Cucsa.364800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.364800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	MKI67 FHA domain-interacting nucleolar phosphoprotein-like
Location	scaffold03611 : 2180069 .. 2183383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACTACGTAGCCTCCATTCTCTTGAGCTCTCTCATTCCGCCGCCGCCAACTCCTCTGCTTTCTTCCTTCTTCCTTCTTCTCCTCTTTCAGGTCAGTTCTCTCCAAACCCTAATTCTCAACCTCGATACCCCACCACCTACTTTCAATTTCTGAATTCGTACTAGAAAACCATTACCTTCCCTCTTCGAATTTCCTGAAATATTCCTTTTCCCTAAGTTCTTGATTGTTTGTTTGTTTGTCTGTCTGTTTGTTTTAGTTCAATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGGTATGCTTCAATCTCTTCGACTCTGATTTTTTTTTTTTATTTGTTTTATGGTTATTCTATCCCTTTAACTCTCTTGGGATTTATGTATTTATTCCTCTCTTGCCTCTGATTTTTTTTCTTCAGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTATCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTGATCGAATACCCTAAACCCACATCTTACATTCAATGAAATTTGAAGTTCAAGTTTCTTGTTATCTTCTCTGCTATTTCTTAACCCTTATTGTTTTCTACAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGGTAAGGCTGGCTGAATCTGCGAAGCTTTTTTCTTCCAAAAAGAATTTATGTTCGCAGGAGAATGTTGCATTGCAATAAATTACTAGATTTTTCTGATAACCAAAACTGTCACCAGTAGTGGTACTTTCTTTCTAATTATTTGTGTGCATGGTTTGATTTATGATTTTGTTGTTACGTGTAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTGTTATATTTTAGGACTTTTGTATTTGTAAATTTCTGAATGTTAGTTATTCATCTTAATCACTTTAAGTTTGCCCCAAAATTGAATTTCGTGAGCACAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTGTAAGTAATCATTTGCACTCCCGTGCTACATTTTTGCTTTAACTACCCATGTTGGGAGATGGTTGTTGAATATTTCAAAGAATGTTGCTTCTTTTGTCTCATTTAAATGTTGGCATTTTTGCAGATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGTATTAAGCTTGATCTTTATCTTGTAGACCATACAAACCTATATGTCTACTTACTTTGTTCCATGATAATTTTCAGGAAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAGAATATTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGGGCTGCTGGGATTGATTATGAGTGTCCAGAAATTGTAAGAAGATTTTTATTTTATAGTTTTAAGCAATTCTTTTTCCCGGAAGATTGTTAAATTTTAACTGTTTATTTAAAACATGAGAGCTGTTTATTTACCAGTCATTGATATCTGCTAGTTAGTATTTTTCGTTTATTGAAACTATGGTGTAAAAATGAAGGACAGCACGGACCTAGGAATAATCAAAACAAACCCACAAAAAGAGTTCAATTATAAGGGTTCCAACTAATACAAAATAGATCTCATAGAATTGTTATGAAAGGTCTTTGAAACTGAATCCTTGAGGAAAACATGAAATCCAACAAGAGATCATACTTCTCTAGGTCTCTTTACTACAACACTCTAAACACTTGATTATTCTGCTCACCCCATAGATCACATAATCACACACACAGTCAGCCAAAGAAAAAGACCCTTGTCACGAAAGGGTGAATGGAGGAGAAACTTCATGATCATATCACTAATATTCCTGTGATGAGCAAGTACGAAACCAAACATTTGTACGAAGTCACTCCAAACAGCTCTTGCAAACTAACAACTCTGAGAATATGTGATCAATGACTTCCTTTTGCCTCCTAATTTCTACTTATTATTGGAGTTCTAATATTAATATAGATGGTGAGTTCATTCCTTAGTTTGATTGGTTGATTTCTGTTTTTGGGATCAAACTCAATTTCGATGCCGAATACAACTCTGGTTTTTGATATGATCGTCTAAAAACCAGATATTTTGTTGAGAAAACAAAAGGCCCACAAAAAGGATCCAAACAAAACTGAACTCAACAAAAAGCGTTAAATGCCTCCAACCCAAAAGTATAAGGTTAGGAGGATGATGTGAAAGACCTCAAGTATAGACATCGAAAAAGAGGAGCATTAAATCCATACAGGGAGTATTCCTGAAAGCTCTCAATGGTATCCTAACTACACATTTTCATTATCTCTATATGGCTGGGAACTGTGAGCCACCCCACTTGATGATGAATTCTATGTGAAATATCTTTCCTCTCTTTTTCTTTTTCCTTTTCTTTTTTCTTGTGTTAAATAAAAAACTATTTCTTCGATTGAATGAAATATCTAAAGATGTACCAAATGATGGCCCATTTGAGTATGTGAAATATTATAATGGAAAGTCTTCTATAGGCAATTTCAGGAGGATGAAATTCAGCTAATTCTTTTTTCTTATTGAGTATGCTCTTGAGTTGAAATGCACTGCAAACCTATATTACATCAAGTGCTTGTAAATACCTTTTAAAGAACTCTAACATCATATGATGCTGCCCCCTTTTGAGATCTGCTTGGTGGAAGTCAACTTCTATCTTTTTGAAATTTGATCCCATTATATGAATTGCACTGCAGTTTTCTAATGTCTCTTGATAACTTGCAGGTGGGTGGTGTCCAACCAACTCCCAAGAAGATCAAATTCGATGAAGATTAGAATGAGGGTTCGGTTCATAGAAAGCTATTATATTATCACACCAGAGGAAGGAGGAAGCTCTTGCCTCGTTCCAGTTTCTTATGCTGGAGGGGGGGTAACCTTCCCAATGATCTTGAATCTCCTAATTTTGATCTGTGAAATTTTGTGTCAAAACATACTTTTATTAAGCTCTTTAGTAATATGTATTCCCCTTTATAAAAATGAAAAAAAAGAAGTTATATTGAAGCTTTTATGGCTTACAATTCTGATCTTCTCAAAGACAGGAAAACTGAATGGTAAATTTGAAAGTTCCACCATGTCAGATCTACATGTATAGTTTATAT

