Cla009519 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009519
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 15206484 .. 15210601 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGACACTGGCAGGATTAGAAATCATTTTTGAAACATCATTATACTTCAAAACTTTTGTGAGAGCTTACTTTGTCTATGAAGGGGAGCTTAAACCAGATCTTAGATCCAATGAAATCCTCATACAAGGTAGTCATGTATTCCCAAATTGTAAGTTAACCTCTTTTACAAAGTCCCATAGGAATATTGATCAACTTCCTTCCATTAGAGGGCATAAGCGAGTTGTACCATATTCATCTCTATGTTGTAAAAACGAAATATGAATGATAAATCCATTAGAAAGCATTCAAACCATTGCAAAATAGAGAGTAGGAGAAGGATTACTATGTTATTTCCCATATTTTATGTGAAGAACAATACATATTCGAACTAAATGCTACCTAACGTGTTGTTTTTTCGAACAAGAGAGAAACCTTTTCATTGATGAAATGAAAAGAGACTAATGCTCAAGGGAAACAAACTTCACAAGGGAGTGAAGTACTAGTAACAGCTAAGAAATACACTGCTAGAAATAAATAAGAAAACAAATGGATAAAAATAAGGAACAAGGCTCTAATAAGTATCAATAAAGACAGCTCAATTTAAATTAGTATCTTGAAGAGAGTATCCCCCAAAAGATTTGGATAAGGAGCACCAAAGTTAGGCATTACGACGGGCTGAATCAGAGACGTCCACCCAATCACTCACCTTGTTTGTTGGAAGTCTGCTTCAAAAACACAATTTGATGGGAGACTAGGCATTGGCGGACTGGCCAAGAAAAATGTGGCCATGCTCGCAAAATGGGTTGGAGATTTCTCAATGAACCAGGCTCCTTGTGGAAGTTGGTGGTCACTAGCATTCATGGTTCACATGATTTTGGTTCACAGACAATGCTACATTTAGATCCCCTCTTGGTTGATAACTTGAATGTGTTGTTTTGCCACCTATTGGAGGTAGAATGAGGTTACATTTCTTCAAAGCATGTTGAGGTAGGAGATGTCTTGTCATTGGAGCTTGTCAAAGATAACCATCTTCACAATAGTAATGCAGGAGTGGTACTTACGCAGAGTTCAGATGCTTCTACCCTTTGGGTGAGGAAAGAAAAAGAGGTAGTGGAATTGAACATCAATTCTCTGGTAATTTCAAGTTAGACATTTAGCTCATAACTCTTGGTTGGACATTCATGATACTTTGGAGTAGATAAAACGTTAGTGAAATTGAGTGATGATTTTACTAATTTGGATTTTGATGGTAAATGGAGGAAAATTGGTAATTTCCACGTAAAAGACTACTAAGCTCCTATAATTACATATATGCTATAACACTCCCCCTCAAGCTGAAGCATATATGTTAATCATGCTCAATTTGTTGCTTAGGTACTCTATTTGAACTCCATTTAAAGCTTTTGTGAAAATATCTCTTAATTGCTCTCTAGTCTTCACATATCTAGTAGACACAACTGGACACAAACCCAAAATATCAGAATGAACTAACTTGAAGGGAGAATTTGCCTGTTTATCAACTCTAGGACTGGGGCTAAAACATTAAATTTGGCAAACTAACATGAGTCAAAATTTAATGAAGACAAGTTATGAAATTGAGGACAACGGGCATCCAAAGGAGAAACAACTCCAGAACAAGCAACGATTGTTGATGTTGATACTTGGTGATAAAAAACATAAAGTCCTCTAGATTTGTCCTTCCCCAATAATCCACTTCACGACAAGATCCTGAAACAAGCAAATAGCCAGGATAAAATGAGACACAACAATTATGGTCACAAGTGATTTGACTAATAGAGATCAAGTTAAATGAAAATTGTGGTAAATGTAGGACAGATGACAGAGAAAGAGATGGGATGAGATTTATAGGGCCAAATCTAAGAACAAAAGAATTTGATCTATATGGTAAGGTAACATTGGGAATGGATGTAGATGACAAAATTGTAGGAAATAAGTTGGGATTACCTGTCATATGAGCAGTAGAGGATGAAAGGAAACAATGATTTATGTTACCTGAATTAGCAATGGTTGTAATAGGAGTGAGTGTGGATGATGAAAATGCTTTAGATGATTTTTGGTACTGCAGAAATTCATTGATTTCAGTTGCAGAATTAACAAATAGCTTCTTAGATGAACCATGGATGAATGGGGCCCTCGATTGAACCACATTAGACATCATTACAAAACAACTTCGAACTCAAGCAGCTTATGACCACAATATCCTCACACAGCTGAAAGAAGCAAGAACCAATACCAAAGGCTTCAAAAACAAAACTGCATGGTAAAAAACAGATTTGAACTGCAGAAGAAAAAATCAACTACTGAAACTCATAGATGTGCCGGAAAATACAAACCGAGACAAACCTTGGGGATGGGGCAAAAAAACGGACGATCAACGCGCCCACATGCATCGGTGCGTGTGACGGAGCGCGGCAGAATCCGACGGTGTGTACCTCATGCGCTGAAGATTTTCTGGCCAAATTCTGGCGTGTATACTACTATAGCACATTGCCGGTTGATATTTTGGAAGAAGCTTGTGTGCGGTTCATTACTTCCTCAGCAAGCTTGTGTGCGGTTGATTATTTTGCATTTATTTTCTTGAGGGAAGGGAATTTGCTTTTGCATTTCTGTCGAAATCATTGAGATAGAAATGTGTTCCAACTCCATAGAATTCCGGTTAGAAATGGGATTTTATCTTTACTGCATGAATAATTTTACAACTAAATCTAGTTTTACATTGCCTTTGCAATAGTCTATAACTTATTGATATAATATTTTGCTTTGTATTAAAAAAGAATCTAATGTCAATTTTATGGTAAGGTCAGTTAACCAAATTACAAGATAGATGTTAAATGTTTCCTTAGAGTTAGAGGAGATAGGTGTTAAATCTTAACAAACTGGTTACTTGGTTAGTTTGAATGACTTGTCATAGATAAGATTATACATCATTAAACAGAGTAACATTTCTTAAAATGGATATTAATTTTTATTTGTGTGATTGTTATGCAATCCGTTGGAATTGGTTTATTGTTTTATATAGTAAGAATTACAGAATTTGGGTGTACGAGTTATAACTTATTACACAGAAACCTAATAAAATTACATAAATGGAATATCACCTGTGCATTGTTTTTGTGTCTTCTATGCAGCCTCTATGTGAGAAAGATGTTAAGACACATGCTCCTTCCTGTAGTATCCAAGTTGACGTTTCATCCAAACATGAGGTTAACCTATCAGTAAAGGTGTGTTACTTTGATATGTCTATTTGAAGCTGAAATAAAGAACCACTCTTTTTTGTTCTCTTTGAAGTTCGCTACTATTCAGTGATTTTTCCTTCATGTTATTTGCAGGTGATGCTGAATCCATTAGAAGTTACTTACGATTCCAAGTTTTTTCTTCATTTGTCAGAGTTTTTTGATGAATTCAAGTCCTTTGAATCTCTTCACAGAAGGGTAAGGCTGTTTGCTTTTCTTGTTTATTCTGTTTTAGGCTGTTTACTTTAGTTTGATTCCTTTTGGTTTCAGTTTTTTAACTTTGTTTTTAGCTTTTATCTCACTCCTTGCTTGGAGTTTATATATTTTGAGCATTAATCTCTTTCCATTATATCAAAGATTTGACCAAGATACTCCAATCTACTCTAATCCTACTACATTGATTACTCAAACGGTTTGCTATTTTTGTGACTAGTTTGTTTAGACCTATTAGTTGGAATATGTGACTTAGGCCTACCTATACATATTGATCAACTATCAATTCATTTGCAAGAGTTCAAGAATGGATTGATTTCATATACAGAAGAAAAAAACAAAGGAATCATGGGTGGAAAATTTTCAAATAGAAAATCTTGAACATTGAAGAAAAACAAGAATGAAGATGTTGATTTGGAAATAGTCTCAAGTGAAGAAGAAAAATTCAACGAAGAAAATGGAAAAGAAGTATCGAACACCGAGCAAGAATCGAACAAGAACAATGACACACTGATTGTGGTGGAATTGAATCACCAAACCATCAAAGAACTTGAAGCGAATGATAAAGACATGATTCTTGAACGATTCTCTTTGGAAGGTGGTTTTTTAGTGATTGGGAATGAGCTTGAAGGAAGCATCTTCTGTGGGTGTATGTCTGATGTCTAA

