Cp4.1LG01g24840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g24840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMKI67 FHA domain-interacting nucleolar phosphoprotein-like
LocationCp4.1LG01 : 18684321 .. 18687243 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCCTGACCTAAACCCTAATGCCCGTTTATTGTTTCAATCGTAAAGCTCTGAGACATTGTTCACTTTCCGCTTACAATTTGCTGTGTCTGCACCGATAAGTTCGTGGCAATTTAGGGAATTCTAGGGTTTGATTCCCTTTTGCTTGAATTCAATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGGTATGTATGTTCGTCGTACTGTTCATCAACCCCTTCGATTCGGATTTGGTTATTACATCTCTTAATCTCTCTAGTGTTTCATGCACTTATTCCTCTCTCTTGCCTCTGATTTTCTTATTCTCTCTGTTTTTAAGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCGCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTGGCAGCTCACATTTTACATTCAATGAATTAAGTATGAGTCTATTGTTATCTTGTCTGCTACGTACGTCTTAACCCCTATAGTTTTTTGCAGGGTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGGAATAAAAAAGTAAGGCTCTTATCTGCAAAATGTTTTTCCAGAAAGAAAATATATGTTCATGGGAGAGTATTGCGTTACAATAATCACTAGATTCTGTGCTTTGTGGCGGTTTGGATTGAGTTAAACAATAGGATTTTTAGAGATGTGGAGTAGTCTTGATTGAGTTTGAGAGGTAGTTAGGTTTAATGTCTCTTTATAGACATTGATCACTAGGCCTTGTTGTAATTATAGTTTTGGTTTGATTTTGTTTGATTGGAATCCCTTTTTGTAGCTGTTTTGGGATATTTGTTGGGCTTAGTTTTTTTGTTTGCCCTTATACATTCTTTTATCTTTCTCAATGAAAGTTCGACTTATTTGAAAAAAAACACACCAGATTTTACTGTTAATCGTAACTTCTTGACTTAATTTAACGTTCTTTTAAAGTATCTTCATCTTTGTTTTAATCTATTATGATATATACTTTTTCTGTATGCAGACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTGCTATTATCTATTTAGGATGTTTGTGCAGATTGTTTTCTTAGTTTTAGTTTTTCATATTATCCTAAATTTGGATTTTGTGAGCACCACAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTGTAAGTAATCGATTGCATTTCTGCTGCTAGAATTTTCTTCCACCCATGTGTTGACAGACATGATTGTTGAATATTTCAACCGATATTGTTTATTTTTCGCTCAAGTGTTATCATGACATATTTACAGATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCAGAACAAGGTATCAACTATCAAGTTTGGAGAATTATCTTGTAGACCATAAACAAACATATTTTTTTTACATATTTTTGGATAATTTTCAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTAAGCATTTTCTTTTTCCTGAAGATTATTAATATTGGTATCGATATTTAGCCCATTCCTCAGTTTTATTGGCTGATTGCTGCTTTGTGATTGAACAATTCCCATGCCATAAGAAACTTGGGGGCTTTTTCTGTGTTTTTCTTTTTTAAAAAAAAAAAGCTAGAACTTTCGTTGAGAAAAATGAATGAAAAAAGGGGGTTTTCAGTCCAAAAAGGAGCTAAACAAAACTAAACCTGAAAAAGAAAAGATGGCTCCACTCTAAAACAATATAGCTAAGAGGATGATTCAAACGAACTTAGGAGTACACACCCGATATAGACATCGAGTGAACCTAGCAAGTGTTAATGTCTCTCAGGAGCTCACATTGGTATTGTACAGCCTGTGTGAGCCACTTCACTTGTTCATGGTTTCCATACGGCGGTTGGCCACTATGAGCACCTCACTTTTCATGATTTCCATGTGAAAAATGGTCTTATATAGACAATTTAAGGATATGGTATTTAGTTAATCCTCTTTATCAATTCGTATATTTTCTATAGTTGAAGTGATGTTTAGTTTTATCAGAGTGCACTCCTAAACCTGTTTAGCTTCATGTGCTTGTATGCATGCCTTGTTAGAACTTAGCAACATATGATGCCTCCCTCCCCCTTCTCATTAGATCCCGGTTGGTCACACCAAAACATTTCTTCGTTTGAGATTCAATGTCGGTATTTTAACGCCGAAATACTGCAGGAAGGGGCTTCTTCCCTCCACCTCCATTTGTTTTTCTGCTGAATTTGAAATTTTTGCAGGTGGGTAGCGTCCAACCAACTCCCAAGAAGATCAAATTTGATGAAGATTAGAACGAGCGTCGAGTTCATTAAAGCTATAATATTGTCACAATAGAGAGGAAGGATGGAAGAATGATGATGAGAGCCAGCCATTGCATCTTCCCAGTTTCTTATATGCTCTGGGAGGTAACCTTCTTGAATCTCCAAATTTTGATCTTTGAAATTTTGTGTTGAACCCTTTTGTTTCTAAGAAACAGGAACTGAAATAGTATATTGTAGTTATTAATCTCCATTAGTAATAAATAGTTGCTCCAATGTTGTATGCCTATAAATGATCATCTTTAAAGTAGTTTAGCCATTAAGACTTGACTAATTCAAAGTACTTGCCATGCCATTATGAACCCAACGGTTTCAT