mRNA sequence

GTACTACGTAGCCTCCATTCTCTTGAGCTCTCTCATTCCGCCGCCGCCAACTCCTCTGCTTTCTTCCTTCTTCCTTCTTCTCCTCTTTCAGTTCAATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTATCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAGAATATTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGGGCTGCTGGGATTGATTATGAGTGTCCAGAAATTGTGGGTGGTGTCCAACCAACTCCCAAGAAGATCAAATTCGATGAAGATTAGAATGAGGGTTCGGTTCATAGAAAGCTATTATATTATCACACCAGAGGAAGGAGGAAGCTCTTGCCTCGTTCCAGTTTCTTATGCTGGAGGGGGGGTAACCTTCCCAATGATCTTGAATCTCCTAATTTTGATCTGTGAAATTTTGTGTCAAAACATACTTTTATTAAGCTCTTTAGTAATATGTATTCCCCTTTATAAAAATGAAAAAAAAGAAGTTATATTGAAGCTTTTATGGCTTACAATTCTGATCTTCTCAAAGACAGGAAAACTGAATGGTAAATTTGAAAGTTCCACCATGTCAGATCTACATGTATAGTTTATAT

Coding sequence (CDS)

ATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTATCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAG

Protein sequence

MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKDIGGTQEVGG*

Homology

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BLAST of Cucsa.364800 vs. Swiss-Prot
Match: YQL5_SCHPO (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 63/155 (40.65%), Postives = 104/155 (67.10%), Query Frame = 1


Query: 38  RKLSVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYV 97
           +K+S  K L+    VLY+GR+PHGF+EK+M  +F QFG V RLR++RN+KTG SKH+ ++
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHH 157
           EFES +VA +VA++MHNYLLY  +L+  +I  + VH  ++KG +   + +  + + R  H
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYE 193
            K  + E+  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

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BLAST of Cucsa.364800 vs. Swiss-Prot
Match: MK67I_XENLA (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 8.4e-31
Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 1


Query: 19  LSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVK 78
           LS D K   DF        RK   +K    T  V+YIG IP    E +++ +F QFG V 
Sbjct: 12  LSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVT 71

Query: 79  RLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWK 138
           RLR++R+KKTG SK + YVE+E  EVAKIVAD+M+NYL  E +LK   + PE VHP+L+ 
Sbjct: 72  RLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFI 131

Query: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECP 195
           G N R R      + R  +N +R  EE KK+  R++ ++   +KR+   GIDY+ P
Sbjct: 132 GCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEKGIDYDFP 182

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BLAST of Cucsa.364800 vs. Swiss-Prot
Match: MK67I_DANRE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 8.4e-31
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 111
           VLY+G +P G FE +++ +F QFGKV RLR++R+KKTG SK +G+VEFE  EVAKIVA++
Sbjct: 46  VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105

