Cucsa.356780 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.356780
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	scaffold03577 : 1676780 .. 1677396 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTAAACCCTTCATTTCCATCCATTTTTCTCCCAAAATCCAACAACCCCATCTTCAAATCTATGTTCCCAATTCAATTCTCTCTCTCAAAACCCTTTTCATTTtCTGAATCGATCTTCTCCCTCACAAGTTCTTAAACCCCCTTCATTTCACTGTTTGGAGTTGCATGATGATGATGATGTCTAGCTATGGCGCTGGATTCTCCTTCCTTTTTCTGCTTTTTCTCGCTGTTTTGGCTACTGGGAATCAACTTAGTTTCACTCAAGTGAGTTCCCTTTTCACCATTTTGCTTAATTCATCCATCCCACTTGGTTTTGTCTGAGTTTTATTTGATGGGGTTTTCTTGAATCTTTtGTTTTtCCAGTCTAATGGGTCTGTCGCTGAGATGGTGCCTCTCATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAGACTAGGGAGCTTCCAAATTTGTGCTCCTTGCACTTGCTGTGGTGGAGCTAAGGGTCTGTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCTAATAGGCCATTTGGTTTTTGCTCATTCACTCCCAAATCATGTAATTGCTTTGGATGCAATCTCTAG

mRNA sequence

CCTCTAAACCCTTCATTTCCATCCATTTTTCTCCCAAAATCCAACAACCCCATCTTCAAATCTATGTTCCCAATTCAATTCTCTCTCTCAAAACCCTTTTCATTTTCTGAATCGATCTTCTCCCTCACAAGTTCTTAAACCCCCTTCATTTCACTGTTTGGAGTTGCATGATGATGATGATGTCTAGCTATGGCGCTGGATTCTCCTTCCTTTTTCTGCTTTTTCTCGCTGTTTTGGCTACTGGGAATCAACTTAGTTTCACTCAATCTAATGGGTCTGTCGCTGAGATGGTGCCTCTCATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAGACTAGGGAGCTTCCAAATTTGTGCTCCTTGCACTTGCTGTGGTGGAGCTAAGGGTCTGTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCTAATAGGCCATTTGGTTTTTGCTCATTCACTCCCAAATCATGTAATTGCTTTGGATGCAATCTCTAG

Coding sequence (CDS)

ATGATGATGATGATGTCTAGCTATGGCGCTGGATTCTCCTTCCTTTTTCTGCTTTTTCTCGCTGTTTTGGCTACTGGGAATCAACTTAGTTTCACTCAATCTAATGGGTCTGTCGCTGAGATGGTGCCTCTCATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAGACTAGGGAGCTTCCAAATTTGTGCTCCTTGCACTTGCTGTGGTGGAGCTAAGGGTCTGTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCTAATAGGCCATTTGGTTTTTGCTCATTCACTCCCAAATCATGTAATTGCTTTGGATGCAATCTCTAG

Protein sequence

MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL*

Homology

[Close]

BLAST of Cucsa.356780 vs. TrEMBL
Match: A0A0A0LXU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659030 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 4.9e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60
           MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR
Sbjct: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60

Query: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL
Sbjct: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Cucsa.356780 vs. TrEMBL
Match: E5GBK4_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.6e-62
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60
           MM MMSSYGAGFSFLFLLFL VLATGN+LSFTQSNGSVAEMVPLIEEGKMN+MEMNETRR
Sbjct: 1   MMTMMSSYGAGFSFLFLLFLTVLATGNELSFTQSNGSVAEMVPLIEEGKMNVMEMNETRR 60

Query: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL
Sbjct: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Cucsa.356780 vs. TrEMBL
Match: A0A061EZN4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 1


Query: 4   MMSSYGAGFSFLFLLFLAVLATGNQL-SFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRL 63
           M S+YG     LFLLF A +   N+  S  Q NGS +EMVPL+EE  M MM  NE+RR+L
Sbjct: 1   MKSAYGVTLFLLFLLFSAYVFNYNEATSMAQVNGS-SEMVPLVEEKMMKMMMFNESRRKL 60

Query: 64  GSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           GSFQICA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CNCFGC+L
Sbjct: 61  GSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 113

[Close]

BLAST of Cucsa.356780 vs. TrEMBL
Match: W9S703_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-40
Identity = 82/120 (68.33%), Postives = 95/120 (79.17%), Query Frame = 1


Query: 4   MMSSYGAGFSFLFLLFLA-VLATGNQLSFTQSNGSVA------EMVPLIEEGKMNMMEMN 63
           MM +YG  FS + LLFLA V+ T  + S    NGS A       +VPL+EEGKM MM MN
Sbjct: 1   MMPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKMEMM-MN 60

