Cucsa.365620 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Voltage-gated hydrogen channel 1
Location	scaffold03611 : 3448302 .. 3448597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGATGCTGGGGTTGGGTCGTTCGTTTTTTAGACGACCAGGTTGCGTCGTGGATGGCGTGGTGGCCATTGTGGCGTTGGTTTTGGAGGTGGTGGCGGAGAGGAAAGGGGGCGGAGTGATAATGGTGGCGAGTTTGTGGAGGCTTGTAAGGGTGGTGGAGAGTGCTTTTGAGATAAGTGATGATACCATTGAAGTGAAGATTGAAGGAATAGTTTGGGAGTTAGAGAAAATGAAAGAAGAAATAAGAAGAGAGAAAGAAAAGGATACGATAGAGATGCTTCAAGGGAAGAGTTGA

mRNA sequence

CTCTGATGCTGGGGTTGGGTCGTTCGTTTTTTAGACGACCAGGTTGCGTCGTGGATGGCGTGGTGGCCATTGTGGCGTTGGTTTTGGAGGTGGTGGCGGAGAGGAAAGGGGGCGGAGTGATAATGGTGGCGAGTTTGTGGAGGCTTGTAAGGGTGGTGGAGAGTGCTTTTGAGATAAGTGATGATACCATTGAAGTGAAGATTGAAGGAATAGTTTGGGAGTTAGAGAAAATGAAAGAAGAAATAAGAAGAGAGAAAGAAAAGGATACGATAGAGATGCTTCAAGGGAAGAGTTGA

Coding sequence (CDS)

CTCTGATGCTGGGGTTGGGTCGTTCGTTTTTTAGACGACCAGGTTGCGTCGTGGATGGCGTGGTGGCCATTGTGGCGTTGGTTTTGGAGGTGGTGGCGGAGAGGAAAGGGGGCGGAGTGATAATGGTGGCGAGTTTGTGGAGGCTTGTAAGGGTGGTGGAGAGTGCTTTTGAGATAAGTGATGATACCATTGAAGTGAAGATTGAAGGAATAGTTTGGGAGTTAGAGAAAATGAAAGAAGAAATAAGAAGAGAGAAAGAAAAGGATACGATAGAGATGCTTCAAGGGAAGAGTTGA

Protein sequence

LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISDDTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS*

Homology

[Close]

BLAST of Cucsa.365620 vs. TrEMBL
Match: A0A0A0KDR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022330 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD
Sbjct: 131 LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 190

Query: 61  DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 98
           DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS
Sbjct: 191 DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 227

[Close]

BLAST of Cucsa.365620 vs. TrEMBL
Match: M1A857_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006568 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++GLG +FFRRPG ++DG+V +VAL LE   E+ GGG+++V SLWR+VRVVESAFE+SD
Sbjct: 85  LVVGLGCAFFRRPGYLLDGIVVMVALFLEAYLEKNGGGLLLVVSLWRVVRVVESAFELSD 144

Query: 61  DTIEVKIEGIVWELEKMKEEIRR------EKEKDTIEMLQ 95
           + IE +IE IV + E++KEE +R      EK+K  IE+LQ
Sbjct: 145 EAIEAQIEEIVCQFEELKEENKRLMDSVVEKDKQ-IEILQ 183

[Close]

BLAST of Cucsa.365620 vs. TrEMBL
Match: B9T8U4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0094090 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L +GLGRSFF+RPG VVDG VA +AL LE   E++GGG+++V SLWR+VRVVESAFE+SD
Sbjct: 134 LAIGLGRSFFKRPGYVVDGAVASMALFLEAFLEKEGGGLLVVVSLWRVVRVVESAFELSD 193

Query: 61  DTIEVKIEGIVWELEKMKEEIRR 84
           + IE +IEGI+ + E ++EE  R
Sbjct: 194 EAIEAQIEGIICQFELLREENAR 216

[Close]

BLAST of Cucsa.365620 vs. TrEMBL
Match: G7KTV7_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g021860 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 52/93 (55.91%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++GLG SFF+ PG VVDG+VAI AL++EV  E++GGG+++V SLWR++RVVES FE+SD
Sbjct: 133 LLVGLGFSFFKHPGYVVDGIVAIGALIMEVFLEKRGGGLLVVVSLWRVIRVVESVFELSD 192