Query: 112 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 171
           M+NYL+ E I+K H+I PE VH KL+ G     +   +  + R  +NK  T ++ KK+  
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 165

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           ++L ++   +KR+ A GIDY+ P
Sbjct: 166 KLLSKESKLRKRLAAKGIDYDFP 186

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BLAST of Cucsa.364800 vs. Swiss-Prot
Match: MK67I_XENTR (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.2e-30
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 111
           V+YIG IP   +E ++  +F QFG V RLR++R+KKTG SK + YVEFE  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 171
           M+NYL  E +LK   + PE VHP+L+ G   + R      + R  +NK R+  E KK+  
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           R+L ++   +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

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BLAST of Cucsa.364800 vs. Swiss-Prot
Match: MK67I_BOVIN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-28
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = 1


Query: 19  LSSDKKESADFLPLEGGPGRKLSVQKPLES-TATVLYIGRIPHGFFEKEMEGFFGQFGKV 78
           LS + +E A F        R+ + Q+  +  T  V+Y+G +P   +E ++  +F QFG V
Sbjct: 12  LSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTV 71

Query: 79  KRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLW 138
            R R++R+KKTG SK +G+VEFES +VAKI A++M+NYL  E +LK H I PE VH +L+
Sbjct: 72  TRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELF 131

Query: 139 KGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 198
           + ++   +  ++  ++R  +N+ R+L +  ++ +R  K+++  +KR+   GIDY  P +V
Sbjct: 132 REWHMPFKRPSYPAVKR--YNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189

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BLAST of Cucsa.364800 vs. TrEMBL
Match: A0A0A0KCE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 8.9e-120
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

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BLAST of Cucsa.364800 vs. TrEMBL
Match: A0A0S3SI61_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G120100 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.2e-88
Identity = 149/211 (70.62%), Postives = 187/211 (88.63%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MG KA+KAMKK +  A+  S    + ADFLPLEGGP R+++ QKPLE+T+TVL++ RIPH
Sbjct: 1   MGTKAKKAMKKNMKMAS--SKQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKS+HFGY+EFESPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +L+VH++ PEHVH +LW+GF+YRH+PL++ ++ERK H+KERTLEEHKKLV+RILK DQ R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G +QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

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BLAST of Cucsa.364800 vs. TrEMBL
Match: A0A0L9UMC8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g132700 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.2e-88
Identity = 149/211 (70.62%), Postives = 187/211 (88.63%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MG KA+KAMKK +  A+  S    + ADFLPLEGGP R+++ QKPLE+T+TVL++ RIPH
Sbjct: 1   MGTKAKKAMKKNMKMAS--SKQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKS+HFGY+EFESPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +L+VH++ PEHVH +LW+GF+YRH+PL++ ++ERK H+KERTLEEHKKLV+RILK DQ R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G +QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

[Close]

BLAST of Cucsa.364800 vs. TrEMBL
Match: A0A0L9VUL8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g158100 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 8.9e-88
Identity = 152/211 (72.04%), Postives = 187/211 (88.63%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MG KA+KAMKK + KA+  S+   E ADFLPLEGGP RKL+ QKP E+T+TVLY+ RIPH
Sbjct: 1   MGTKAKKAMKKNMKKAS--SNKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLRIARNKKTGKS+HFGY+EFESPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +L+VH++ PE+VH +LW+GF+YRH+PL++ ++ERK H+KERTL+EHKKLV+RILK DQ R
Sbjct: 121 LLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDE 212
           +KRI AAGIDYE PEI+G +QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDYESPEIMGNIQPAPKKIKFDD 209

[Close]

BLAST of Cucsa.364800 vs. TrEMBL
Match: A0A059BHS6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02711 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.6e-87
Identity = 153/217 (70.51%), Postives = 187/217 (86.18%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATP-----LSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYI 60
           MG KA+KAMKK L KA+      LS  K E  DFLPLEGGPG KL V+KP ES +TVLYI
Sbjct: 1   MGVKAKKAMKKSLKKASAQPPALLSGSKTEDVDFLPLEGGPGHKLPVEKPSESASTVLYI 60

Query: 61  GRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNY 120
           GRIPHGF+EKE+EG+F QFG +KRLRIARNK+TGKSKHFG+++FESPEVAKIVA++MHNY
Sbjct: 61  GRIPHGFYEKEIEGYFSQFGTIKRLRIARNKRTGKSKHFGFIQFESPEVAKIVAETMHNY 120

