Cucsa.362670 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.362670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ycf20-like protein
Location	scaffold03611 : 462337 .. 463777 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAACAAGTTATGTCCATCAATAAAAGTATTGAGTATTGGTTGCAGTTTCAAGATAATGTAATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGTAAGTCATACCACGATGGTGGACATTCTATTATTTACTTAAGGTAGTTGTAGTTGCTAGGTTGTATGTTAGTTATGCTATTCTTTTATGGCGTTATGAACTTTTTATTCCCCTCAATGTCAATTTGTTAAAGAAATGAAAATTATTAAGTCAGTCAAGTAGCTACTTGTTTTGTGCCTTTTCTGCCCTCTCTCAATCATTGTATTTGTACCATTCAACTTGTACTATAGTTTCCAAACTTGGTAGAACAGTTTGATTTCATAATTTCGTAGCGAAGGGTATAATAAAATTGTCCTTTGGCTCTTCCCTTGGTAACACAAGGGAAATAATGATTGTATATCTCAAGGGGAAACAACTATATGCTATTCATGAAAGACAAAAGGATGGCATGATGTCGAACAAATATTCTCATAATTTCGCTGGCCTTCAAAGTGTTAAAGATTGAGTCTTTCAGGGTAGGGAGAGGGAGCATAGTGAGATTTGGTTTTTGACTAGATTTCACATATCTATTTGGACTTCGATTTCAAAGAACTACTGTAATTATTCCATTAGTAACACTTTACTTAATTGGTCTCCCTTCTTTTAGTAGGGgTGTTTTGGTGGATTAGTTTTTTTGATGCCCTTGTATTCTACCCTTTTTtCTCAATGAAAGTTGTCGATCTCATAAaaAAAAAAAAaaCCATTCTGGACAATACTTGAAAAAAGTCATCATTGTACATTTCGTCTGACATATTTGTAATTTGTTGTTATTCTTTTTGGTACAGGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGG

mRNA sequence

ATGTCTGAACAAGTTATGTCCATCAATAAAAGTATTGAGTATTGGTTGCAGTTTCAAGATAATGTAATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGG

Coding sequence (CDS)

ATGTCTGAACAAGTTATGTCCATCAATAAAAGTATTGAGTATTGGTTGCAGTTTCAAGATAATGTAATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGG

Protein sequence

MSEQVMSINKSIEYWLQFQDNVMATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFKFEMDDIFX

Homology

[Close]

BLAST of Cucsa.362670 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-25
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1


Query: 74  SFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSN----GRTRLIRIIQAIQTKLNAR 133
           SF + +P+    F   AL    S+ G+  +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 134 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--AS 193
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 194 LPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 219
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

[Close]

BLAST of Cucsa.362670 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 113 TRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALA 172
           TRL      I   L+++I     N P+KIL  L+GF+ AT  ATV GQTGDWD+L A + 
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 173 VVVVEGIGALMYRASLPLLNKIKDL----ITMFNYWKAGLSMGLFLDSFK 219
           V ++E +G  MY        ++ D+    +   NY K GL  GLF+D+FK
Sbjct: 64  VAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

[Close]

BLAST of Cucsa.362670 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-10
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 112 RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAAL 171
           +TRL      +   LN ++      L   ++  L+GF+ +T  +T+ GQTGDW I++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 172 AVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 219
            V   E    ++Y +   L  K    I +FN +K G++ GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIK----INLFNNFKIGITYGLFVDAFK 105

[Close]

BLAST of Cucsa.362670 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 1


Query: 119 IQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEG 178
           +Q + ++L   +NEL   L    +  L+GF+ +T  +T+ GQTGDW I++A+L V  +E 
Sbjct: 14  VQNLSSRLYYSLNELTAGL----ISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIEL 73

Query: 179 IGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 219
           +  ++Y        K    I + N  K G++ GLF+D+FK
Sbjct: 74  VSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

[Close]

BLAST of Cucsa.362670 vs. TrEMBL
Match: A0A0A0K9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077990 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 6.1e-111
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1


Query: 23  MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 82
           MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 83  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 142
           LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 143 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 202
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 203 YWKAGLSMGLFLDSFKFEMDDIF 226
           YWKAGLSMGLFLDSFKFEMDDIF
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIF 203

[Close]

BLAST of Cucsa.362670 vs. TrEMBL
Match: A0A067HDA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.4e-60
Identity = 130/207 (62.80%), Postives = 158/207 (76.33%), Query Frame = 1


Query: 22  VMATSMRLLSTYPRTSKLQSP--NYPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 81
           +MAT++ L   Y  + +L  P   Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 2   MMATTVPL-PKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 61

Query: 82  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 141
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 62  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 121

