Csa6G077990 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G077990
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ycf20-like protein; contains IPR007572 (Uncharacterised protein family Ycf20)
Location	Chr6 : 5232358 .. 5234867 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGATTGTCTATCCGATGTTGAAGGTACGGCGCCAAAAAATTGCCCCCAGCCTAAGACCGCCGATTGATGAAAGAGAAGAACAGTTCTTGCTGCTAAACCTTTATGGGAGTAACGTCAAAGATACTCTGAGAGCTTGCTTGGCCTCCGATGTTGATCAGTGAGCACTCTATTCAACTTATTTCATGATCTTCTGGTCAATATTACTTCCATTTTCCCTCTCTGCGACCTGTTGCTGTTTATTTTCTAAAAACAAATTGGAGATGTTAAAGAGAACTATGAATAATCTTTGAGAAAAAAAATAGAGGGAGTTTAGGAAAGAACTTATCTCATAAGCTTTCTTTGTTGATTGTAATCTCGAATACACTGAGCTTGAAGATCTTATACGGTGGATGTAGCTATAATTGGCTGCGTGTTTCTTCATCTTTTATTTAAAGTTGTGAGTGAGTGAATGTTCAAATCCCTGTGTAATTGATGGAGAGAGAGCTTCTGTAAATCCTTTATTTTCTTCTTCTTCATTTGCTTGATTTTTGAAACCGTTGAATATTATTTTAAATTTGCCCACCGCTTGTGGGTTGAATGGGTGATTTAAGAGAAAGAAAGGAAACGAATTTATTGGGATGACCCAATCGTTTTATTTCAGTGTAATACAGAGCATGCTTGAAATCGAAAAATTGACAATAGGGAAAATTGTATCTGAATAATGCGAAGAAATAGTAAGTTTTGCCGTTGAGCTTGAACCACTTGCTTAGTGTTACTAACTGTAAGTTGTTTGGTTCGTGTCCATGAGGCAATGGGCAGAGAGGAGATTTAGATTAAAGAGAGAGAATTTTGATGTTATTTCTAAGGACATTTTGTTGATAAAGCTGTGAAGAAATGAAGGAAGTATCAGCTCCAAATCGCAAATGGAAACATATGAAACTCATAAAATTTTCCTTCATTGTTTTATCCCTTTTTGGAGATAACACAGGCCTGAATAATTAGTTTTGTGATGATTTTGTTGATTTTAAGACTATGTCTGAACAAGTTATGTCCATCAATAAAAGTATTGAGTATTGGTTGCAGTTTCAAGATAATGTAATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGTAAGTCATACCACGATGGTGGACATTCTATTATTTACTTAAGGTAGTTGTAGTTGCTAGGTTGTATGTTAGTTATGCTATTCTTTTATGGCGTTATGAACTTTTTATTCCCCTCAATGTCAATTTGTTAAAGAAATGAAAATTATTAAGTCAGTCAAGTAGCTACTTGTTTTGTGCCTTTTCTGCCCTCTCTCAATCATTGTATTTGTACCATTCAACTTGTACTATAGTTTCCAAACTTGGTAGAACAGTTTGATTTCATAATTTCGTAGCGAAGGGTATAATAAAATTGTCCTTTGGCTCTTCCCTTGGTAACACAAGGGAAATAATGATTGTATATCTCAAGGGGAAACAACTATATGCTATTCATGAAAGACAAAAGGATGGCATGATGTCGAACAAATATTCTCATAATTTCGCTGGCCTTCAAAGTGTTAAAGATTGAGTCTTTCAGGGTAGGGAGAGGGAGCATAGTGAGATTTGGTTTTTGACTAGATTTCACATATCTATTTGGACTTCGATTTCAAAGAACTACTGTAATTATTCCATTAGTAACACTTTACTTAATTGGTCTCCCTTCTTTTAGTAGGGGTGTTTTGGTGGATTAGTTTTTTTGATGCCCTTGTATTCTACCCTTTTTTCTCAATGAAAGTTGTCGATCTCATAAAAAAAAAAAAAAACCATTCTGGACAATACTTGAAAAAAGTCATCATTGTACATTTCGTCTGACATATTTGTAATTTGTTGTTATTCTTTTTGGTACAGGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTATTAA

mRNA sequence

ATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTATTAA

Coding sequence (CDS)

ATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGTGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTATTAA

Protein sequence

MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY*

Homology

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BLAST of Csa6G077990 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 7.2e-25
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 1


Query: 52  SFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSN----GRTRLIRIIQAIQTKLNAR 111
           SF + +P+    F   AL    S+ G+  +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 112 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--AS 171
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 172 LPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 197
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

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BLAST of Csa6G077990 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1


Query: 91  TRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALA 150
           TRL      I   L+++I     N P+KIL  L+GF+ AT  ATV GQTGDWD+L A + 
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 151 VVVVEGIGALMYRASLPLLNKIKDL----ITMFNYWKAGLSMGLFLDSFK 197
           V ++E +G  MY        ++ D+    +   NY K GL  GLF+D+FK
Sbjct: 64  VAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

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BLAST of Csa6G077990 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 90  RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAAL 149
           +TRL      +   LN ++      L   ++  L+GF+ +T  +T+ GQTGDW I++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 150 AVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 197
            V   E    ++Y +   L  K    I +FN +K G++ GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIK----INLFNNFKIGITYGLFVDAFK 105

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BLAST of Csa6G077990 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 34/100 (34.00%), Postives = 55/100 (55.00%), Query Frame = 1


Query: 97  IQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEG 156
           +Q + ++L   +NEL   L    +  L+GF+ +T  +T+ GQTGDW I++A+L V  +E 
Sbjct: 14  VQNLSSRLYYSLNELTAGL----ISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIEL 73

Query: 157 IGALMYRASLPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 197
           +  ++Y        K    I + N  K G++ GLF+D+FK
Sbjct: 74  VSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

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BLAST of Csa6G077990 vs. TrEMBL
Match: A0A0A0K9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077990 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.2e-122
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60
           MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 222
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 221

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BLAST of Csa6G077990 vs. TrEMBL
Match: W9RWD2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023288 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.4e-61
Identity = 128/212 (60.38%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHH-QCCSFYVTKPS 60
           MAT++ + S  PR + L SP    +      L  C ++T       H  Q   F+VT+PS
Sbjct: 1   MATTV-VSSNCPRNAILPSPKCVGSGAPTFNLATCLHETVSAFSWKHSSQRGFFHVTRPS 60

Query: 61  VLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNLPLK 120
           +  N KKM+ SIR SV+ NP DP +SN  NG TRLIR IQ IQT+L ARI E++K  P+K
Sbjct: 61  LANNVKKMSWSIRNSVDSNPLDPSTSNGGNGTTRLIRAIQGIQTRLGARIQEIKKGFPVK 120

Query: 121 ILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITM 180
           +LFFL GFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR S P L K++ LIT+
Sbjct: 121 LLFFLAGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRGSFPFLKKMRSLITV 180

Query: 181 FNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFH 211
           FNYWK GLS+GLFLDSFK+EMDD+FG  NLF+
Sbjct: 181 FNYWKTGLSLGLFLDSFKYEMDDVFGFSNLFN 211

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BLAST of Csa6G077990 vs. TrEMBL
Match: A0A067HDA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 129/209 (61.72%), Postives = 155/209 (74.16%), Query Frame = 1


Query: 5   MRLLSTYPRTSKLQSPN-------YPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 64
           M + +T P    + SP        Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60

Query: 65  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 124
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120

Query: 125 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 184
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180

Query: 185 ITMFNYWKAGLSMGLFLDSFKFEMDDIFG 205
           ITMFNYWKAGL++GLFLDSFK+EMD+I G
Sbjct: 181 ITMFNYWKAGLTLGLFLDSFKYEMDNIIG 209

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BLAST of Csa6G077990 vs. TrEMBL
Match: M5XTJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021878mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.5e-58
Identity = 123/205 (60.00%), Postives = 147/205 (71.71%), Query Frame = 1