Query: 121 LLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILK 180
           LL+EH+L+VHLI PEHVHPK+WKGFNYR++PL+  +++RK+HNKERTLEEHKKLV+ I++
Sbjct: 121 LLFEHLLQVHLIPPEHVHPKIWKGFNYRYKPLDRVQVQRKNHNKERTLEEHKKLVNGIMQ 180

Query: 181 RDQARQKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           RD+ R+K+I AAGIDYECP+IVG  Q  PKKI+FDE+
Sbjct: 181 RDKKRRKKIEAAGIDYECPDIVGDTQAVPKKIRFDEE 217

[Close]

BLAST of Cucsa.364800 vs. TAIR10
Match: AT5G04600.1 (AT5G04600.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 282.7 bits (722), Expect = 1.8e-76
Identity = 134/221 (60.63%), Postives = 173/221 (78.28%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKAT--------PLSSDKKESADFLPLEGGPGRKLSVQKP-LESTAT 60
           MGAKA+KA+KK + K          PL  + K SADFLPLEGGP RK  V  P L++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 120
           VLYIGRIPHGF+E E+E FF QFG VKR+R+ARNKKTGKSKHFG+++FE PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 180
           M++YLL EH+LKVH+I+PE+V P LW+GF    +P++  ++ER+  NKERTLEEH+K++ 
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRDQARQKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           +I+K+DQ R+KRI AAGI+YECPE+VG  QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

[Close]

BLAST of Cucsa.364800 vs. TAIR10
Match: AT3G52660.1 (AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 5.3e-07
Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 1


Query: 22  DKKESADFLPLEGGPGRKLSVQK-PLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRL 81
           +++E  D +  E    +K  V+   L    + +Y+G IP    E +++GF G  G+V  +
Sbjct: 62  EEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEV 121

Query: 82  RIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGF 141
           RI R K +G  K + +V F S ++A    D+++N       +K      +H   +L+ G 
Sbjct: 122 RIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH---RLFLG- 181

Query: 142 NYRHRPLNWSELERK 156
              + P NW E + K
Sbjct: 182 ---NVPRNWMESDIK 189

[Close]

BLAST of Cucsa.364800 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I +++ TG+++ FG+V F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

[Close]

BLAST of Cucsa.364800 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 29/108 (26.85%), Postives = 52/108 (48.15%), Query Frame = 1


Query: 43  QKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFE 102
           ++ +ES + +  L+IG I     E+ ++ +FG++G +    I R++ TG+++ FG++ F 
Sbjct: 5   EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64

Query: 103 SPEVAKIVADSMH-----------------NYLLYEHILKVHLIDPEH 132
            P VA+ V    H                   +L  H   +HLI P H
Sbjct: 65  DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

[Close]

BLAST of Cucsa.364800 vs. TAIR10
Match: AT3G47120.1 (AT3G47120.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 21/72 (29.17%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 53  LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSM 112
           +Y+G IP    E ++   F Q+G++  + + R+K TGKSK F ++ +E      +  D++
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 113 HNYLLYEHILKV 125
           +  L+    +KV
Sbjct: 98  NGALVLGRTIKV 109

[Close]

BLAST of Cucsa.364800 vs. NCBI nr
Match: gi|449446269|ref|XP_004140894.1| (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 212

[Close]

BLAST of Cucsa.364800 vs. NCBI nr
Match: gi|700190818|gb|KGN46022.1| (hypothetical protein Csa_6G044030 [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]

BLAST of Cucsa.364800 vs. NCBI nr
Match: gi|659113449|ref|XP_008456579.1| (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 417.5 bits (1072), Expect = 1.4e-113
Identity = 203/212 (95.75%), Postives = 205/212 (96.70%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL KATPLSSDKKESADFLPLEGGPGRKL VQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of Cucsa.364800 vs. NCBI nr
Match: gi|920700497|gb|KOM43722.1| (hypothetical protein LR48_Vigan05g132700 [Vigna angularis])

HSP 1 Score: 332.0 bits (850), Expect = 7.5e-88
Identity = 149/211 (70.62%), Postives = 187/211 (88.63%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MG KA+KAMKK +  A+  S    + ADFLPLEGGP R+++ QKPLE+T+TVL++ RIPH
Sbjct: 1   MGTKAKKAMKKNMKMAS--SKQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKS+HFGY+EFESPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +L+VH++ PEHVH +LW+GF+YRH+PL++ ++ERK H+KERTLEEHKKLV+RILK DQ R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G +QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

[Close]

