CmoCh11G009670 (gene) Cucurbita moschata (Rifu)

NameCmoCh11G009670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin carboxyl-terminal hydrolase 15
LocationCmo_Chr11 : 5089939 .. 5091244 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGTAAAATAATGTATTTCTTACGGTTCAAAGGCTCACAGACCAGAATCACAGCTGATTAATGATGTCGGATGGCTTCGTTTTAAAGCAAAGAAATCCACTGATTCATATTTTTCACATAATCACATCTCTCACATTCATACTTAGCCGAAAGCCCATTTCAAAGCACCGAAGATTTCCCATTTTTTTTAACGTTAAATCAAAAGACATTCCGCCAATTCCATCAATTCCAGCAATGGGCTTCGCGTTTCACACGCTACCACCATCAAAATCTCTCCTCTAAACCCTTCATTTCCAAAACCTCTATATGAAAAGATCTCTAACAATCCCTCCCAAGTTCATCTTCCCAATTCAACCCCATCTCTCAATACCCATTTCATGTTCTAAATCGATCTCAACCCAAAACCCCATTTCCGCACAGTTCAACAGTTCCAATTCCTTCCGAGTTGCATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTCTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGAACGAACTAAATTTCAATCAAGTGAGTTCACTTTTCACCATTTCCTTTAATTCATCGATCCCATTTTCATTTTCTGAGTTCAATTTGATGAACGTTTTTGATTTTGTTGTTCATCAGCCAACTGGGTCTGTATCAGAGATGGTGCCACTGATCGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAAGACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAATAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGTAACTGCTTTGGATGCAACATCTAGCCTATATATTATGCATGAATATGATGTTATTCCTTAGATTTTAGGGTCATTTATCATCTGTGTTGCTCTGTTCTTGAAAGGAAAGGATTGATTTGAAGGAATCTCTCCTGAAATTTTTCTTGTTTATAGTTTTAATGGAATTATGTCTCCCAAATCCTCTTAGTTCCAGGTTTTATCTTAGAAAGTGGCCGTTCCTGAAGATAGGATTGTGAGGTTGATTACCATTTTTTTCTTCTCTTTTTTGCTGTTCTTTAGGAAATATGCTTTCATTTGATAATGGAGCTGTTGCTGCCGTTTGTTGAGTATGTTTAGATGGTAAATGATATGGGAAAGCCTTGGCATTGTAAGATGATGTATAGAGTTTCATGAAGTGAGTTATGTTTGTTCTTATTGTATAAATTGTTGGCTTATTCAAGTA

mRNA sequence

TCGGTAAAATAATGTATTTCTTACGGTTCAAAGGCTCACAGACCAGAATCACAGCTGATTAATGATGTCGGATGGCTTCGTTTTAAAGCAAAGAAATCCACTGATTCATATTTTTCACATAATCACATCTCTCACATTCATACTTAGCCGAAAGCCCATTTCAAAGCACCGAAGATTTCCCATTTTTTTTAACGTTAAATCAAAAGACATTCCGCCAATTCCATCAATTCCAGCAATGGGCTTCGCGTTTCACACGCTACCACCATCAAAATCTCTCCTCTAAACCCTTCATTTCCAAAACCTCTATATGAAAAGATCTCTAACAATCCCTCCCAAGTTCATCTTCCCAATTCAACCCCATCTCTCAATACCCATTTCATGTTCTAAATCGATCTCAACCCAAAACCCCATTTCCGCACAGTTCAACAGTTCCAATTCCTTCCGAGTTGCATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTCTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGAACGAACTAAATTTCAATCAACCAACTGGGTCTGTATCAGAGATGGTGCCACTGATCGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAAGACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAATAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGTAACTGCTTTGGATGCAACATCTAGCCTATATATTATGCATGAATATGATGTTATTCCTTAGATTTTAGGGTCATTTATCATCTGTGTTGCTCTGTTCTTGAAAGGAAAGGATTGATTTGAAGGAATCTCTCCTGAAATTTTTCTTGTTTATAGTTTTAATGGAATTATGTCTCCCAAATCCTCTTAGTTCCAGGTTTTATCTTAGAAAGTGGCCGTTCCTGAAGATAGGATTGTGAGGTTGATTACCATTTTTTTCTTCTCTTTTTTGCTGTTCTTTAGGAAATATGCTTTCATTTGATAATGGAGCTGTTGCTGCCGTTTGTTGAGTATGTTTAGATGGTAAATGATATGGGAAAGCCTTGGCATTGTAAGATGATGTATAGAGTTTCATGAAGTGAGTTATGTTTGTTCTTATTGTATAAATTGTTGGCTTATTCAAGTA

Coding sequence (CDS)

ATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTCTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGAACGAACTAAATTTCAATCAACCAACTGGGTCTGTATCAGAGATGGTGCCACTGATCGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAAGACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAATAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGTAACTGCTTTGGATGCAACATCTAG
BLAST of CmoCh11G009670 vs. TrEMBL
Match: E5GBK4_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-53
Identity = 97/113 (85.84%), Postives = 105/113 (92.92%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLG 60
           MMSS+GAGFS + LLFL VLA  NEL+F Q  GSV+EMVPLIEEGK+N+MEMNETRRRLG
Sbjct: 4   MMSSYGAGFSFLFLLFLTVLATGNELSFTQSNGSVAEMVPLIEEGKMNVMEMNETRRRLG 63

Query: 61  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           SFQ+CAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

BLAST of CmoCh11G009670 vs. TrEMBL
Match: A0A0A0LXU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659030 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.8e-53
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLG 60
           MMSS+GAGFS + LLFLAVLA  N+L+F Q  GSV+EMVPLIEEGK+N+MEMNETRRRLG
Sbjct: 4   MMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRLG 63

Query: 61  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           SFQ+CAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

BLAST of CmoCh11G009670 vs. TrEMBL
Match: M5W0E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 77/126 (61.11%), Postives = 87/126 (69.05%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGS-------------VSEMVPLIEEGKI 60
           MM +HG  FSL+ LLFLA +    E +     GS             V  +VPL+     
Sbjct: 49  MMPAHGVTFSLIFLLFLATVLTTTEASLTHANGSSAVAAAATDKKDKVEPLVPLVGAENF 108

Query: 61  NIMEMNETRRRLGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCN 114
             + MNETRRRLGSFQ+CA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CN
Sbjct: 109 KTLVMNETRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCN 168

BLAST of CmoCh11G009670 vs. TrEMBL
Match: A0A061EZN4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-37
Identity = 73/113 (64.60%), Postives = 86/113 (76.11%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLG 60
           M S++G    L+ LLF A +   NE          SEMVPL+EE  + +M  NE+RR+LG
Sbjct: 1   MKSAYGVTLFLLFLLFSAYVFNYNEATSMAQVNGSSEMVPLVEEKMMKMMMFNESRRKLG 60

Query: 61  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           SFQ+CA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CNCFGC++
Sbjct: 61  SFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 113

BLAST of CmoCh11G009670 vs. TrEMBL
Match: W9S703_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-37
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLA-VLAAENELNFNQPTGSVS------EMVPLIEEGKINIMEMN 60
           MM ++G  FSL+LLLFLA V+  + E +     GS +       +VPL+EEGK+ +M MN
Sbjct: 1   MMPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKMEMM-MN 60

Query: 61  ETRRRLGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           E+RR+LGSFQ+CA CTCCGGA+G+CLPSPCCYAINCNIP+RPFGFCSFTPK+CNCFGC++
Sbjct: 61  ESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 119

BLAST of CmoCh11G009670 vs. TAIR10
Match: AT1G65295.1 (AT1G65295.1 unknown protein)

HSP 1 Score: 147.9 bits (372), Expect = 3.8e-36
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 1

Query: 11  LVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLGSFQVCAPCTC 70
           L+LLLF   +++ ++ N   P    +EM+ ++  G+   M MNETRR+LGSFQ+C+ CTC
Sbjct: 14  LLLLLFSIFISSSHQANEVLPAEGDNEMM-MVPLGEEKFMVMNETRRKLGSFQICSVCTC 73

Query: 71  CGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           CGGAKGLCLPSPCCYAINCNIPNRPFG+CSFTPK+CNCFGC+I
Sbjct: 74  CGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115

BLAST of CmoCh11G009670 vs. TAIR10
Match: AT5G01015.1 (AT5G01015.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1

Query: 10  SLVLLLFLAVLAAENELNFNQPTGS---VSEMVPLIEEGKINIMEMNETRRRLGS-FQVC 69
           SL  ++FL +LA        Q  G+     EM P +E G    ME    RR+L +  ++C
Sbjct: 4   SLHSVIFLGLLATILVTTNGQGDGTGLNAEEMWP-VEVG----MEYRVWRRKLMTPLELC 63

Query: 70  APCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
             C CC      C   PCC+ INC +PN+PFG C+F PKSC+C  C+I
Sbjct: 64  LECKCCSSTT--CATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104

BLAST of CmoCh11G009670 vs. NCBI nr
Match: gi|659085991|ref|XP_008443711.1| (PREDICTED: uncharacterized protein LOC103487235 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 97/113 (85.84%), Postives = 105/113 (92.92%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLG 60
           MMSS+GAGFS + LLFL VLA  NEL+F Q  GSV+EMVPLIEEGK+N+MEMNETRRRLG
Sbjct: 4   MMSSYGAGFSFLFLLFLTVLATGNELSFTQSNGSVAEMVPLIEEGKMNVMEMNETRRRLG 63

