Cucsa.348630 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.348630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-binding region-containing protein, putative
Locationscaffold03487 : 78365 .. 80854 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAaGAAAAAACAAAAaCCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTttGTGGTTCTCTCTCTATTTTTGTTTTtCCCTtATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCTTTTTCTTTTCCCTTCTTCTTGTCAAAATGGGGATTTTGATTTTGATTTTGATTTCTGGGATTTGATTGATTTCTTTTTGTTTTTAGGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTTCTTCTTGATTCTTTTTCATCTGTACCCTTTTTCTTTGTTAACTAAATGCTTTGATCTCTTCAATGGATTATAAAATTTCCCACATGCAATGTGTTTGTTTTTTtCCATTGCTTTCTTTGAATTCTCACCTTCAATGGAGGAGGTTGAATCTGCATTTTGAAGGACATTTTTTTGTCTTTTTGGCTGTGAAACATATGAAATCTAAAACAAACATAAGGGGAGTAATATTTTCTCAAAAGTAACCACAAAGTTTGTGGAACAAATTTGTAGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAAAACAAGAATTATAAATGGGATCAAACAAGACCCAATTTTCCCATTATCCCCTTTTATCGATTAATTAATATAATACTGTCCTTTTTGTTTTTtCTTTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTGTGTTTTTATGTCTATATGAGTGTTGTTTCTTTTTGGTTTGATGTTGTTTTGTGTTTGTGATCTTCTTGGTGGAATTGATTTTGATTTAAGCATTGTGTTTTCGATGCAGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGAAATATAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTTGAGAATTGGTGTCTGAAGAATGTCATTTTGATGTTGGTTTCAAAAGTGGTTTGGAGATTTATGTGAAAAATGTAACAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGgCAAGTTtCTTAAGTCGTGTGATTCGATAAGAAGAAAAaGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAG

mRNA sequence

GTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAAGAAAAAACAAAAACCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTTTGTGGTTCTCTCTCTATTTTTGTTTTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGGCAAGTTTCTTAAGTCGTGTGATTCGATAAGAAGAAAAAGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAG

Coding sequence (CDS)

ATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGA

Protein sequence

MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG*
Homology
[Close]
BLAST of Cucsa.348630 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-31
Identity = 91/234 (38.89%), Postives = 117/234 (50.00%), Query Frame = 1 

Query: 16  SSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYG 75
           ++S ++ G + DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 76  FVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT---PQHGVGGRFRGASGI 135
           FVTFKD  AA RAC++ +P+I+GRRANCNLASLG      PT   PQ G     R     
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR----- 121

Query: 136 VTPPAYHVSSSSYI--------HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQF 195
            TPP     S  Y         HQ  +  + P  GY  A  + +  +     G  GG   
Sbjct: 122 ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFN-QKVGYVGGTYM 181

Query: 196 SPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGM------QYPHLMQYPYLPQQ 233
           + YY+      P    Q    YY     G G  M        P    YPY   Q
Sbjct: 182 NGYYAQ---MQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQ 226

[Close]
BLAST of Cucsa.348630 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.2e-29
Identity = 86/215 (40.00%), Postives = 115/215 (53.49%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGL 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGMQYP 222
           +  A    + YPY A        ++ GYG+ +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP 200

[Close]
BLAST of Cucsa.348630 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-28
Identity = 86/202 (42.57%), Postives = 109/202 (53.96%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYI 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G      + I  P  Y + +    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRVMQPGFTFGVPQIHPAFIQRP--YGIPTHYVY 126

Query: 147 HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPY 206
            Q   Q S  +        S     P   Y  Y G  ++ Y SA   +  A   Q  YPY
Sbjct: 127 PQAFMQPSVVIPHIQPTATSATASSP---YIDYTGAAYAQYASAATAAAAAAYEQ--YPY 186

Query: 207 YAQ-------SSQGYGFGMQYP 222
            A        ++ GYG+ MQ P
Sbjct: 187 AASPAATGYVAAAGYGYAMQQP 200

[Close]
BLAST of Cucsa.348630 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.0e-28
Identity = 84/215 (39.07%), Postives = 114/215 (53.02%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGL 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGMQYP 222
           +  A    + YPY A        ++ GY + +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP 200

[Close]
BLAST of Cucsa.348630 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 86/214 (40.19%), Postives = 113/214 (52.80%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPTSQYS-FPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLS 206
           +Y+         QPT+  S  P   Y  A Y+Q                    YSA    
Sbjct: 127 AYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQ--------------------YSA---- 186

Query: 207 GPAGMFQNLYPYYAQ-------SSQGYGFGMQYP 222
             A    + YPY A        ++ GYG+ +  P
Sbjct: 187 AAAAAAYDQYPYAASPAATGYVTAAGYGYAVPQP 195