Query: 61  DTIEVKIEGIVWELEKMKEE------IRREKEK 88
           + IE +IEGIV + E +K+E      I  EK+K
Sbjct: 193 EAIEAQIEGIVCQFEALKDENIRLLGIINEKDK 225

[Close]

BLAST of Cucsa.365620 vs. TrEMBL
Match: A2Q5B7_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC160516g43v2 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 52/93 (55.91%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++GLG SFF+ PG VVDG+VAI AL++EV  E++GGG+++V SLWR++RVVES FE+SD
Sbjct: 58  LLVGLGFSFFKHPGYVVDGIVAIGALIMEVFLEKRGGGLLVVVSLWRVIRVVESVFELSD 117

Query: 61  DTIEVKIEGIVWELEKMKEE------IRREKEK 88
           + IE +IEGIV + E +K+E      I  EK+K
Sbjct: 118 EAIEAQIEGIVCQFEALKDENIRLLGIINEKDK 150

[Close]

BLAST of Cucsa.365620 vs. TAIR10
Match: AT1G10800.1 (AT1G10800.1 unknown protein)

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-23
Identity = 48/99 (48.48%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++ +G+SFF++PGCV+DG +AIVAL+L+V+ E+KG G I+V SLWR++RVVE+AFE+SD
Sbjct: 3   LVVAMGKSFFKQPGCVMDGTLAIVALILQVLLEKKGTGFIVVVSLWRVLRVVETAFELSD 62

Query: 61  DTIEVKIEGIVWELEKMKEEIRR-----EKEKDTIEMLQ 95
           + IEV+I+GI+ + + + +E R       ++ + I+ML+
Sbjct: 63  EAIEVQIDGIISQFQALSKENRTLLETLAEKDEVIKMLE 101

[Close]

BLAST of Cucsa.365620 vs. NCBI nr
Match: gi|778709943|ref|XP_011656484.1| (PREDICTED: voltage-gated hydrogen channel 1 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD
Sbjct: 48  LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 107

Query: 61  DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 98
           DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS
Sbjct: 108 DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 144

[Close]

BLAST of Cucsa.365620 vs. NCBI nr
Match: gi|700190717|gb|KGN45921.1| (hypothetical protein Csa_6G022330 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD
Sbjct: 131 LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 190

Query: 61  DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 98
           DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS
Sbjct: 191 DTIEVKIEGIVWELEKMKEEIRREKEKDTIEMLQGKS 227

[Close]

BLAST of Cucsa.365620 vs. NCBI nr
Match: gi|659128695|ref|XP_008464327.1| (PREDICTED: voltage-gated hydrogen channel 1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 7.3e-38
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           +MLGLG SFFRRPGCVVDGVVAIVAL+LE VAERKGGGVIMVASLWRLVRVVESAFEISD
Sbjct: 131 VMLGLGLSFFRRPGCVVDGVVAIVALILEAVAERKGGGVIMVASLWRLVRVVESAFEISD 190

Query: 61  DTIEVKIEGIVWELEKMKEEIRREKEKDTI-EML 94
           D IEVKIEGIVWELE+MKEEIRREKEKD I EML
Sbjct: 191 DVIEVKIEGIVWELERMKEEIRREKEKDKITEML 224

[Close]

BLAST of Cucsa.365620 vs. NCBI nr
Match: gi|697132066|ref|XP_009620075.1| (PREDICTED: voltage-gated hydrogen channel 1 [Nicotiana tomentosiformis])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++GLGR+FFRRPG ++DG+V +VAL LE   E+KGGG+++V SLWR+VRVVESAFE+SD
Sbjct: 124 LVVGLGRAFFRRPGYLLDGIVVMVALFLESYLEKKGGGLLVVVSLWRVVRVVESAFELSD 183

Query: 61  DTIEVKIEGIVWELEKMKEEIRR------EKEKDTIEMLQ 95
           + IE +IE IV + E++KEE RR      EK K+ IE L+
Sbjct: 184 EAIETQIEEIVCQFEELKEENRRLMENLFEKNKE-IEKLE 222

