Cucsa.356490 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356490
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCopia protein
Locationscaffold03577 : 1290490 .. 1294109 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCATTTGCATCCAGGGACCAAGAGCGTTTGTCATTAGAATCTATCACCTTTTCTTTGAATAGGATACTTAACAAGAATTCTCCCCCATGGTCTTCCATGGATGAAAATAGAGAACTTTGCATTGCAAATGCATCCCATTATCAAATTTTTTTCCATGAAGCACCTTTTCTAGAAACTCACATTCAACTCTATCAAAGCCTTTTTCTAAGTCGAGTTTGAGAATCCACCCTTTTTTATTCTTGGATCTGTAGTCTTTGACAACTTCATTAGCAATTAAAACTGGATTCATTATTTGCCTTCCTTCGATAAATGCACTTCATGTTGGAGCAATAATGCTTGGCATAACTCTTCTCAACCTCTCTGTGAGTGCTTTAGCTATTACTTTATAAACAATTGTGGTTAGACTTATGCACCTAAGGTCCTTTAACAACACTGTATCCTCCTTTTTCTGTATTAAACAAATAAAGTTTTTCTTAATACAAGAATTTAGCTTACTATTGCTGTAAAACTCTTCAAACAACTTTAAGAAATTCTCTCTTAATTGATCCCAGAAGTTTAGAATGAACTCTGGTGTAAAACCATCCGGCCTGAGGGCCTTATTTTACCCCAACACTTGAACAGCCCTTTTAATTTCAAGCAGGGAGAATTTCCCTTAATACAGACAATTGTGCGTGCAAACAAGAAAGCCTAGGCTAGAAGCAAAGCAGCGAGACAATGAGTCACTTAAAGAGTCATCCCTCTCTCTCGGAATGAGTCACTGAACATAATATCTAAAAGAGTTCCAGTGATCAATGAACATCCATAAAAGAAATTAGGGAATGAGTTCTCATAAGTACTATTCTCGTTGTAATTGCTTTATTGTATTACATAGTAAGAATTATAGAATTTGGGTGTACAAGTTGTAACTTATTACACAGAAACCTAATAAAATTAAATAATGGTATATCAAACATTTTTTAGTTTACCTGCAAATTGTTTTGTGTCTCTTCTATGCAGCCTCTTTGTGAGAAAGGTGTTGAGACCGATGCTCCTTCCTGCAGTATCCAAGTTGACATTAAACCCAAACATGAGGTTAACCTATCAGTAAAGGTATGCTAATTGATGTGCCTATTTGAAGCTGGATCGGAGAACCATTTTTTTCATTATTTGAAGTCTGCTACTATTCAGCAATTTTTCCTGTATATTATTTGCAGGTGATGCTGAATCCATTAGTAGTTACTTATGATTCCAAGTTTTTTCTTTGTCTGTCAGAGTTTTTTGATGAACTTAAGTCCTTCGAATCTCTTCACAGAAGGGTAAGGCTGCTTTCTTCTATTGTTTATTCTGTTATAGGCTGTTTACTTTAGTTTGATTCCTTTTAATTTGGGGTTTTTAGCCTTTATCTCCCTCCTTTTTTGGAGTTTATATCTTTTGAGCATTAGTATTTTTATTATATCAAGAATTTGACCAAGGTACCCCAATTTAACTTAATCCTATTGCATCAGTTAAAATGATTTTTTATTTCTGTGACAAGTTTGTTTAGAGCTGTTAGTAGGAATATGTGACTTAGGCCTACATATGTCCATTTTATGTCTAATACTATTAATTGATTGTTTAGAGCTGTTAGCAGTTGGTTGTGTTATTCAATATTCAAAAGAAATCTACTATTAATTGATGATTTCAAATTTTTAACAACATGGTAGCTCTAAATTATTCTTTTAGATATTTTTAAGCCTCTCTGTCTGACTAGTTTATTTTTATTTTTTTGAAATGTAAACAGAACTTTCAAATCAATGAGAAGAGAATAAATCTCAAGATACAGCATTAGGGTTTTTTCTAGTCGCTTTGATAGGATGTGGAGTAGTCTTTCTTTTTCTTTGAACTGTTGTCTTGGACTAGTTTTTCTTCTCACTGGAGGGTTTTCTTTTAATTAATTAATTATCATTAATATGATATTACTATTTTTAGAGTGGAAACTGAGACCACTTCATTGATAGATTTCAAAACAATTCTAACTTTGAGATTACAAAAACATCTCCAATGTGTCAAGACTCATGAAGGTCTGTAGACTATAGTTATAATCAGGAGAAAGACGTAGATGTATTGAATGTATGAACAATTTCTGTGAGAGATGTTAAAAGCACCGATCCATGTAGCTGTGATGTTAGTTTTCATATATCCACTCAATGGGCTTGTAAATTGATTAAAAAGCATTTTTATTTGTAGGTTCTTTCAACTCTAAATGGAATTGAAAATTCCAAAGCTCGATTGCTATCCAAGGCTCAGTAAGTTTAACTTGTATAATTGTTGCACGATTTGGTAATTCAGGCATTAATGTAGTCTATATCTATTCCATCTTATTTACTCCATGTGCGCACTGTCATTGTTTGTTGTTTCTGATCCTCCAGATGCATAATGTCAGGATATAAGAAAGTGATGTGGGACATTACTGTCAATGGCATTACAGTCCACGTCCCTTGGCGTACACCTTCACAACAAAATAGCTTGGTAAGTGTCCTTGTTTATGCTGCAAGAACATGTATTTTTTTTTCGGGAATGCACTTTTAGGCGTTTCCATTGAAACACACCTGAAGTTTACTATGTTGGGTGGTATGATTATTTTTGTCCTTATTTTTTAGGACTTTGGTTTAGTTTTTATTCTAGTAAATGTTTATTCTATTATTTTCTAATTAGCTGTAGGCTCGTTATTATGATATTATTGTGATAGATTTCTTTTTGCGATGAATCTCACCTCCACATGAGGTGACCTTATTTTTATTTTTGGAAATCGAAAAAGATAAAGTTTTCTTGGAATTAAATGTCATGATCTGTTCTATAGTGTACAGCTGTGTCCTTAAGTTATATGGAAACAACTCAGAGTTAAAAGTGCTTCCCTTGAGTTGTCAAAAGGACACGACACAAAACTTACAATTGCTCCAATATTAGGGTCTTCTTTAATAAAATGCTTGCCATGCATATTTTCCATGCTCAAATCAGTTTGGGTTTTTGATGGTTCGTTTAGCGCCAATGTGCGCCAATTACTGAGGGGGCCTTATTTATCAAAAAAGCCTTTTCTAATTTGGGTTAATTTGATAAAAGCGCTTCTAGCTAAGATTTGGTTTGAACGTAACCAACGCATCTTCTATGATAAAAAAAGGGATTGGGTTGACATCGTAGAGATTTCTAAAAGAAACGCAGCAACTTGGTGTTCTTCAAATGCAGAATTCAATTGGACCACCTTCATCTGATGAGATTCAATCTAGTTTCCCCGATCGCCAATTTGGATGATTTTTTCCTTTTCTTATTTTGCTCTTAGTATAATTCTCTTGTACTTTGAGCATTAGTCTCATTTATTTATTATTAATAAAGAGGCTTGTTTCTGTTTAAAAAAAAACAAATCTATTGTGCTAAGAAGGCTACCATCACCCTAGCTCATTATGCAATCTTGCATGATAAGATGAAACGTATCGAAGTTGACAAACATTTCATAAAAGAGAAGATTGATGCAGACGTAATATGCATATTATTTTTCAGCGACTAAACAGATGGATGATATGTTAACTAAAAGTCTTTCGAAAAGGCAATTTGATAAACTTATCGATATGCTGGCTATGGAAGATATCTACAAACCATTTTGA