mRNA sequence

TTCGCCTGACCTAAACCCTAATGCCCGTTTATTGTTTCAATCGTAAAGCTCTGAGACATTGTTCACTTTCCGCTTACAATTTGCTGTGTCTGCACCGATAAGTTCGTGGCAATTTAGGGAATTCTAGGGTTTGATTCCCTTTTGCTTGAATTCAATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCGCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGGAATAAAAAAACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCAGAACAAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGTAGCGTCCAACCAACTCCCAAGAAGATCAAATTTGATGAAGATTAGAACGAGCGTCGAGTTCATTAAAGCTATAATATTGTCACAATAGAGAGGAAGGATGGAAGAATGATGATGAGAGCCAGCCATTGCATCTTCCCAGTTTCTTATATGCTCTGGGAGGTAACCTTCTTGAATCTCCAAATTTTGATCTTTGAAATTTTGTGTTGAACCCTTTTGTTTCTAAGAAACAGGAACTGAAATAGTATATTGTAGTTATTAATCTCCATTAGTAATAAATAGTTGCTCCAATGTTGTATGCCTATAAATGATCATCTTTAAAGTAGTTTAGCCATTAAGACTTGACTAATTCAAAGTACTTGCCATGCCATTATGAACCCAACGGTTTCAT

Coding sequence (CDS)

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCGCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTCAAAAGATTAAGAATTGCACGGAATAAAAAAACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCAGAACAAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGTAGCGTCCAACCAACTCCCAAGAAGATCAAATTTGATGAAGATTAG

Protein sequence

MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Homology
[Close]
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match: MK67I_DANRE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-27
Identity = 71/187 (37.97%), Postives = 107/187 (57.22%), Query Frame = 1 

Query: 19  LLSNKKESADFLPLEGGPGRKLPAQKPLESTAT-----VLYIARIPHGFFEKEMEGFFGQ 78
           L  N KE A+F        +K+   K    T       VLY+  +P G FE +++ +F Q
Sbjct: 15  LALNPKEDAEFQ-------KKVQQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQ 74

Query: 79  FGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVH 138
           FGKV RLR++R+KKTG S+ +G++EF+  EVAKIVA++M+NYL+ E I+K H+I PE VH
Sbjct: 75  FGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVH 134

Query: 139 PKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYEC 198
            KL+ G         +  + R   NK  T  + +K+  ++L +    +KR+ A GIDY+ 
Sbjct: 135 EKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDF 192

Query: 199 PEIVGSV 201
           P     +
Sbjct: 195 PGFAAQI 192

[Close]
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match: YQL5_SCHPO (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-26
Identity = 58/155 (37.42%), Postives = 100/155 (64.52%), Query Frame = 1 

Query: 38  RKLPAQKPLESTATVLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYI 97
           +K+   K L+    VLY+ R+PHGF+EK+M  +F QFG V RLR++RN+KTG S+H+ +I
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQ 157
           EF+S +VA +VA++MHNYLLY  +L+  +I  + VH  ++KG +     +  + + R + 
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLGEHRKLVERILKRNQARQKRIRAAGIDYE 193
            K  +  +  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

[Close]
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match: MK67I_XENTR (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-26
Identity = 60/143 (41.96%), Postives = 89/143 (62.24%), Query Frame = 1 

Query: 52  VLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADS 111
           V+YI  IP   +E ++  +F QFG V RLR++R+KKTG S+ + Y+EF+  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVE 171
           M+NYL  E +LK   + PE VHP+L+ G   +        + R   NK R+  E +K+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRNQARQKRIRAAGIDYECP 195
           R+L +    +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