Query: 64  ETRRRLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           E+RR+LGSFQICA CTCCGGA+G+CLPSPCCYAINCNIP+RPFGFCSFTPK+CNCFGC+L
Sbjct: 61  ESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 119

[Close]

BLAST of Cucsa.356780 vs. TrEMBL
Match: M5W0E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.5e-40
Identity = 79/126 (62.70%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 4   MMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGS-------------VAEMVPLIEEGKM 63
           MM ++G  FS +FLLFLA + T  + S T +NGS             V  +VPL+     
Sbjct: 49  MMPAHGVTFSLIFLLFLATVLTTTEASLTHANGSSAVAAAATDKKDKVEPLVPLVGAENF 108

Query: 64  NMMEMNETRRRLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCN 117
             + MNETRRRLGSFQICA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CN
Sbjct: 109 KTLVMNETRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCN 168

[Close]

BLAST of Cucsa.356780 vs. TAIR10
Match: AT1G65295.1 (AT1G65295.1 unknown protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-35
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 15  LFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRLGSFQICAPCTCC 74
           LF +F++     N++   + +  +  MVPL EE     M MNETRR+LGSFQIC+ CTCC
Sbjct: 18  LFSIFISSSHQANEVLPAEGDNEMM-MVPLGEE---KFMVMNETRRKLGSFQICSVCTCC 77

Query: 75  GGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           GGAKGLCLPSPCCYAINCNIPNRPFG+CSFTPK+CNCFGC++
Sbjct: 78  GGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115

[Close]

BLAST of Cucsa.356780 vs. TAIR10
Match: AT5G01015.1 (AT5G01015.1 unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 8.4e-15
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1


Query: 17  LLFLAVLATGNQLSFTQSNGS---VAEMVPLIEEGKMNMMEMNETRRRLGS-FQICAPCT 76
           ++FL +LAT    +  Q +G+     EM P +E G    ME    RR+L +  ++C  C 
Sbjct: 8   VIFLGLLATILVTTNGQGDGTGLNAEEMWP-VEVG----MEYRVWRRKLMTPLELCLECK 67

Query: 77  CCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           CC      C   PCC+ INC +PN+PFG C+F PKSC+C  C++
Sbjct: 68  CCSSTT--CATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104

[Close]

BLAST of Cucsa.356780 vs. NCBI nr
Match: gi|449449623|ref|XP_004142564.1| (PREDICTED: uncharacterized protein LOC101221700 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 7.1e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60
           MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR
Sbjct: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60

Query: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL
Sbjct: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Cucsa.356780 vs. NCBI nr
Match: gi|659085991|ref|XP_008443711.1| (PREDICTED: uncharacterized protein LOC103487235 [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 6.6e-62
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MMMMMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 60
           MM MMSSYGAGFSFLFLLFL VLATGN+LSFTQSNGSVAEMVPLIEEGKMN+MEMNETRR
Sbjct: 1   MMTMMSSYGAGFSFLFLLFLTVLATGNELSFTQSNGSVAEMVPLIEEGKMNVMEMNETRR 60

Query: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL
Sbjct: 61  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Cucsa.356780 vs. NCBI nr
Match: gi|720093146|ref|XP_010245965.1| (PREDICTED: uncharacterized protein LOC104589366 [Nelumbo nucifera])

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 83/116 (71.55%), Postives = 92/116 (79.31%), Query Frame = 1


Query: 5   MSSYGAGFSFLFLLFLAVLATGNQ----LSFTQSNGSVAEMVPLIEEGKMNMMEMNETRR 64
           MS +G  FS+LFLLF A + T NQ        Q+N + AEMVPLIE G +  M +NETRR
Sbjct: 1   MSGFGVVFSYLFLLFSATIITLNQGMSVHGLDQNNTAAAEMVPLIEPGTVKTMVLNETRR 60

Query: 65  RLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           RLGSFQICA CTCCGG +GLCLPSPCCYAINCNIPNRPFGFCSFTPK+CNCFGCNL
Sbjct: 61  RLGSFQICALCTCCGGPRGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCNL 116

[Close]

BLAST of Cucsa.356780 vs. NCBI nr
Match: gi|590638447|ref|XP_007029395.1| (Uncharacterized protein TCM_025264 [Theobroma cacao])