Query: 142 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 201
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 122 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 181

Query: 202 ITMFNYWKAGLSMGLFLDSFKFEMDDI 225
           ITMFNYWKAGL++GLFLDSFK+EMD+I
Sbjct: 182 ITMFNYWKAGLTLGLFLDSFKYEMDNI 207

[Close]

BLAST of Cucsa.362670 vs. TrEMBL
Match: W9RWD2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023288 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.7e-58
Identity = 124/205 (60.49%), Postives = 148/205 (72.20%), Query Frame = 1


Query: 23  MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHH-QCCSFYVTKPS 82
           MAT++ + S  PR + L SP    +      L  C ++T       H  Q   F+VT+PS
Sbjct: 1   MATTV-VSSNCPRNAILPSPKCVGSGAPTFNLATCLHETVSAFSWKHSSQRGFFHVTRPS 60

Query: 83  VLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNLPLK 142
           +  N KKM+ SIR SV+ NP DP +SN  NG TRLIR IQ IQT+L ARI E++K  P+K
Sbjct: 61  LANNVKKMSWSIRNSVDSNPLDPSTSNGGNGTTRLIRAIQGIQTRLGARIQEIKKGFPVK 120

Query: 143 ILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITM 202
           +LFFL GFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR S P L K++ LIT+
Sbjct: 121 LLFFLAGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRGSFPFLKKMRSLITV 180

Query: 203 FNYWKAGLSMGLFLDSFKFEMDDIF 226
           FNYWK GLS+GLFLDSFK+EMDD+F
Sbjct: 181 FNYWKTGLSLGLFLDSFKYEMDDVF 204

[Close]

BLAST of Cucsa.362670 vs. TrEMBL
Match: M5XTJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021878mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 120/195 (61.54%), Postives = 142/195 (72.82%), Query Frame = 1


Query: 33  YPRTSKLQSPNYPRTRVSVPGLVACFYDT-YVLHGHLHHQCCSFYVTKPSVLKNFKKMAL 92
           YP++ KL S  + R+RV   GL   FY         L    C F + +P ++ NFK+M  
Sbjct: 10  YPKSVKLHSSKFVRSRVIALGLYPMFYKPPRAFRLKLSSSSCFFCIPQPLLVNNFKRMTW 69

Query: 93  SIRGSVEGNPFDP-PSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYS 152
           SIR SV+ +  DP P++ + G TRLIR IQAIQTKL  +I ELR+    K+LFFLVGFY 
Sbjct: 70  SIRSSVDSSGLDPSPTNGTTGTTRLIRAIQAIQTKLGGKIRELRRGFLFKVLFFLVGFYC 129

Query: 153 ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSM 212
           ATA+ATVIGQTGDWDILSAA AVVVVEGIGALMY+ASLPLL K + LITMFNYWKAGLSM
Sbjct: 130 ATAYATVIGQTGDWDILSAAFAVVVVEGIGALMYKASLPLLMKTRSLITMFNYWKAGLSM 189

Query: 213 GLFLDSFKFEMDDIF 226
           GLFLDSFK+E +DIF
Sbjct: 190 GLFLDSFKYEFNDIF 204

[Close]

BLAST of Cucsa.362670 vs. TrEMBL
Match: B9RW94_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176810 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-56
Identity = 124/217 (57.14%), Postives = 154/217 (70.97%), Query Frame = 1


Query: 10  KSIEYWLQFQDNVMATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGH-L 69
           +S  Y+L+ Q  +MAT M   S +P T+KL S    R+   V  L +C +       H L
Sbjct: 6   RSAFYFLRRQ--LMATVMTY-SNHPTTAKLPSRESLRSHTLVVSLTSCSHKPVCAFAHKL 65

Query: 70  HHQCCSFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSN-SNGRTRLIRIIQAIQTKLN 129
           + Q    YV +P    NF+++   IR S + +  DP SS  + G TRL+R IQA+QTK+ 
Sbjct: 66  YSQSSHVYVAEPFWDNNFRRITWQIRSSADSSGLDPSSSGRTRGGTRLLRAIQALQTKIV 125

Query: 130 ARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRAS 189
           ARI E+RKNLP+K+LFFLVGFY ATAFATVIGQTGDWDILSAALAV VVEGIGALMYRAS
Sbjct: 126 ARIQEIRKNLPIKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEGIGALMYRAS 185

Query: 190 LPLLNKIKDLITMFNYWKAGLSMGLFLDSFKFEMDDI 225
            PL N ++ LITMFNYWKAGLS+GLFLDSFK+++DD+
Sbjct: 186 FPLFNNMRSLITMFNYWKAGLSLGLFLDSFKYKIDDV 219

[Close]

BLAST of Cucsa.362670 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565))