[Close]
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match: MK67I_BOVIN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 68/185 (36.76%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 16  ATSLLS-NKKESADFLPLEGGPGRKLPAQKPLES-TATVLYIARIPHGFFEKEMEGFFGQ 75
           A  LLS N +E A F        R+   Q+  +  T  V+Y+  +P   +E ++  +F Q
Sbjct: 8   AKPLLSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQ 67

Query: 76  FGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVH 135
           FG V R R++R+KKTG S+ +G++EF+S +VAKI A++M+NYL  E +LK H I PE VH
Sbjct: 68  FGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVH 127

Query: 136 PKLWKGFNYRHIPLNWSELER-KKQNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYE 195
            +L++ +   H+P         K+ N+ R+L +  ++ ER  K+ +  +KR+   GIDY 
Sbjct: 128 EELFREW---HMPFKRPSYPAVKRYNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYN 187

Query: 196 CPEIV 198
            P +V
Sbjct: 188 FPSLV 189

[Close]
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match: MK67I_XENLA (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-25
Identity = 71/187 (37.97%), Postives = 107/187 (57.22%), Query Frame = 1 

Query: 9   MKKKLNKATSLLS-NKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPHGFFEKEM 68
           M ++L ++  LLS + K   DF        RK   +K    T  V+YI  IP    E ++
Sbjct: 1   MAEELVQSEKLLSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQL 60

Query: 69  EGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLI 128
           + +F QFG V RLR++R+KKTG S+ + Y+E++  EVAKIVAD+M+NYL  E +LK   +
Sbjct: 61  QEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFV 120

Query: 129 APEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQARQKRIRAA 188
            PE VHP+L+ G N R        + R   N +R   E +K+ +R++ +    +KR+   
Sbjct: 121 TPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEK 180

Query: 189 GIDYECP 195
           GIDY+ P
Sbjct: 181 GIDYDFP 182

[Close]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match: A0A0A0KCE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.6e-105
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKL  QKPLESTATVLYI RIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK  NKERTL EH+KLV+RILKR+QAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match: A0A0L9VUL8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g158100 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.8e-84
Identity = 152/211 (72.04%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MG KAKKAMKK + KA+S  +   E ADFLPLEGGP RKL  QKP E+T+TVLY++RIPH
Sbjct: 1   MGTKAKKAMKKNMKKASS--NKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLRIARNKKTGKSRHFGYIEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+VH++ PE+VH +LW+GF+YRH PL++ ++ERK+ +KERTL EH+KLVERILK +Q R
Sbjct: 121 LLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           +KRI AAGIDYE PEI+G++QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDYESPEIMGNIQPAPKKIKFDD 209

[Close]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match: A0A0L9UMC8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g132700 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-83
Identity = 148/211 (70.14%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MG KAKKAMKK +  A+S      + ADFLPLEGGP R++  QKPLE+T+TVL+++RIPH
Sbjct: 1   MGTKAKKAMKKNMKMASS--KQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKSRHFGYIEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+VH++ PEHVH +LW+GF+YRH PL++ ++ERK+ +KERTL EH+KLVERILK +Q R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G++QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

[Close]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match: A0A0S3SI61_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G120100 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-83
Identity = 148/211 (70.14%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MG KAKKAMKK +  A+S      + ADFLPLEGGP R++  QKPLE+T+TVL+++RIPH
Sbjct: 1   MGTKAKKAMKKNMKMASS--KQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKSRHFGYIEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+VH++ PEHVH +LW+GF+YRH PL++ ++ERK+ +KERTL EH+KLVERILK +Q R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G++QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

[Close]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match: A0A151RNG2_CAJCA (Putative RNA-binding protein C1827.05c family OS=Cajanus cajan GN=KK1_034414 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-82
Identity = 150/211 (71.09%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKA+KK + +A+S  S   + ADFLPLEGGP RKLP QKPLE+TATVLY+ RIPH
Sbjct: 1   MGAKAKKALKKNMKRASS--SKPSQGADFLPLEGGPARKLPEQKPLENTATVLYVGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLRI+RNK+TGKSRHFG+IEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRISRNKRTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+V++I PE VHP+LW+GFNYR+ PL+  E+ERK+ +KERTL E +KLVE+ILK ++ R
Sbjct: 121 LLQVYVIPPEQVHPRLWQGFNYRYKPLDTVEIERKRHDKERTLEEQKKLVEKILKHDKKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           + RI AAGIDYECPEIVG++QP PKKIKF++
Sbjct: 181 RLRIEAAGIDYECPEIVGNIQPAPKKIKFED 209