Query: 61  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           SFQ+CAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

BLAST of CmoCh11G009670 vs. NCBI nr
Match: gi|449449623|ref|XP_004142564.1| (PREDICTED: uncharacterized protein LOC101221700 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.4e-53
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGSVSEMVPLIEEGKINIMEMNETRRRLG 60
           MMSS+GAGFS + LLFLAVLA  N+L+F Q  GSV+EMVPLIEEGK+N+MEMNETRRRLG
Sbjct: 4   MMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRLG 63

Query: 61  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           SFQ+CAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

BLAST of CmoCh11G009670 vs. NCBI nr
Match: gi|595830109|ref|XP_007206003.1| (hypothetical protein PRUPE_ppa012325mg [Prunus persica])

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 77/126 (61.11%), Postives = 87/126 (69.05%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLAVLAAENELNFNQPTGS-------------VSEMVPLIEEGKI 60
           MM +HG  FSL+ LLFLA +    E +     GS             V  +VPL+     
Sbjct: 49  MMPAHGVTFSLIFLLFLATVLTTTEASLTHANGSSAVAAAATDKKDKVEPLVPLVGAENF 108

Query: 61  NIMEMNETRRRLGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCN 114
             + MNETRRRLGSFQ+CA CTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPK+CN
Sbjct: 109 KTLVMNETRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCN 168

BLAST of CmoCh11G009670 vs. NCBI nr
Match: gi|720093146|ref|XP_010245965.1| (PREDICTED: uncharacterized protein LOC104589366 [Nelumbo nucifera])

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1

Query: 2   MSSHGAGFSLVLLLFLAVLAAENE----LNFNQPTGSVSEMVPLIEEGKINIMEMNETRR 61
           MS  G  FS + LLF A +   N+       +Q   + +EMVPLIE G +  M +NETRR
Sbjct: 1   MSGFGVVFSYLFLLFSATIITLNQGMSVHGLDQNNTAAAEMVPLIEPGTVKTMVLNETRR 60

Query: 62  RLGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           RLGSFQ+CA CTCCGG +GLCLPSPCCYAINCNIPNRPFGFCSFTPK+CNCFGCN+
Sbjct: 61  RLGSFQICALCTCCGGPRGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCNL 116

BLAST of CmoCh11G009670 vs. NCBI nr
Match: gi|703154914|ref|XP_010111066.1| (hypothetical protein L484_015121 [Morus notabilis])

HSP 1 Score: 161.4 bits (407), Expect = 9.3e-37
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 1

Query: 1   MMSSHGAGFSLVLLLFLA-VLAAENELNFNQPTGSVS------EMVPLIEEGKINIMEMN 60
           MM ++G  FSL+LLLFLA V+  + E +     GS +       +VPL+EEGK+ +M MN
Sbjct: 1   MMPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKMEMM-MN 60

Query: 61  ETRRRLGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 114
           E+RR+LGSFQ+CA CTCCGGA+G+CLPSPCCYAINCNIP+RPFGFCSFTPK+CNCFGC++
Sbjct: 61  ESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GBK4_CUCME2.9e-5385.84Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LXU3_CUCSA3.8e-5385.84Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659030 PE=4 SV=1[more]
M5W0E2_PRUPE1.3e-3761.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1[more]
A0A061EZN4_THECC6.5e-3764.60Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1[more]
W9S703_9ROSA6.5e-3763.33Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G65295.13.8e-3664.08 unknown protein[more]
AT5G01015.12.0e-1339.81 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659085991|ref|XP_008443711.1|4.2e-5385.84PREDICTED: uncharacterized protein LOC103487235 [Cucumis melo][more]
gi|449449623|ref|XP_004142564.1|5.4e-5385.84PREDICTED: uncharacterized protein LOC101221700 [Cucumis sativus][more]
gi|595830109|ref|XP_007206003.1|1.9e-3761.11hypothetical protein PRUPE_ppa012325mg [Prunus persica][more]
gi|720093146|ref|XP_010245965.1|3.2e-3764.66PREDICTED: uncharacterized protein LOC104589366 [Nelumbo nucifera][more]
gi|703154914|ref|XP_010111066.1|9.3e-3763.33hypothetical protein L484_015121 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G009670.1CmoCh11G009670.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33786FAMILY NOT NAMEDcoord: 12..113
score: 8.3
NoneNo IPR availablePANTHERPTHR33786:SF2SUBFAMILY NOT NAMEDcoord: 12..113
score: 8.3