Query: 11  YPRTSKLQSPNYPRTRVSVPGLVACFYDT-YVLHGHLHHQCCSFYVTKPSVLKNFKKMAL 70
           YP++ KL S  + R+RV   GL   FY         L    C F + +P ++ NFK+M  
Sbjct: 10  YPKSVKLHSSKFVRSRVIALGLYPMFYKPPRAFRLKLSSSSCFFCIPQPLLVNNFKRMTW 69

Query: 71  SIRGSVEGNPFDP-PSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYS 130
           SIR SV+ +  DP P++ + G TRLIR IQAIQTKL  +I ELR+    K+LFFLVGFY 
Sbjct: 70  SIRSSVDSSGLDPSPTNGTTGTTRLIRAIQAIQTKLGGKIRELRRGFLFKVLFFLVGFYC 129

Query: 131 ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAGLSM 190
           ATA+ATVIGQTGDWDILSAA AVVVVEGIGALMY+ASLPLL K + LITMFNYWKAGLSM
Sbjct: 130 ATAYATVIGQTGDWDILSAAFAVVVVEGIGALMYKASLPLLMKTRSLITMFNYWKAGLSM 189

Query: 191 GLFLDSFKFEMDDIFGLHNLFHLYL 214
           GLFLDSFK+E +DIFG  + F+  L
Sbjct: 190 GLFLDSFKYEFNDIFGFSSPFNFEL 214

[Close]

BLAST of Csa6G077990 vs. TrEMBL
Match: A0A067JJT7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25873 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.5e-57
Identity = 126/223 (56.50%), Postives = 152/223 (68.16%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVTKPS 60
           MAT M   S YPR   L S    R+   V     CF+      G  L  QC   Y+ +P 
Sbjct: 1   MATLMTSPS-YPRNINLSSGECLRSGAVVVKFEGCFHTVASAFGQKLCSQCSYVYLAEPY 60

Query: 61  VLKNFKKMALSIRGSVEGNPFDPPSSNSN-GRTRLIRIIQAIQTKLNARINELRKNLPLK 120
              NF++ A  I+ S + +  DP SS+SN G TRL+R IQA+QTK+  RI E+RKNLP+K
Sbjct: 61  WDNNFRRAAWQIKSSTDSSGLDPSSSSSNSGGTRLVRAIQALQTKIVGRIQEIRKNLPMK 120

Query: 121 ILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITM 180
           +LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRAS PL N ++ LITM
Sbjct: 121 LLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASFPLFNNVRSLITM 180

Query: 181 FNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 222
           FNYWKAGLS+GLFLDSFK+E +DI    N F+  + ++ P  +
Sbjct: 181 FNYWKAGLSLGLFLDSFKYEFNDIMNYSNPFYFEM-DIFPFFF 221

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BLAST of Csa6G077990 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565))

HSP 1 Score: 174.9 bits (442), Expect = 5.6e-44
Identity = 86/155 (55.48%), Postives = 119/155 (76.77%), Query Frame = 1


Query: 50  CCSFYVTKPSVLKNFKKMA-LSIRGSVEGNPFDPPSSNSNGRT----RLIRIIQAIQTKL 109
           C   +  +P ++++ ++M+  +I+ SV G+ FDP S +S+  +    RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 110 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRA 169
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWD+LSA LAV+VVE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 170 SLPLLNKIKDLITMFNYWKAGLSMGLFLDSFKFEM 200
           S+PL+NK++  ITMFNYWK GL++GLFLDSFK+E+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190

[Close]

BLAST of Csa6G077990 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565))

HSP 1 Score: 115.5 bits (288), Expect = 4.1e-26
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 1


Query: 52  SFYVTKPSVLKNFKKMALSIRGSVEGNPFDPPSSNSN----GRTRLIRIIQAIQTKLNAR 111
           SF + +P+    F   AL    S+ G+  +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 112 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--AS 171
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 172 LPLLNKIKDLITMFNYWKAGLSMGLFLDSFK 197
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

[Close]

BLAST of Csa6G077990 vs. NCBI nr
Match: gi|449454528|ref|XP_004145006.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 1.7e-122
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60
           MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 222
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 221

[Close]