mRNA sequence

GATTCATTTGCATCCAGGGACCAAGAGCGTTTGTCATTAGAATCTATCACCTTTTCTTTGAATAGGATACTTAACAAGAATTCTCccccatggtcttccatggatgaaaatagagaactttgcattgcaaatgcatcccattatcaaatttttttccatgaagcaccttttctagaaactcacattcaactctatcaaagcctttttctaagtcgaCCTCTTTGTGAGAAAGGTGTTGAGACCGATGCTCCTTCCTGCAGTATCCAAGTTGACATTAAACCCAAACATGAGGTTAACCTATCAGTAAAGGTGATGCTGAATCCATTAGTAGTTACTTATGATTCCAAGTTTTTTCTTTGTCTGTCAGAGTTTTTTGATGAACTTAAGTCCTTCGAATCTCTTCACAGAAGGgctaccatcaccctagctcattatgcaatcttgcatgataagatgaaacgtatcgaagttgacaaacatttcataaaagagaagattgatgcagacatggatgatatgttaactaaaagtctttcgaaaaggcaatttgataaacttatcgatatgctggctatggaagatatctacaaaccattttga

Coding sequence (CDS)

GATTCATTTGCATCCAGGGACCAAGAGCGTTTGTCATTAGAATCTATCACCTTTTCTTTGAATAGGATACTTAACAAGAATTCTCCCCCATGGTCTTCCATGGATGAAAATAGAGAACTTTGCATTGCAAATGCATCCCATTATCAAATTTTTTTCCATGAAGCACCTTTTCTAGAAACTCACATTCAACTCTATCAAAGCCTTTTTCTAAGTCGACCTCTTTGTGAGAAAGGTGTTGAGACCGATGCTCCTTCCTGCAGTATCCAAGTTGACATTAAACCCAAACATGAGGTTAACCTATCAGTAAAGGTGATGCTGAATCCATTAGTAGTTACTTATGATTCCAAGTTTTTTCTTTGTCTGTCAGAGTTTTTTGATGAACTTAAGTCCTTCGAATCTCTTCACAGAAGGGCTACCATCACCCTAGCTCATTATGCAATCTTGCATGATAAGATGAAACGTATCGAAGTTGACAAACATTTCATAAAAGAGAAGATTGATGCAGACATGGATGATATGTTAACTAAAAGTCTTTCGAAAAGGCAATTTGATAAACTTATCGATATGCTGGCTATGGAAGATATCTACAAACCATTTTGA

Protein sequence

DSFASRDQERLSLESITFSLNRILNKNSPPWSSMDENRELCIANASHYQIFFHEAPFLETHIQLYQSLFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRRATITLAHYAILHDKMKRIEVDKHFIKEKIDADMDDMLTKSLSKRQFDKLIDMLAMEDIYKPF*
Homology
[Close]
BLAST of Cucsa.356490 vs. TrEMBL
Match: A0A0A0M027_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.2e-31
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 68  LFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 127
           +FL  PLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE
Sbjct: 213 IFLKMPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 272

Query: 128 LKSFESLHRRATITL 143
           LKSFESLHRR   TL
Sbjct: 273 LKSFESLHRRVLSTL 287

[Close]
BLAST of Cucsa.356490 vs. TrEMBL
Match: A5BRK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026977 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 137 RATITLAHYAILHDKMKRIEVDKHFIKEKI------------DADMDDMLTKSLSKRQFD 196
           +A I +AH  ILHD+ K +EVDKHF+KEK+            D  + D+LTK L K+QFD
Sbjct: 569 KAAIAIAHNPILHDRTKHVEVDKHFMKEKLEEGLICTSYIPTDEQVADILTKGLPKKQFD 628

Query: 197 KLIDMLAMEDIYKP 199
           KL+  LAMEDI+KP
Sbjct: 629 KLVSKLAMEDIFKP 642

[Close]
BLAST of Cucsa.356490 vs. TrEMBL
Match: A5B0T2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018707 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 137 RATITLAHYAILHDKMKRIEVDKHFIKEKID------------ADMDDMLTKSLSKRQFD 196
           +ATI++AH  +LHD+ K +EVDKHFIKEKID              + D+ TK L KRQFD
Sbjct: 437 KATISVAHNPVLHDRTKHVEVDKHFIKEKIDNRLVCMTYIPTEEQVADVFTKGLHKRQFD 496

Query: 197 KLIDMLAMEDIYKP 199
            L+  LAMEDI+KP
Sbjct: 497 FLVGKLAMEDIFKP 510

[Close]
BLAST of Cucsa.356490 vs. TrEMBL
Match: A5B9C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020293 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-11
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 137  RATITLAHYAILHDKMKRIEVDKHFIKEKID------------ADMDDMLTKSLSKRQFD 196
            +ATI++AH  ILHD+ K +EVDKHFIKEKID              + D++TK + KRQFD
Sbjct: 1342 KATISVAHNPILHDRTKHVEVDKHFIKEKIDNGLVCMTYIPIEEQVVDVITKGVHKRQFD 1401

Query: 197  KLIDMLAMEDIYKP 199
             L+  LAMEDI+KP
Sbjct: 1402 FLVGKLAMEDIFKP 1415

[Close]
BLAST of Cucsa.356490 vs. TrEMBL
Match: A5AHZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035985 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 137  RATITLAHYAILHDKMKRIEVDKHFIKEKID------------ADMDDMLTKSLSKRQFD 196
            +ATI +AH  +LHD+ K +EVDKHFIKEKID              + D+ TK L KRQFD
Sbjct: 1031 KATILVAHNPVLHDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVIDVFTKGLQKRQFD 1090

Query: 197  KLIDMLAMEDIYKP 199
             L+  LAMEDI+KP
Sbjct: 1091 FLVGKLAMEDIFKP 1104

[Close]
BLAST of Cucsa.356490 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 68  LFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 127
           +FL  PLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE
Sbjct: 557 IFLKMPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 616

Query: 128 LKSFESLHRRATITL 143
           LKSFESLHRR   TL
Sbjct: 617 LKSFESLHRRVLSTL 631

[Close]
BLAST of Cucsa.356490 vs. NCBI nr
Match: gi|700211553|gb|KGN66649.1| (hypothetical protein Csa_1G652810 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 68  LFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 127
           +FL  PLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE
Sbjct: 213 IFLKMPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 272

Query: 128 LKSFESLHRRATITL 143
           LKSFESLHRR   TL
Sbjct: 273 LKSFESLHRRVLSTL 287

[Close]
BLAST of Cucsa.356490 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 68  LFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 127
           +FL  PLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE
Sbjct: 557 IFLKMPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 616

Query: 128 LKSFESLHRRATITL 143
           LKSFESLHRR   TL
Sbjct: 617 LKSFESLHRRVLSTL 631

[Close]
BLAST of Cucsa.356490 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 68  LFLSRPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDE 127
           +FL  PLCEKGVETDAPSCSIQVD+ PKHEVNLSVKVMLNPLVVTYDSKFFL LSEFFDE
Sbjct: 557 IFLKMPLCEKGVETDAPSCSIQVDVSPKHEVNLSVKVMLNPLVVTYDSKFFLRLSEFFDE 616

Query: 128 LKSFESLHRRATITL 143
           LKSFESL RR   TL
Sbjct: 617 LKSFESLDRRVLSTL 631

[Close]
BLAST of Cucsa.356490 vs. NCBI nr
Match: gi|147775003|emb|CAN61703.1| (hypothetical protein VITISV_026977 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 137 RATITLAHYAILHDKMKRIEVDKHFIKEKI------------DADMDDMLTKSLSKRQFD 196
           +A I +AH  ILHD+ K +EVDKHF+KEK+            D  + D+LTK L K+QFD
Sbjct: 569 KAAIAIAHNPILHDRTKHVEVDKHFMKEKLEEGLICTSYIPTDEQVADILTKGLPKKQFD 628

Query: 197 KLIDMLAMEDIYKP 199
           KL+  LAMEDI+KP
Sbjct: 629 KLVSKLAMEDIFKP 642

The following BLAST results are available for this feature:
BLAST of Cucsa.356490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M027_CUCSA7.2e-3192.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1[more]
A5BRK7_VITVI3.7e-1151.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026977 PE=4 SV=1[more]
A5B0T2_VITVI4.9e-1152.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018707 PE=4 SV=1[more]
A5B9C7_VITVI6.4e-1152.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020293 PE=4 SV=1[more]
A5AHZ7_VITVI8.3e-1152.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035985 PE=4 SV=1[more]
BLAST of Cucsa.356490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664067|ref|XP_011660210.1|1.0e-3092.00PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus][more]
gi|700211553|gb|KGN66649.1|1.0e-3092.00hypothetical protein Csa_1G652810 [Cucumis sativus][more]
gi|778664064|ref|XP_011660209.1|1.0e-3092.00PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus][more]
gi|659085896|ref|XP_008443663.1|1.4e-2786.67PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel... [more]
gi|147775003|emb|CAN61703.1|5.3e-1151.35hypothetical protein VITISV_026977 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356490.1Cucsa.356490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.356490Cla009519Watermelon (97103) v1cgywmB638
Cucsa.356490MELO3C010033.2Melon (DHL92) v3.6.1cgymedB575
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356490Cucumber (Chinese Long) v3cgycucB542
Cucsa.356490Watermelon (97103) v2cgywmbB608
Cucsa.356490Wax gourdcgywgoB711
Cucsa.356490Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356490Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356490Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356490Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356490Wild cucumber (PI 183967)cgycpiB528
Cucsa.356490Cucumber (Chinese Long) v2cgycuB500
Cucsa.356490Melon (DHL92) v3.5.1cgymeB574
Cucsa.356490Watermelon (Charleston Gray)cgywcgB605
Cucsa.356490Watermelon (Charleston Gray)cgywcgB607
Cucsa.356490Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356490Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356490Bottle gourd (USVL1VR-Ls)cgylsiB573
Cucsa.356490Silver-seed gourdcarcgyB0613
Cucsa.356490Silver-seed gourdcarcgyB1085