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 1


Query: 4   MMSSYGAGFSFLFLLFLAVLATGNQL-SFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRL 63
           M S+YG     LFLLF A +   N+  S  Q NGS +EMVPL+EE  M MM  NE+RR+L
Sbjct: 1   MKSAYGVTLFLLFLLFSAYVFNYNEATSMAQVNGS-SEMVPLVEEKMMKMMMFNESRRKL 60

Query: 64  GSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           GSFQICA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CNCFGC+L
Sbjct: 61  GSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 113

[Close]

BLAST of Cucsa.356780 vs. NCBI nr
Match: gi|703154914|ref|XP_010111066.1| (hypothetical protein L484_015121 [Morus notabilis])

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 82/120 (68.33%), Postives = 95/120 (79.17%), Query Frame = 1


Query: 4   MMSSYGAGFSFLFLLFLA-VLATGNQLSFTQSNGSVA------EMVPLIEEGKMNMMEMN 63
           MM +YG  FS + LLFLA V+ T  + S    NGS A       +VPL+EEGKM MM MN
Sbjct: 1   MMPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKMEMM-MN 60

Query: 64  ETRRRLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 117
           E+RR+LGSFQICA CTCCGGA+G+CLPSPCCYAINCNIP+RPFGFCSFTPK+CNCFGC+L
Sbjct: 61  ESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 119

The following BLAST results are available for this feature:

BLAST of Cucsa.356780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXU3_CUCSA	4.9e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659030 PE=4 SV=1	[more]
E5GBK4_CUCME	4.6e-62	96.55	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061EZN4_THECC	1.0e-40	71.93	Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1	[more]
W9S703_9ROSA	1.7e-40	68.33	Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1	[more]
M5W0E2_PRUPE	6.5e-40	62.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1	[more]

BLAST of Cucsa.356780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65295.1	1.1e-35	64.71	unknown protein	[more]
AT5G01015.1	8.4e-15	39.42	unknown protein	[more]

BLAST of Cucsa.356780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449623\|ref\|XP_004142564.1\|	7.1e-64	100.00	PREDICTED: uncharacterized protein LOC101221700 [Cucumis sativus]	[more]
gi\|659085991\|ref\|XP_008443711.1\|	6.6e-62	96.55	PREDICTED: uncharacterized protein LOC103487235 [Cucumis melo]	[more]
gi\|720093146\|ref\|XP_010245965.1\|	2.6e-42	71.55	PREDICTED: uncharacterized protein LOC104589366 [Nelumbo nucifera]	[more]
gi\|590638447\|ref\|XP_007029395.1\|	1.4e-40	71.93	Uncharacterized protein TCM_025264 [Theobroma cacao]	[more]
gi\|703154914\|ref\|XP_010111066.1\|	2.5e-40	68.33	hypothetical protein L484_015121 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.356780.1	Cucsa.356780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 37..116 score: 5.2
None	No IPR available	PANTHER	PTHR33786:SF2	SUBFAMILY NOT NAMED	coord: 37..116 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.356780	Cla009573	Watermelon (97103) v1	cgywmB638
Cucsa.356780	Csa1G659030	Cucumber (Chinese Long) v2	cgycuB500
Cucsa.356780	MELO3C010069	Melon (DHL92) v3.5.1	cgymeB574
Cucsa.356780	ClCG03G010850	Watermelon (Charleston Gray)	cgywcgB605
Cucsa.356780	CSPI01G32410	Wild cucumber (PI 183967)	cgycpiB528
Cucsa.356780	CmaCh10G008290	Cucurbita maxima (Rimu)	cgycmaB0969
Cucsa.356780	CmaCh11G009430	Cucurbita maxima (Rimu)	cgycmaB0970
Cucsa.356780	CmoCh11G009670	Cucurbita moschata (Rifu)	cgycmoB0973
Cucsa.356780	CmoCh10G008580	Cucurbita moschata (Rifu)	cgycmoB0972
Cucsa.356780	Lsi06G007070	Bottle gourd (USVL1VR-Ls)	cgylsiB573
Cucsa.356780	Cp4.1LG18g02460	Cucurbita pepo (Zucchini)	cgycpeB0928
Cucsa.356780	Cp4.1LG00g01590	Cucurbita pepo (Zucchini)	cgycpeB0927
Cucsa.356780	MELO3C010069.2	Melon (DHL92) v3.6.1	cgymedB575
Cucsa.356780	CsaV3_1G044590	Cucumber (Chinese Long) v3	cgycucB542
Cucsa.356780	Cla97C03G061410	Watermelon (97103) v2	cgywmbB608
Cucsa.356780	Carg17791	Silver-seed gourd	carcgyB1085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.356780	Wax gourd	cgywgoB709