HSP 1 Score: 174.9 bits (442), Expect = 5.7e-44
Identity = 86/155 (55.48%), Postives = 121/155 (78.06%), Query Frame = 1


Query: 72  CCSFYVTKPSVLKNFKKMA-LSIRGSVEGNPFDPPSSNSNGRT----RLIRIIQAIQTKL 131
           C   +  +P ++++ ++M+  +I+ SV G+ FDP S +S+  +    RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 132 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRA 191
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWD+LSA LAV+VVE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 192 SLPLLNKIKDLITMFNYWKAGLSMGLFLDSFKFEM 222
           S+PL+NK++  ITMFNYWK GL++GLFLDSFK+E+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190

[Close]

BLAST of Cucsa.362670 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565))

HSP 1 Score: 115.5 bits (288), Expect = 4.1e-26
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1


Query: 74  SFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSN----GRTRLIRIIQAIQTKLNAR 133
           SF + +P+    F   AL    S+ G+  +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 134 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--AS 193
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 194 LPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 219
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

[Close]

BLAST of Cucsa.362670 vs. NCBI nr
Match: gi|449454528|ref|XP_004145006.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 408.3 bits (1048), Expect = 8.8e-111
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1


Query: 23  MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 82
           MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 83  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 142
           LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 143 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 202
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 203 YWKAGLSMGLFLDSFKFEMDDIF 226
           YWKAGLSMGLFLDSFKFEMDDIF
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIF 203

[Close]

BLAST of Cucsa.362670 vs. NCBI nr
Match: gi|659120263|ref|XP_008460100.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 2.4e-100
Identity = 191/203 (94.09%), Postives = 192/203 (94.58%), Query Frame = 1


Query: 23  MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 82
           MATSMRLLSTYPRTSKLQSPNY RTRVSVPGLVACF        HLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYQRTRVSVPGLVACF--------HLHHQCCSFYVTKPSV 60

Query: 83  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 142
           LKNFKKMALSIRGSVEG+PFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLP KIL
Sbjct: 61  LKNFKKMALSIRGSVEGSPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPFKIL 120

Query: 143 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 202
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIK LITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 203 YWKAGLSMGLFLDSFKFEMDDIF 226
           YWKAGLSMGLFLDSFKFEMDDIF
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIF 195

[Close]

BLAST of Cucsa.362670 vs. NCBI nr
Match: gi|641867097|gb|KDO85781.1| (hypothetical protein CISIN_1g027310mg [Citrus sinensis])

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 130/207 (62.80%), Postives = 158/207 (76.33%), Query Frame = 1


Query: 22  VMATSMRLLSTYPRTSKLQSP--NYPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 81
           +MAT++ L   Y  + +L  P   Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 2   MMATTVPL-PKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 61

Query: 82  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 141
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 62  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 121

Query: 142 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 201
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 122 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 181

Query: 202 ITMFNYWKAGLSMGLFLDSFKFEMDDI 225
           ITMFNYWKAGL++GLFLDSFK+EMD+I
Sbjct: 182 ITMFNYWKAGLTLGLFLDSFKYEMDNI 207

[Close]

BLAST of Cucsa.362670 vs. NCBI nr
Match: gi|985467332|ref|XP_015389730.1| (PREDICTED: ycf20-like protein isoform X1 [Citrus sinensis])

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-59
Identity = 129/207 (62.32%), Postives = 158/207 (76.33%), Query Frame = 1


Query: 22  VMATSMRLLSTYPRTSKLQSP--NYPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 81
           +MAT++ L   Y  + +L  P   Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 2   MMATTVPL-PKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 61

Query: 82  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 141
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 62  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 121

Query: 142 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 201
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 122 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 181

Query: 202 ITMFNYWKAGLSMGLFLDSFKFEMDDI 225
           ITMFNYWKAGL++GLFLDSFK++MD+I
Sbjct: 182 ITMFNYWKAGLTLGLFLDSFKYKMDNI 207

[Close]

BLAST of Cucsa.362670 vs. NCBI nr
Match: gi|985467334|ref|XP_015389731.1| (PREDICTED: ycf20-like protein isoform X2 [Citrus sinensis])

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58
Identity = 128/204 (62.75%), Postives = 155/204 (75.98%), Query Frame = 1


Query: 22  VMATSMRLLSTYPRTSKLQSP--NYPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 81
           +MAT++ L   Y  + +L  P   Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 2   MMATTVPL-PKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 61

Query: 82  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 141
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 62  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 121

Query: 142 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 201
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 122 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 181

Query: 202 ITMFNYWKAGLSMGLFLDSFKFEM 222
           ITMFNYWKAGL++GLFLDSFK+EM
Sbjct: 182 ITMFNYWKAGLTLGLFLDSFKYEM 204

The following BLAST results are available for this feature:

BLAST of Cucsa.362670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	7.3e-25	41.72	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	1.2e-14	40.91	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	8.7e-10	33.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	5.7e-09	34.00	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]

BLAST of Cucsa.362670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U0_CUCSA	6.1e-111	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077990 PE=4 SV=1	[more]
A0A067HDA0_CITSI	6.4e-60	62.80	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1	[more]
W9RWD2_9ROSA	2.7e-58	60.49	Uncharacterized protein OS=Morus notabilis GN=L484_023288 PE=4 SV=1	[more]
M5XTJ5_PRUPE	1.1e-56	61.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021878mg PE=4 SV=1	[more]
B9RW94_RICCO	4.3e-56	57.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176810 PE=4 SV=1	[more]

BLAST of Cucsa.362670 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56830.1	5.7e-44	55.48	Protein of unknown function (DUF565)	[more]
AT1G65420.1	4.1e-26	41.72	Protein of unknown function (DUF565)	[more]

BLAST of Cucsa.362670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454528\|ref\|XP_004145006.1\|	8.8e-111	100.00	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659120263\|ref\|XP_008460100.1\|	2.4e-100	94.09	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|641867097\|gb\|KDO85781.1\|	9.2e-60	62.80	hypothetical protein CISIN_1g027310mg [Citrus sinensis]	[more]
gi\|985467332\|ref\|XP_015389730.1\|	2.7e-59	62.32	PREDICTED: ycf20-like protein isoform X1 [Citrus sinensis]	[more]
gi\|985467334\|ref\|XP_015389731.1\|	1.7e-58	62.75	PREDICTED: ycf20-like protein isoform X2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.362670.1	Cucsa.362670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 160..218 score: 7.0
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 21..226 score: 3.1
None	No IPR available	PANTHER	PTHR33787:SF3	SUBFAMILY NOT NAMED	coord: 21..226 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.362670	Cla006971	Watermelon (97103) v1	cgywmB666
Cucsa.362670	Csa6G077990	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.362670	MELO3C022491	Melon (DHL92) v3.5.1	cgymeB586
Cucsa.362670	ClCG06G000490	Watermelon (Charleston Gray)	cgywcgB620
Cucsa.362670	CSPI06G05980	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.362670	CmaCh17G000410	Cucurbita maxima (Rimu)	cgycmaB0998
Cucsa.362670	CmoCh17G000420	Cucurbita moschata (Rifu)	cgycmoB0999
Cucsa.362670	Lsi09G018910	Bottle gourd (USVL1VR-Ls)	cgylsiB583
Cucsa.362670	MELO3C022491.2	Melon (DHL92) v3.6.1	cgymedB586
Cucsa.362670	CsaV3_6G006290	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.362670	Cla97C06G109760	Watermelon (97103) v2	cgywmbB625
Cucsa.362670	Bhi12G002276	Wax gourd	cgywgoB724

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.362670	Cucumber (Chinese Long) v3	cgycucB553
Cucsa.362670	Watermelon (97103) v2	cgywmbB622
Cucsa.362670	Cucumber (Gy14) v1	cgycgyB130
Cucsa.362670	Cucurbita maxima (Rimu)	cgycmaB0990
Cucsa.362670	Cucurbita maxima (Rimu)	cgycmaB1007
Cucsa.362670	Cucurbita moschata (Rifu)	cgycmoB0992
Cucsa.362670	Cucurbita moschata (Rifu)	cgycmoB1007
Cucsa.362670	Wild cucumber (PI 183967)	cgycpiB537
Cucsa.362670	Cucumber (Chinese Long) v2	cgycuB509
Cucsa.362670	Melon (DHL92) v3.5.1	cgymeB594
Cucsa.362670	Watermelon (Charleston Gray)	cgywcgB617
Cucsa.362670	Watermelon (97103) v1	cgywmB663
Cucsa.362670	Cucurbita pepo (Zucchini)	cgycpeB0947
Cucsa.362670	Cucurbita pepo (Zucchini)	cgycpeB0954
Cucsa.362670	Cucurbita pepo (Zucchini)	cgycpeB0965
Cucsa.362670	Cucurbita pepo (Zucchini)	cgycpeB0969
Cucsa.362670	Bottle gourd (USVL1VR-Ls)	cgylsiB585
Cucsa.362670	Melon (DHL92) v3.6.1	cgymedB592
Cucsa.362670	Silver-seed gourd	carcgyB0271
Cucsa.362670	Silver-seed gourd	carcgyB0695
Cucsa.362670	Silver-seed gourd	carcgyB1079
Cucsa.362670	Silver-seed gourd	carcgyB1193