[Close]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match: AT5G04600.1 (AT5G04600.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 267.3 bits (682), Expect = 8.0e-72
Identity = 132/221 (59.73%), Postives = 172/221 (77.83%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLS--------NKKESADFLPLEGGPGRKLPAQKP-LESTAT 60
           MGAKAKKA+KK + K  +  S        N K SADFLPLEGGP RK P   P L++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADS 120
           VLYI RIPHGF+E E+E FF QFG VKR+R+ARNKKTGKS+HFG+I+F+ PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVE 180
           M++YLL EH+LKVH+I PE+V P LW+GF     P++  ++ER++ NKERTL EHRK+++
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRNQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +I+K++Q R+KRI AAGI+YECPE+VG+ QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

[Close]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match: AT1G03457.2 (AT1G03457.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 1 

Query: 37  GRKLPAQKPLESTATV-LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFG 96
           G  +P+    E  A   L+I  IP  F ++E+   F  FGKV   ++  +K TG S+ FG
Sbjct: 324 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383

Query: 97  YIEFDSPEVAKIVADSMHNYLLYEHILKVHL 127
           +I +DS   A+   ++M+   L    LKV L
Sbjct: 384 FISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414

[Close]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 31/110 (28.18%), Postives = 53/110 (48.18%), Query Frame = 1 

Query: 41  PAQKPLESTATV--LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIE 100
           P ++ +ES + +  L+I  I     E+ ++ +FG++G +    I R++ TG++R FG+I 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FDSPEVAKIVADSMH-----------------NYLLYEHILKVHLIAPEH 132
           F  P VA+ V    H                   +L  H   +HLI+P H
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

[Close]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match: AT3G52660.1 (AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 53  LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSM 112
           +Y+  IP    E +++GF G  G+V  +RI R K +G  + + ++ F S ++A    D++
Sbjct: 94  VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153

Query: 113 HNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKK 157
           +N       +K      +H   +L+ G    ++P NW E + KK
Sbjct: 154 NNTDFRGKRIKCSTTQAKH---RLFLG----NVPRNWMESDIKK 190

[Close]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 23/69 (33.33%), Postives = 39/69 (56.52%), Query Frame = 1 

Query: 46  LESTATVLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVA 105
           ++S    L+I  I     E+ ++ +F  FG+V    I +++ TG++R FG++ F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

[Close]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match: gi|659113449|ref|XP_008456579.1| (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 8.5e-108
Identity = 197/212 (92.92%), Postives = 204/212 (96.23%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRH PLNWSELERK+ NKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match: gi|449446269|ref|XP_004140894.1| (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.3e-105
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKL  QKPLESTATVLYI RIPH
Sbjct: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK  NKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 212

[Close]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match: gi|700190818|gb|KGN46022.1| (hypothetical protein Csa_6G044030 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.3e-105
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKL  QKPLESTATVLYI RIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK  NKERTL EH+KLV+RILKR+QAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match: gi|920719350|gb|KOM58547.1| (hypothetical protein LR48_Vigan11g158100 [Vigna angularis])

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83
Identity = 152/211 (72.04%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MG KAKKAMKK + KA+S  +   E ADFLPLEGGP RKL  QKP E+T+TVLY++RIPH
Sbjct: 1   MGTKAKKAMKKNMKKASS--NKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLRIARNKKTGKSRHFGYIEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+VH++ PE+VH +LW+GF+YRH PL++ ++ERK+ +KERTL EH+KLVERILK +Q R
Sbjct: 121 LLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           +KRI AAGIDYE PEI+G++QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDYESPEIMGNIQPAPKKIKFDD 209

[Close]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match: gi|920700497|gb|KOM43722.1| (hypothetical protein LR48_Vigan05g132700 [Vigna angularis])

HSP 1 Score: 317.0 bits (811), Expect = 2.5e-83
Identity = 148/211 (70.14%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MG KAKKAMKK +  A+S      + ADFLPLEGGP R++  QKPLE+T+TVL+++RIPH
Sbjct: 1   MGTKAKKAMKKNMKMASS--KQPSQGADFLPLEGGPARQIAEQKPLENTSTVLHVSRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GF+EKEMEG+FGQFG +KRLR+ARNKKTGKSRHFGYIEF+SPEVAKIVAD+MHNYLL+EH
Sbjct: 61  GFYEKEMEGYFGQFGTIKRLRVARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180
           +L+VH++ PEHVH +LW+GF+YRH PL++ ++ERK+ +KERTL EH+KLVERILK +Q R
Sbjct: 121 LLQVHVVPPEHVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDE 212
           +KRI AAGID+ECPEI+G++QP PKKIKFD+
Sbjct: 181 RKRIEAAGIDFECPEIMGNIQPAPKKIKFDD 209