mRNA sequence

ATGGAACCGACACTGGCAGGATTAGAAATCATTTTTGAAACATCATTATACTTCAAAACTTTTGTGAGAGCTTACTTTGTCTATGAAGGGGAGCTTAAACCAGATCTTAGATCCAATGAAATCCTCATACAAGGTAGTCATGTATTCCCAAATTATGTTAAGACACATGCTCCTTCCTGTAGTATCCAAGTTGACGTTTCATCCAAACATGAGGTTAACCTATCAGTAAAGGTGATGCTGAATCCATTAGAAGTTACTTACGATTCCAAGTTTTTTCTTCATTTGTCAGAGTTTTTTGATGAATTCAAGTCCTTTGAATCTCTTCACAGAAGGAAAAACAAGAATGAAGATGTTGATTTGGAAATAGTCTCAAGTGAAGAAGAAAAATTCAACGAAGAAAATGGAAAAGAAGTATCGAACACCGAGCAAGAATCGAACAAGAACAATGACACACTGATTGTGGTGGAATTGAATCACCAAACCATCAAAGAACTTGAAGCGAATGATAAAGACATGATTCTTGAACGATTCTCTTTGGAAGGTGGTTTTTTAGTGATTGGGAATGAGCTTGAAGGAAGCATCTTCTGTGGGTGTATGTCTGATGTCTAA

Coding sequence (CDS)

ATGGAACCGACACTGGCAGGATTAGAAATCATTTTTGAAACATCATTATACTTCAAAACTTTTGTGAGAGCTTACTTTGTCTATGAAGGGGAGCTTAAACCAGATCTTAGATCCAATGAAATCCTCATACAAGGTAGTCATGTATTCCCAAATTATGTTAAGACACATGCTCCTTCCTGTAGTATCCAAGTTGACGTTTCATCCAAACATGAGGTTAACCTATCAGTAAAGGTGATGCTGAATCCATTAGAAGTTACTTACGATTCCAAGTTTTTTCTTCATTTGTCAGAGTTTTTTGATGAATTCAAGTCCTTTGAATCTCTTCACAGAAGGAAAAACAAGAATGAAGATGTTGATTTGGAAATAGTCTCAAGTGAAGAAGAAAAATTCAACGAAGAAAATGGAAAAGAAGTATCGAACACCGAGCAAGAATCGAACAAGAACAATGACACACTGATTGTGGTGGAATTGAATCACCAAACCATCAAAGAACTTGAAGCGAATGATAAAGACATGATTCTTGAACGATTCTCTTTGGAAGGTGGTTTTTTAGTGATTGGGAATGAGCTTGAAGGAAGCATCTTCTGTGGGTGTATGTCTGATGTCTAA

Protein sequence

MEPTLAGLEIIFETSLYFKTFVRAYFVYEGELKPDLRSNEILIQGSHVFPNYVKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRRKNKNEDVDLEIVSSEEEKFNEENGKEVSNTEQESNKNNDTLIVVELNHQTIKELEANDKDMILERFSLEGGFLVIGNELEGSIFCGCMSDV

Homology

[Close]

BLAST of Cla009519 vs. TrEMBL
Match: A0A0A0M027_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 53  VKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR 112
           V+T APSCSIQVD+  KHEVNLSVKVMLNPL VTYDSKFFL LSEFFDE KSFESLHRR
Sbjct: 224 VETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRR 282

[Close]

BLAST of Cla009519 vs. TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 62  IQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRRK----NKNED 121
           I+VDVS   EV LSVKVML PLEV+YD +FFL+  EFF+  KS E   +R     N+ +D
Sbjct: 579 IEVDVSPNREVELSVKVMLQPLEVSYDVEFFLNFMEFFNVLKSIEFQQKRVLWSFNEFKD 638

Query: 122 VDLEIVSSEE 128
           V   ++S  E
Sbjct: 639 VKTRLLSKSE 648

[Close]

BLAST of Cla009519 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 51  NYVKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHR 110
           N++++  PS  +QVD S  HEV  SVK  L P+EVT D   FL+  EFF  F SFES H+
Sbjct: 438 NFMESEHPSLKLQVDTSPSHEVEFSVKGFLEPVEVTCDVGCFLNCIEFFGVFSSFESHHQ 497

