Csa3G316260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G316260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 17561786 .. 17564622 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTTGCCACAAACAGCCTAACGCTTAAACAATTAGTTTTTAGGAAGGATTTGAGCTTACCTTTAGTAAGGTTGTCATGCTTTATTTACAATGGAGTTCACAGTCTTTCTTATCTCTTTCGTATTTGGAATCTACCTCATTTTCCTATTCGGAAACTAGGCGCTTAGGCCTAAATTTGGGCCACTACGGATGTTCCAAATTAGAAGGTTGGTCCGAATCGACCACTCGTATGGAGTTACTGAGGTCACCCTCAACTCGACTTCGGCCGATGAGGATGAGGCAAGTCGATAGGCCACAAATGTTCAATTAGCCTCGACCTCAAACTTCAGGGTTGAGGCGATCTAATTGGATTTTGGACTAATTTCATTTTGACTCTATTTGTTAGGAACTCTCACAGTCTACTTCATGTCACTTTTGGGTTTGTTCGATAGAATTAGGTAACACTTCTTGTTTTTTTTATATTTATCTTGTTGTTGGTCTAGAATTACCTACCACACCTTCAATTAATACACTTTTCATCTAAACTTACATATATTATCTTCAATTTTGTTTAAGTTTTAAAGTAAAATTATAACCAAACAAATAATTTCTTTTGTTGAAAAATTGTCAAAAATAACAAATTTGACAGAATATTTATAACATATAATAAAAATTTTAGATTCTATCGATAATAGACATTGAAACGTTGATAGAATCCAAAATTTTGTTATAACTTATAAATATTTTAGTCTATTTGTCTATTTTTAAAAATGCCTCTTTTTTATTCTCTCATGATACAAATGACTAATGTTTATTTTACAACCAGAATCGAACTGAACCGAACCAAAGCAGAGAAGCCATTGCCACCGGACTTGGTTCGGTTGGGTGTTTCGCCCATGCATCACGAGATCTCCACGTGTTGAGTTTTTGGCGGTCGAAATTCATTTCAGCTTGGTCGTGAAAGTTTCATCTCCGCTCTCCAGCTTCACGGAAGCCATTGCCACTGGAGTTTCAAAAGTTTCAATCGGTAACCAAATTTCGGCAGTACACTCGTTTAATTGCAAGCGTTGAGTAAGTTTGATCATTCAATGTTCTCTTCCTGTTTAATTGCCACTCATTTCCTTCTGTAACAGTAAACTTCCTTGGTCAATCTTAATTTTGCAACAAGCGATAGCGAAATTAACGAGAAGATGAAAACAGAAAGGGAGAATTGTACTTAGATGCCTTAGAAATGGGTTTTCTTGAAAAGTTCTTCATTCCAATATGGAAGGGACAATCGTTATTTTAGAGTATGGGAGTTAGTGAAAATGCTGGAGCTATTTTAAAATTTTGACGAGGATTATTCTGAATATCTTGAATAGATGGATGTTGATACGTTTTTATTTTTGTTTATTTTAAAGAAATTGTGAACCCTTCCCTGTTAGTGGGATTGAGATTAATTGTTGTTTACTATAGTGACTGACAGTTAGCTTAGTTAGTTTAATTATGCAGTAGTGGTTTAACTAAGTATATTGAACTGGATTGGATTTGTTGTAATGAGCAAAGATTTGGTTGAGATCAATAATGAAAAAGAACTCTAAGCTTCTTCTCTCGTTTTTTATGACAACTTTTTTAGGGACATTAATGTTCTGATCTTAGTGGCAGGGTTCTCCTCAGGCATGTCATACTTGACAAACAGAACTTTTTTTTAGTTGTCAAATATTCGAACATCCAGAGACCACCTTAAAGAAATTGTATTTCTGGAAAGGAAGATCTTGGATTTTCTCAGCTTAGTCAGGAAGGCTGAGAGAAGTATTTTGTTTCATTGAGAAACTAAAGTAGATACTTTGAAATAGATCCACACAAAAGAATGTCTTTCACCTCAGAGAGAAGAGGGCTAAATACATGGCTTTTCATTTCTTTCCCTTTTTTCTTTTGACGGAGTAAAATTTCTTTTAAGGAACTCTATTTCTAATTTTCTTGGTATTTTTTTCTATGGCTAATACTATGTTTACCTCAGAATTTTTCATATTTACTTTGATAGTTCATGATTTTCTTGTTCTTCATGATTTTCATATTTGATAGGAGCCTACTGTCAGACCCCCAATTCGATTGTCCCCCTTGACACCTGCAAATATGGAGATCTGTGCTCCAAGGTACTCATTCTTTTCTATATTAAAAATTACTTCTTAATATCTTGTTGACTTGAGCTTCAGTTCTAGATTGCTAGATTGCTGGCTCTAATTTATGTTCCCCTTCCTGAAAAGGTTTGACGATTAACTCTACATCTGGAACTTATTGAAGCAATGTATCAAGAAGAAAGCCTGTTCTGTATTTTATTTTTCTGTTCTTGTAAAATGTTGTTTCAATTGAAATGGATTTAGGTTATTGTCTTTAATGTAGATGTGATTAATGCTGATTTCTGTTAGGTCTATAATCATGAACAATTGGACATTATCTGGTAGCTCCAAATCATTATTTTCACTACGTTGGAGAATTTTGAGAACCTGATGCCGTTATTACTTATTTTATAATCTTGGTTAGGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGTTCATAATATAA

mRNA sequence

ATGGTGCTTGCCACAAACAGCCTAACGCTTAAACAATTAGTTTTTAGGAAGGATTTGAGCTTACCTTTAGCGCTTAGGCCTAAATTTGGGCCACTACGGATGTTCCAAATTAGAAGGTTGGTCCGAATCGACCACTCGTATGGAGTTACTGAGGTCACCCTCAACTCGACTTCGGCCGATGAGGATGAGGCAAGAACTCTCACAGTCTACTTCATGTCACTTTTGGGTTTGTTCGATAGAATTAGAATCGAACTGAACCGAACCAAAGCAGAGAAGCCATTGCCACCGGACTTGTTTCATCTCCGCTCTCCAGCTTCACGGAAGCCATTGCCACTGGAGTTTCAAAAGTTTCAATCGGAGCCTACTGTCAGACCCCCAATTCGATTGTCCCCCTTGACACCTGCAAATATGGAGATCTGTGCTCCAAGGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGTTCATAATATAA

Coding sequence (CDS)

ATGGTGCTTGCCACAAACAGCCTAACGCTTAAACAATTAGTTTTTAGGAAGGATTTGAGCTTACCTTTAGCGCTTAGGCCTAAATTTGGGCCACTACGGATGTTCCAAATTAGAAGGTTGGTCCGAATCGACCACTCGTATGGAGTTACTGAGGTCACCCTCAACTCGACTTCGGCCGATGAGGATGAGGCAAGAACTCTCACAGTCTACTTCATGTCACTTTTGGGTTTGTTCGATAGAATTAGAATCGAACTGAACCGAACCAAAGCAGAGAAGCCATTGCCACCGGACTTGTTTCATCTCCGCTCTCCAGCTTCACGGAAGCCATTGCCACTGGAGTTTCAAAAGTTTCAATCGGAGCCTACTGTCAGACCCCCAATTCGATTGTCCCCCTTGACACCTGCAAATATGGAGATCTGTGCTCCAAGGACTTGTCTGGACAACCAAGTTTTACTGAGTTCCAAGAATGCAACAAAGTTAAAGAGGGAAAAGTTGAATAACCCTTCATGCAATATCGCAACCTGGAGCTTTAGGACAGGTTCTTGCAAGTTGATCCATTCTCATGAACCTTCTGTAATAACACATCCTCAGACTTATCAGATTCTCAAAAGATATTCCTTGCCGGTCACATCAGAGGAGTCTTCAACGCAATCAGAAGATCTTTCTACAGATGAAGAGGAAATTGTAAGTGCAGAGGAACTTCTGGCTCAACCCCTTAGCAGTGAACAGGTAAACGTAGACATTAAGTTCATAATATAA

Protein sequence

MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSADEDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSEPTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVNVDIKFII*
Homology
[Close]
BLAST of Csa3G316260 vs. TrEMBL
Match: A0A0A0L7M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316260 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 1.1e-137
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 

Query: 1   MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD 60
           MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD
Sbjct: 1   MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD 60

Query: 61  EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE 120
           EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE
Sbjct: 61  EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE 120

Query: 121 PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG 180
           PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG
Sbjct: 121 PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG 180

Query: 181 SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS 240
           SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS
Sbjct: 181 SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS 240

Query: 241 SEQVNVDIKFII 253
           SEQVNVDIKFII
Sbjct: 241 SEQVNVDIKFII 252

[Close]
BLAST of Csa3G316260 vs. NCBI nr
Match: gi|700202680|gb|KGN57813.1| (hypothetical protein Csa_3G316260 [Cucumis sativus])

HSP 1 Score: 497.3 bits (1279), Expect = 1.6e-137
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 

Query: 1   MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD 60
           MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD
Sbjct: 1   MVLATNSLTLKQLVFRKDLSLPLALRPKFGPLRMFQIRRLVRIDHSYGVTEVTLNSTSAD 60

Query: 61  EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE 120
           EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE
Sbjct: 61  EDEARTLTVYFMSLLGLFDRIRIELNRTKAEKPLPPDLFHLRSPASRKPLPLEFQKFQSE 120