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g24840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MK67I_DANRE9.6e-2737.97MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=... [more]
YQL5_SCHPO3.7e-2637.42Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra... [more]
MK67I_XENTR4.8e-2641.96MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis... [more]
MK67I_BOVIN1.8e-2536.76MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2... [more]
MK67I_XENLA5.3e-2537.97MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=... [more]
BLAST of Cp4.1LG01g24840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCE3_CUCSA1.6e-10591.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044030 PE=4 SV=1[more]
A0A0L9VUL8_PHAAN7.8e-8472.04Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g158100 PE=4 SV=1[more]
A0A0L9UMC8_PHAAN1.7e-8370.14Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g132700 PE=4 SV=1[more]
A0A0S3SI61_PHAAN1.7e-8370.14Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G120100 PE=... [more]
A0A151RNG2_CAJCA1.1e-8271.09Putative RNA-binding protein C1827.05c family OS=Cajanus cajan GN=KK1_034414 PE=... [more]
BLAST of Cp4.1LG01g24840 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04600.18.0e-7259.73 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G03457.22.0e-0634.07 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.12.0e-0628.18 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52660.13.4e-0627.88 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G07810.27.6e-0633.33 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG01g24840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113449|ref|XP_008456579.1|8.5e-10892.92PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo][more]
gi|449446269|ref|XP_004140894.1|2.3e-10591.04PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis sativus][more]
gi|700190818|gb|KGN46022.1|2.3e-10591.04hypothetical protein Csa_6G044030 [Cucumis sativus][more]
gi|920719350|gb|KOM58547.1|1.1e-8372.04hypothetical protein LR48_Vigan11g158100 [Vigna angularis][more]
gi|920700497|gb|KOM43722.1|2.5e-8370.14hypothetical protein LR48_Vigan05g132700 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24840.1Cp4.1LG01g24840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 53..121
score: 1.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..125
score: 3.3
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 51..129
score: 14
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 23..128
score: 3.3
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 31..138
score: 3.36
NoneNo IPR availableunknownCoilCoilcoord: 152..172
scor
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 152..195
score: 4.1E-23coord: 47..135
score: 4.1
NoneNo IPR availablePANTHERPTHR24012:SF243SUBFAMILY NOT NAMEDcoord: 152..195
score: 4.1E-23coord: 47..135
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g24840Cucsa.364800Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g24840CmaCh15G004810Cucurbita maxima (Rimu)cmacpeB309
Cp4.1LG01g24840CmaCh04G025310Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g24840CmoCh04G026510Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g24840CmoCh15G004890Cucurbita moschata (Rifu)cmocpeB272
Cp4.1LG01g24840Cla013709Watermelon (97103) v1cpewmB395
Cp4.1LG01g24840Csa6G044030Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g24840MELO3C019883Melon (DHL92) v3.5.1cpemeB396
Cp4.1LG01g24840ClCG08G008100Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g24840CSPI06G03810Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g24840Lsi08G006600Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g24840MELO3C019883.2Melon (DHL92) v3.6.1cpemedB460
Cp4.1LG01g24840CsaV3_6G004080Cucumber (Chinese Long) v3cpecucB0568
Cp4.1LG01g24840Bhi04G001024Wax gourdcpewgoB0527
Cp4.1LG01g24840CsGy6G003780Cucumber (Gy14) v2cgybcpeB797
Cp4.1LG01g24840Carg04605Silver-seed gourdcarcpeB0965
Cp4.1LG01g24840Carg02425Silver-seed gourdcarcpeB0367
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g24840Cp4.1LG13g10200Cucurbita pepo (Zucchini)cpecpeB207
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g24840Silver-seed gourdcarcpeB1158
Cp4.1LG01g24840Silver-seed gourdcarcpeB1176
Cp4.1LG01g24840Cucumber (Chinese Long) v3cpecucB0527
Cp4.1LG01g24840Wax gourdcpewgoB0560
Cp4.1LG01g24840Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG01g24840Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g24840Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g24840Cucurbita maxima (Rimu)cmacpeB734
Cp4.1LG01g24840Cucurbita moschata (Rifu)cmocpeB401
Cp4.1LG01g24840Cucurbita moschata (Rifu)cmocpeB687
Cp4.1LG01g24840Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g24840Bottle gourd (USVL1VR-Ls)cpelsiB365
Cp4.1LG01g24840Watermelon (Charleston Gray)cpewcgB398
Cp4.1LG01g24840Watermelon (97103) v1cpewmB438
Cp4.1LG01g24840Cucumber (Gy14) v2cgybcpeB635