BLAST of Cucsa.364800 vs. NCBI nr
Match: gi|920719350|gb|KOM58547.1| (hypothetical protein LR48_Vigan11g158100 [Vigna angularis])

HSP 1 Score: 331.3 bits (848), Expect = 1.3e-87
Identity = 152/211 (72.04%), Postives = 187/211 (88.63%), Query Frame = 1


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60
           MG KA+KAMKK + KA+  S+   E ADFLPLEGGP RKL+ QKP E+T+TVLY+ RIPH
Sbjct: 1   MGTKAKKAMKKNMKKAS--SNKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLRIARNKKTGKS+HFGY+EFESPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +L+VH++ PE+VH +LW+GF+YRH+PL++ ++ERK H+KERTL+EHKKLV+RILK DQ R
Sbjct: 121 LLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDE 212
           +KRI AAGIDYE PEI+G +QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDYESPEIMGNIQPAPKKIKFDD 209

The following BLAST results are available for this feature:

BLAST of Cucsa.364800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YQL5_SCHPO	2.9e-31	40.65	Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra...	[more]
MK67I_XENLA	8.4e-31	43.18	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=...	[more]
MK67I_DANRE	8.4e-31	46.85	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=...	[more]
MK67I_XENTR	4.2e-30	46.15	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis...	[more]
MK67I_BOVIN	2.3e-28	36.67	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2...	[more]

BLAST of Cucsa.364800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCE3_CUCSA	8.9e-120	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044030 PE=4 SV=1	[more]
A0A0S3SI61_PHAAN	5.2e-88	70.62	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G120100 PE=...	[more]
A0A0L9UMC8_PHAAN	5.2e-88	70.62	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g132700 PE=4 SV=1	[more]
A0A0L9VUL8_PHAAN	8.9e-88	72.04	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g158100 PE=4 SV=1	[more]
A0A059BHS6_EUCGR	2.6e-87	70.51	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02711 PE=4 SV=1	[more]

BLAST of Cucsa.364800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04600.1	1.8e-76	60.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.1	5.3e-07	27.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	5.9e-06	34.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	7.6e-06	26.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	1.0e-05	29.17	RNA recognition motif (RRM)-containing protein	[more]

BLAST of Cucsa.364800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446269\|ref\|XP_004140894.1\|	1.3e-119	100.00	PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis sativus]	[more]
gi\|700190818\|gb\|KGN46022.1\|	1.3e-119	100.00	hypothetical protein Csa_6G044030 [Cucumis sativus]	[more]
gi\|659113449\|ref\|XP_008456579.1\|	1.4e-113	95.75	PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo]	[more]
gi\|920700497\|gb\|KOM43722.1\|	7.5e-88	70.62	hypothetical protein LR48_Vigan05g132700 [Vigna angularis]	[more]
gi\|920719350\|gb\|KOM58547.1\|	1.3e-87	72.04	hypothetical protein LR48_Vigan11g158100 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.364800.3	Cucsa.364800.3	mRNA
Cucsa.364800.2	Cucsa.364800.2	mRNA
Cucsa.364800.1	Cucsa.364800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..121 score: 1.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..125 score: 7.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 51..129 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 31..130 score: 2.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 34..140 score: 4.43
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 47..131 score: 2.6
None	No IPR available	PANTHER	PTHR24012:SF243	SUBFAMILY NOT NAMED	coord: 47..131 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.364800	Cla013709	Watermelon (97103) v1	cgywmB658
Cucsa.364800	Csa6G044030	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.364800	MELO3C019883	Melon (DHL92) v3.5.1	cgymeB588
Cucsa.364800	ClCG08G008100	Watermelon (Charleston Gray)	cgywcgB623
Cucsa.364800	CSPI06G03810	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.364800	CmaCh04G025310	Cucurbita maxima (Rimu)	cgycmaB1004
Cucsa.364800	CmoCh04G026510	Cucurbita moschata (Rifu)	cgycmoB1004
Cucsa.364800	Lsi08G006600	Bottle gourd (USVL1VR-Ls)	cgylsiB588
Cucsa.364800	Cp4.1LG01g24840	Cucurbita pepo (Zucchini)	cgycpeB0961
Cucsa.364800	MELO3C019883.2	Melon (DHL92) v3.6.1	cgymedB589
Cucsa.364800	CsaV3_6G004080	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.364800	Cla97C08G150870	Watermelon (97103) v2	cgywmbB629
Cucsa.364800	Carg04605	Silver-seed gourd	carcgyB0771

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.364800	Wax gourd	cgywgoB731