[Close]

BLAST of Cucsa.365620 vs. NCBI nr
Match: gi|698517607|ref|XP_009803685.1| (PREDICTED: voltage-gated hydrogen channel 1 [Nicotiana sylvestris])

HSP 1 Score: 108.6 bits (270), Expect = 6.2e-21
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 1   LMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRLVRVVESAFEISD 60
           L++GLGRSFFRRPG ++DG+V +VAL LE   E+KGGG+++V SLWR+VRVVESAFE+SD
Sbjct: 124 LVVGLGRSFFRRPGYLLDGIVVMVALFLEAYLEKKGGGLLVVVSLWRIVRVVESAFELSD 183

Query: 61  DTIEVKIEGIVWELEKMKEEIRR------EKEKDTIEMLQ 95
           + IE +IE IV + E +KE+ +R      EK K+ IE L+
Sbjct: 184 EAIEAQIEEIVCQFEGLKEDNKRLMDCVVEKNKE-IEKLK 222

The following BLAST results are available for this feature:

BLAST of Cucsa.365620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDR3_CUCSA	4.3e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022330 PE=4 SV=1	[more]
M1A857_SOLTU	1.3e-20	56.00	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006568 PE=4 SV=1	[more]
B9T8U4_RICCO	1.6e-20	61.45	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0094090 PE=4 SV=1	[more]
G7KTV7_MEDTR	2.8e-20	55.91	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g021860 PE=4 SV=1	[more]
A2Q5B7_MEDTR	2.8e-20	55.91	Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC160516g43v...	[more]

BLAST of Cucsa.365620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10800.1	9.2e-23	48.48	unknown protein	[more]

BLAST of Cucsa.365620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709943\|ref\|XP_011656484.1\|	6.2e-45	100.00	PREDICTED: voltage-gated hydrogen channel 1 [Cucumis sativus]	[more]
gi\|700190717\|gb\|KGN45921.1\|	6.2e-45	100.00	hypothetical protein Csa_6G022330 [Cucumis sativus]	[more]
gi\|659128695\|ref\|XP_008464327.1\|	7.3e-38	91.49	PREDICTED: voltage-gated hydrogen channel 1 [Cucumis melo]	[more]
gi\|697132066\|ref\|XP_009620075.1\|	2.1e-21	58.00	PREDICTED: voltage-gated hydrogen channel 1 [Nicotiana tomentosiformis]	[more]
gi\|698517607\|ref\|XP_009803685.1\|	6.2e-21	57.00	PREDICTED: voltage-gated hydrogen channel 1 [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0010014	meristem initiation
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0010089	xylem development
biological_process	GO:1902600	hydrogen ion transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0030171	voltage-gated proton channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365620.1	Cucsa.365620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 67..87 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.365620	Csa6G022330	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365620	MELO3C026115	Melon (DHL92) v3.5.1	cgymeB590
Cucsa.365620	CSPI06G02860	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365620	CmaCh17G005740	Cucurbita maxima (Rimu)	cgycmaB1002
Cucsa.365620	Cp4.1LG12g04840	Cucurbita pepo (Zucchini)	cgycpeB0950
Cucsa.365620	MELO3C026115.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365620	Bhi04G001667	Wax gourd	cgywgoB737
Cucsa.365620	Carg22627	Silver-seed gourd	carcgyB0264

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.365620	Cucurbita pepo (Zucchini)	cgycpeB0958
Cucsa.365620	Bottle gourd (USVL1VR-Ls)	cgylsiB592
Cucsa.365620	Silver-seed gourd	carcgyB0101
Cucsa.365620	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365620	Watermelon (97103) v2	cgywmbB633
Cucsa.365620	Cucurbita maxima (Rimu)	cgycmaB1010
Cucsa.365620	Cucurbita moschata (Rifu)	cgycmoB1010
Cucsa.365620	Melon (DHL92) v3.5.1	cgymeB592
Cucsa.365620	Watermelon (Charleston Gray)	cgywcgB628
Cucsa.365620	Watermelon (97103) v1	cgywmB657