BLAST of Csa6G077990 vs. NCBI nr
Match: gi|659120263|ref|XP_008460100.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 8.6e-111
Identity = 207/221 (93.67%), Postives = 209/221 (94.57%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60
           MATSMRLLSTYPRTSKLQSPNY RTRVSVPGLVACF        HLHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYQRTRVSVPGLVACF--------HLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEG+PFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLP KIL
Sbjct: 61  LKNFKKMALSIRGSVEGSPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPFKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180
           FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIK LITMFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 222
           YWKAGLSMGLFLDSFKFEMDDIFG+HNLFHLYLHNVI IIY
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGIHNLFHLYLHNVIRIIY 213

[Close]

BLAST of Csa6G077990 vs. NCBI nr
Match: gi|703129327|ref|XP_010104337.1| (hypothetical protein L484_023288 [Morus notabilis])

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 128/212 (60.38%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHH-QCCSFYVTKPS 60
           MAT++ + S  PR + L SP    +      L  C ++T       H  Q   F+VT+PS
Sbjct: 1   MATTV-VSSNCPRNAILPSPKCVGSGAPTFNLATCLHETVSAFSWKHSSQRGFFHVTRPS 60

Query: 61  VLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNLPLK 120
           +  N KKM+ SIR SV+ NP DP +SN  NG TRLIR IQ IQT+L ARI E++K  P+K
Sbjct: 61  LANNVKKMSWSIRNSVDSNPLDPSTSNGGNGTTRLIRAIQGIQTRLGARIQEIKKGFPVK 120

Query: 121 ILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITM 180
           +LFFL GFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR S P L K++ LIT+
Sbjct: 121 LLFFLAGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRGSFPFLKKMRSLITV 180

Query: 181 FNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFH 211
           FNYWK GLS+GLFLDSFK+EMDD+FG  NLF+
Sbjct: 181 FNYWKTGLSLGLFLDSFKYEMDDVFGFSNLFN 211

[Close]

BLAST of Csa6G077990 vs. NCBI nr
Match: gi|641867097|gb|KDO85781.1| (hypothetical protein CISIN_1g027310mg [Citrus sinensis])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 129/209 (61.72%), Postives = 155/209 (74.16%), Query Frame = 1


Query: 5   MRLLSTYPRTSKLQSPN-------YPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 64
           M + +T P    + SP        Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60

Query: 65  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 124
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120

Query: 125 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 184
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180

Query: 185 ITMFNYWKAGLSMGLFLDSFKFEMDDIFG 205
           ITMFNYWKAGL++GLFLDSFK+EMD+I G
Sbjct: 181 ITMFNYWKAGLTLGLFLDSFKYEMDNIIG 209

[Close]

BLAST of Csa6G077990 vs. NCBI nr
Match: gi|985467332|ref|XP_015389730.1| (PREDICTED: ycf20-like protein isoform X1 [Citrus sinensis])

HSP 1 Score: 239.6 bits (610), Expect = 5.3e-60
Identity = 128/209 (61.24%), Postives = 155/209 (74.16%), Query Frame = 1


Query: 5   MRLLSTYPRTSKLQSPN-------YPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 64
           M + +T P    + SP        Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60

Query: 65  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 124
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120

Query: 125 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 184
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180

Query: 185 ITMFNYWKAGLSMGLFLDSFKFEMDDIFG 205
           ITMFNYWKAGL++GLFLDSFK++MD+I G
Sbjct: 181 ITMFNYWKAGLTLGLFLDSFKYKMDNIIG 209

The following BLAST results are available for this feature:

BLAST of Csa6G077990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	7.2e-25	41.72	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	1.2e-14	40.91	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	8.6e-10	33.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	5.6e-09	34.00	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]

BLAST of Csa6G077990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U0_CUCSA	1.2e-122	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077990 PE=4 SV=1	[more]
W9RWD2_9ROSA	7.4e-61	60.38	Uncharacterized protein OS=Morus notabilis GN=L484_023288 PE=4 SV=1	[more]
A0A067HDA0_CITSI	1.3e-60	61.72	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1	[more]
M5XTJ5_PRUPE	4.5e-58	60.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021878mg PE=4 SV=1	[more]
A0A067JJT7_JATCU	6.5e-57	56.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25873 PE=4 SV=1	[more]