Query: 121 PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG 180
           PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG
Sbjct: 121 PTVRPPIRLSPLTPANMEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTG 180

Query: 181 SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS 240
           SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS
Sbjct: 181 SCKLIHSHEPSVITHPQTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLS 240

Query: 241 SEQVNVDIKFII 253
           SEQVNVDIKFII
Sbjct: 241 SEQVNVDIKFII 252

[Close]
BLAST of Csa3G316260 vs. NCBI nr
Match: gi|449456196|ref|XP_004145836.1| (PREDICTED: uncharacterized protein LOC101218713 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 137 MEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHP 196
           MEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHP
Sbjct: 1   MEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHP 60

Query: 197 QTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVN 246
           QTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQ+N
Sbjct: 61  QTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQLN 109

[Close]
BLAST of Csa3G316260 vs. NCBI nr
Match: gi|659114426|ref|XP_008457048.1| (PREDICTED: uncharacterized protein LOC103496819 isoform X1 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 6.5e-46
Identity = 96/109 (88.07%), Postives = 99/109 (90.83%), Query Frame = 1 

Query: 137 MEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHP 196
           MEICAPRTCLDN VLLSSK A KLKRE LNNPSCN+ATWSFRTGSCKLIHSHEPSV   P
Sbjct: 1   MEICAPRTCLDNLVLLSSKKARKLKRENLNNPSCNMATWSFRTGSCKLIHSHEPSVTIRP 60

Query: 197 QTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVN 246
           Q+YQILKRYSLPVTSEESS QSEDLST EEEIVS EELLAQPLSSEQ+N
Sbjct: 61  QSYQILKRYSLPVTSEESSMQSEDLSTHEEEIVSGEELLAQPLSSEQLN 109

[Close]
BLAST of Csa3G316260 vs. NCBI nr
Match: gi|659114428|ref|XP_008457049.1| (PREDICTED: uncharacterized protein LOC103496819 isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 71/109 (65.14%), Postives = 73/109 (66.97%), Query Frame = 1 

Query: 137 MEICAPRTCLDNQVLLSSKNATKLKREKLNNPSCNIATWSFRTGSCKLIHSHEPSVITHP 196
           MEICAPRTCLDN VLLSSK A KLKRE LNNPSCN+ATWSFRT                 
Sbjct: 1   MEICAPRTCLDNLVLLSSKKARKLKRENLNNPSCNMATWSFRT----------------- 60

Query: 197 QTYQILKRYSLPVTSEESSTQSEDLSTDEEEIVSAEELLAQPLSSEQVN 246
                       VTSEESS QSEDLST EEEIVS EELLAQPLSSEQ+N
Sbjct: 61  ------------VTSEESSMQSEDLSTHEEEIVSGEELLAQPLSSEQLN 80

The following BLAST results are available for this feature:
BLAST of Csa3G316260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7M7_CUCSA1.1e-137100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316260 PE=4 SV=1[more]
BLAST of Csa3G316260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202680|gb|KGN57813.1|1.6e-137100.00hypothetical protein Csa_3G316260 [Cucumis sativus][more]
gi|449456196|ref|XP_004145836.1|1.1e-5399.08PREDICTED: uncharacterized protein LOC101218713 [Cucumis sativus][more]
gi|659114426|ref|XP_008457048.1|6.5e-4688.07PREDICTED: uncharacterized protein LOC103496819 isoform X1 [Cucumis melo][more]
gi|659114428|ref|XP_008457049.1|1.3e-2565.14PREDICTED: uncharacterized protein LOC103496819 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU132011cucumber EST collection version 3.0transcribed_cluster
CU140583cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G316260.1Csa3G316260.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU132011CU132011transcribed_cluster
CU140583CU140583transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G316260Cucsa.375400Cucumber (Gy14) v1cgycuB525
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G316260Cucurbita moschata (Rifu)cmocuB229
Csa3G316260Cucurbita moschata (Rifu)cmocuB442
Csa3G316260Melon (DHL92) v3.5.1cumeB246
Csa3G316260Watermelon (Charleston Gray)cuwcgB233
Csa3G316260Watermelon (97103) v1cuwmB245
Csa3G316260Cucurbita pepo (Zucchini)cpecuB547
Csa3G316260Cucurbita pepo (Zucchini)cpecuB600
Csa3G316260Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G316260Cucumber (Gy14) v2cgybcuB109
Csa3G316260Melon (DHL92) v3.6.1cumedB239
Csa3G316260Silver-seed gourdcarcuB0538
Csa3G316260Silver-seed gourdcarcuB0780
Csa3G316260Watermelon (97103) v2cuwmbB218
Csa3G316260Wax gourdcuwgoB271
Csa3G316260Cucurbita maxima (Rimu)cmacuB242
Csa3G316260Cucurbita maxima (Rimu)cmacuB455