESSMQSEDLSTHEEEIVSGEELLAQPLSSEQLN----------ALLADSER 119

Query: 136 DR 138
           DR
Sbjct: 128 DR 119

BLAST of Cucsa.375400 vs. NCBI nr
Match: gi|659114428|ref|XP_008457049.1| (PREDICTED: uncharacterized protein LOC103496819 isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 68/122 (55.74%), Postives = 74/122 (60.66%), Query Frame = 1

Query: 16  TCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILK 75
           TCLDN VLLSSK A KLKRE LNNPSCN+ATWSFRT                        
Sbjct: 8   TCLDNLVLLSSKKARKLKRENLNNPSCNMATWSFRT------------------------ 67

Query: 76  RYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKILPLLSAVVTENEI 135
                VTSEESS QSEDLST EEEIVS EELLAQPLSSEQ+N          A++ ++E 
Sbjct: 68  -----VTSEESSMQSEDLSTHEEEIVSGEELLAQPLSSEQLN----------ALLADSER 90

Query: 136 DR 138
           DR
Sbjct: 128 DR 90

BLAST of Cucsa.375400 vs. NCBI nr
Match: gi|296087147|emb|CBI33521.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 51/157 (32.48%), Postives = 75/157 (47.77%), Query Frame = 1

Query: 10  GFSSGMTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQ 69
           G S G  C +NQV   S  +T L  E +    CN+  W+ R GS K   + +  V     
Sbjct: 62  GISRG--CPENQVSWFSWKSTNLDWEDVRGLRCNVTRWNLRVGSQKCAITCQAFVGKQSM 121

Query: 70  TYQILKRYSLPVT--SEESSTQSEDLSTDEEEIV--SAEELLAQPLSSEQVN---VD--- 129
             ++ + YS+P+    E SS  S+D S+D E     S EELL QPL S+++    VD   
Sbjct: 122 HQKLWRTYSMPINLDKESSSPFSQDYSSDNENASEDSPEELLDQPLGSDELKTLLVDSER 181

Query: 130 IKILPLLSAVVTENEI-DRHLFLIVARLKSFMESLVL 156
            K++  LS    +N I  R L++    L +F   L +
Sbjct: 182 TKLIKKLSEANQQNRILKRQLYIKEDALVNFKSELAV 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L7M7_CUCSA2.9e-5298.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316260 PE=4 SV=1[more]
F6HSK3_VITVI9.8e-0831.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01240 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|700202680|gb|KGN57813.1|4.2e-5298.15hypothetical protein Csa_3G316260 [Cucumis sativus][more]
gi|449456196|ref|XP_004145836.1|1.9e-4986.07PREDICTED: uncharacterized protein LOC101218713 [Cucumis sativus][more]
gi|659114426|ref|XP_008457048.1|1.1e-4176.23PREDICTED: uncharacterized protein LOC103496819 isoform X1 [Cucumis melo][more]
gi|659114428|ref|XP_008457049.1|2.2e-2155.74PREDICTED: uncharacterized protein LOC103496819 isoform X2 [Cucumis melo][more]
gi|296087147|emb|CBI33521.3|4.5e-0632.48unnamed protein product [Vitis vinifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.375400.1Cucsa.375400.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.375400Csa3G316260Cucumber (Chinese Long) v2cgycuB525
The following gene(s) are paralogous to this gene:

None