BLAST of Csa6G077990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56830.1	5.6e-44	55.48	Protein of unknown function (DUF565)	[more]
AT1G65420.1	4.1e-26	41.72	Protein of unknown function (DUF565)	[more]

BLAST of Csa6G077990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454528\|ref\|XP_004145006.1\|	1.7e-122	100.00	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659120263\|ref\|XP_008460100.1\|	8.6e-111	93.67	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|703129327\|ref\|XP_010104337.1\|	1.1e-60	60.38	hypothetical protein L484_023288 [Morus notabilis]	[more]
gi\|641867097\|gb\|KDO85781.1\|	1.8e-60	61.72	hypothetical protein CISIN_1g027310mg [Citrus sinensis]	[more]
gi\|985467332\|ref\|XP_015389730.1\|	5.3e-60	61.24	PREDICTED: ycf20-like protein isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0061025	membrane fusion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005484	SNAP receptor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU133643	cucumber EST collection version 3.0	transcribed_cluster
CU174947	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G077990.1	Csa6G077990.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU174947	CU174947	transcribed_cluster
CU133643	CU133643	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 138..196 score: 6.8
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..206 score: 1.8
None	No IPR available	PANTHER	PTHR33787:SF3	SUBFAMILY NOT NAMED	coord: 1..206 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G077990	Cla006971	Watermelon (97103) v1	cuwmB537
Csa6G077990	MELO3C022491	Melon (DHL92) v3.5.1	cumeB442
Csa6G077990	ClCG06G000490	Watermelon (Charleston Gray)	cuwcgB476
Csa6G077990	MELO3C022491.2	Melon (DHL92) v3.6.1	cumedB422
Csa6G077990	Cla97C06G109760	Watermelon (97103) v2	cuwmbB468
Csa6G077990	Bhi12G002276	Wax gourd	cuwgoB544
Csa6G077990	CSPI06G05980	Wild cucumber (PI 183967)	cpicuB314
Csa6G077990	Cucsa.362670	Cucumber (Gy14) v1	cgycuB511
Csa6G077990	CmaCh17G000410	Cucurbita maxima (Rimu)	cmacuB369
Csa6G077990	CmoCh17G000420	Cucurbita moschata (Rifu)	cmocuB359
Csa6G077990	Cp4.1LG12g00490	Cucurbita pepo (Zucchini)	cpecuB143
Csa6G077990	CsGy6G005970	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G077990	Silver-seed gourd	carcuB0259
Csa6G077990	Silver-seed gourd	carcuB0645
Csa6G077990	Silver-seed gourd	carcuB0976
Csa6G077990	Silver-seed gourd	carcuB1096
Csa6G077990	Watermelon (97103) v2	cuwmbB460
Csa6G077990	Cucumber (Chinese Long) v2	cucuB111
Csa6G077990	Cucumber (Gy14) v1	cgycuB374
Csa6G077990	Cucurbita maxima (Rimu)	cmacuB269
Csa6G077990	Cucurbita maxima (Rimu)	cmacuB841
Csa6G077990	Cucurbita maxima (Rimu)	cmacuB895
Csa6G077990	Cucurbita moschata (Rifu)	cmocuB257
Csa6G077990	Cucurbita moschata (Rifu)	cmocuB829
Csa6G077990	Cucurbita moschata (Rifu)	cmocuB880
Csa6G077990	Melon (DHL92) v3.5.1	cumeB494
Csa6G077990	Watermelon (Charleston Gray)	cuwcgB470
Csa6G077990	Watermelon (97103) v1	cuwmB493
Csa6G077990	Cucurbita pepo (Zucchini)	cpecuB323
Csa6G077990	Cucurbita pepo (Zucchini)	cpecuB629
Csa6G077990	Cucurbita pepo (Zucchini)	cpecuB877
Csa6G077990	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G077990	Bottle gourd (USVL1VR-Ls)	culsiB462
Csa6G077990	Cucumber (Gy14) v2	cgybcuB138
Csa6G077990	Melon (DHL92) v3.6.1	cumedB474