Query: 111 RK 113
           R+
Sbjct: 498 RR 499

[Close]

BLAST of Cla009519 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 53  VKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR 112
           V+T APSCSIQVD+  KHEVNLSVKVMLNPL VTYDSKFFL LSEFFDE KSFESLHRR
Sbjct: 568 VETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRR 626

[Close]

BLAST of Cla009519 vs. NCBI nr
Match: gi|700211553|gb|KGN66649.1| (hypothetical protein Csa_1G652810 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 53  VKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR 112
           V+T APSCSIQVD+  KHEVNLSVKVMLNPL VTYDSKFFL LSEFFDE KSFESLHRR
Sbjct: 224 VETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRR 282

[Close]

BLAST of Cla009519 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 53  VKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR 112
           V+T APSCSIQVD+  KHEVNLSVKVMLNPL VTYDSKFFL LSEFFDE KSFESLHRR
Sbjct: 568 VETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRR 626

[Close]

BLAST of Cla009519 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 53  VKTHAPSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR 112
           V+T APSCSIQVDVS KHEVNLSVKVMLNPL VTYDSKFFL LSEFFDE KSFESL RR
Sbjct: 568 VETDAPSCSIQVDVSPKHEVNLSVKVMLNPLVVTYDSKFFLRLSEFFDELKSFESLDRR 626

[Close]

BLAST of Cla009519 vs. NCBI nr
Match: gi|1009177509|ref|XP_015870011.1| (PREDICTED: vacuolar protein sorting-associated protein 13A-like, partial [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 58  PSCSIQVDVSSKHEVNLSVKVMLNPLEVTYDSKFFLHLSEFFDEFKSFESLHRR----KN 117
           PSCS+QVD+S  H V L+VK ML PLEVT D+ FF++  EFF    S ES H R     N
Sbjct: 477 PSCSVQVDISPNHVVELAVKAMLQPLEVTCDADFFVNCMEFFGVLNSSESQHERVLASLN 536

Query: 118 KNEDVDLEIVSSEE 128
           + E+VD+ ++S  E
Sbjct: 537 RIENVDVRLLSKAE 550

The following BLAST results are available for this feature:

BLAST of Cla009519 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M027_CUCSA	2.9e-19	86.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1	[more]
B9RXC4_RICCO	4.3e-07	50.00	Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCO...	[more]
W9QCI9_9ROSA	5.6e-07	50.00	Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L...	[more]

BLAST of Cla009519 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664064\|ref\|XP_011660209.1\|	4.1e-19	86.44	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|700211553\|gb\|KGN66649.1\|	4.1e-19	86.44	hypothetical protein Csa_1G652810 [Cucumis sativus]	[more]
gi\|778664067\|ref\|XP_011660210.1\|	4.1e-19	86.44	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|659085896\|ref\|XP_008443663.1\|	5.4e-19	88.14	PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel...	[more]
gi\|1009177509\|ref\|XP_015870011.1\|	1.7e-09	50.00	PREDICTED: vacuolar protein sorting-associated protein 13A-like, partial [Ziziph...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009519	Cla009519.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009519	Cucsa.356490	Cucumber (Gy14) v1	cgywmB638

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009519	Cucurbita moschata (Rifu)	cmowmB043
Cla009519	Cucurbita moschata (Rifu)	cmowmB084
Cla009519	Melon (DHL92) v3.5.1	mewmB263
Cla009519	Watermelon (Charleston Gray)	wcgwmB225
Cla009519	Cucumber (Chinese Long) v2	cuwmB011
Cla009519	Cucurbita pepo (Zucchini)	cpewmB006
Cla009519	Cucurbita pepo (Zucchini)	cpewmB350
Cla009519	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009519	Cucumber (Gy14) v2	cgybwmB013
Cla009519	Melon (DHL92) v3.6.1	medwmB254
Cla009519	Silver-seed gourd	carwmB0531
Cla009519	Silver-seed gourd	carwmB0970
Cla009519	Cucumber (Chinese Long) v3	cucwmB016
Cla009519	Watermelon (97103) v2	wmwmbB126
Cla009519	Wax gourd	wgowmB661
Cla009519	Cucurbita maxima (Rimu)	cmawmB051
Cla009519	Cucurbita maxima (Rimu)	cmawmB093