[Close]
BLAST of Cucsa.348630 vs. TrEMBL
Match: A0A0A0K998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 1.3e-166
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 287
           LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]
BLAST of Cucsa.348630 vs. TrEMBL
Match: B9RNJ8_RICCO (RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 1.7e-110
Identity = 211/299 (70.57%), Postives = 229/299 (76.59%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQF  +  SN        GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFQMMGGSNL-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDP+AAIRACQNPSPVIDGRRANCNLASLGAHK   PTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFR A G+V PPAYH SSSSY+HQPT QY+FP S YG++GYSQD IYPLNYYGVYG
Sbjct: 121 G-GGRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPY---YAQSSQGYGFGMQYPHLMQYPYLPQQHSSTG 240
           GQQFSPYYSA G SG  GMF N YP+   YAQSSQ +G+G+QYP ++QYP LPQ + STG
Sbjct: 181 GQQFSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTG 240

Query: 241 ILSLPGSNALGTTTSG----------TTATTITAVGSGPSQASP------AVASEPNSS 281
           IL LP S A+ TTT+G          TTA T T V +G   A+P        A E NSS
Sbjct: 241 ILQLPSSMAMTTTTTGATTMTASPITTTAATTTTVTTGVVGAAPVALQASGTAPEQNSS 290

[Close]
BLAST of Cucsa.348630 vs. TrEMBL
Match: A0A067K9C7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-107
Identity = 200/277 (72.20%), Postives = 218/277 (78.70%), Query Frame = 1 

Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 22  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 81

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           D+A+RACQNPSPVIDGRRANCNLASLGAHK  PPTPQHG  GRFR A G+V PPAYH SS
Sbjct: 82  DSAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGT-GRFRSAHGLVAPPAYHGSS 141

Query: 143 SSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQN 202
           SSYIHQPT QY+FP S YG+AGYSQD +YPLNYYGVYGGQQ SPYYS  G SG  GMF N
Sbjct: 142 SSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQLSPYYS-TGASGTPGMFHN 201

Query: 203 LYPYYAQ---SSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSG------ 262
            YP+Y Q   +SQ +GFG+QYP ++QYPYLP  + STGILSLP S  + T+T+G      
Sbjct: 202 FYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILSLPSSMGMATSTTGATTMTT 261

Query: 263 --------TTATTITAVGSGPS--QASPAVASEPNSS 281
                   TT  T   VG+GP   QAS  +ASE NSS
Sbjct: 262 SPTTTTVATTTATTGVVGAGPGALQAS-GMASEQNSS 295

[Close]
BLAST of Cucsa.348630 vs. TrEMBL
Match: M5XL65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016222mg PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 201/291 (69.07%), Postives = 223/291 (76.63%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ RQF  + S+ N+      GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQPRQFQMVGSNINNP-----GQYNDTTFTKIFVGGLAWETQRETMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTP-- 120
           VVITDKNTGRSKGYGFVTFKD +AA+RACQNPSPVIDGRRANCNLASLGA K  PPTP  
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDSEAAMRACQNPSPVIDGRRANCNLASLGAQKTRPPTPHQ 120

Query: 121 QHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGV 180
           QHG  GRFR A G+V PPAYH SSS Y HQPT QY+FP S YG+ GYSQD +YP+NYY V
Sbjct: 121 QHG-AGRFRPAHGLVAPPAYHGSSSPYFHQPTGQYTFPYSAYGYTGYSQDSMYPMNYYSV 180

Query: 181 YGGQQFSPYYSANGLSGPAGMFQNLYPYYAQ----SSQGYGFGMQYPHLMQYPYLPQQ-- 240
           YGGQQFSPYY+  G SGP GM+QN+YP YAQ    SSQ +G G+QYP ++QYPYLP Q  
Sbjct: 181 YGGQQFSPYYTTTGASGPTGMYQNVYPLYAQYAQSSSQAHGLGVQYPQMVQYPYLPHQPY 240

Query: 241 --HSSTGILSLPGSNALGTTTSGTT-ATTITAVGSGPSQASPAVASEPNSS 281
              S+ GILSLP S  + TTT+ TT  TT  A G+G S  + A  SE NSS
Sbjct: 241 AAGSTAGILSLPSSMPITTTTTTTTGTTTAAATGAGASSQASAANSEQNSS 285

[Close]
BLAST of Cucsa.348630 vs. TrEMBL
Match: W9S430_9ROSA (RNA-binding protein 38 OS=Morus notabilis GN=L484_019636 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.5e-106
Identity = 192/258 (74.42%), Postives = 209/258 (81.01%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ RQF  + S+N        GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQPRQFQMVGSNNP-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAA+RACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAMRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G  GRFR A G++ PPAYH S+S+Y HQPT+QY FP S YG+ GYSQD IYPLNYYGVYG
Sbjct: 121 G-SGRFRPAPGLMAPPAYHGSTSTYFHQPTAQYPFPYSAYGYTGYSQDSIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYA---QSSQGYGFGMQYPHLMQYPYLPQQHSSTG 240
            QQFSPY +  G SG  GMF N YP YA   QSSQ +GF +QYP ++QYPYLP  + STG
Sbjct: 181 AQQFSPYLTNAGGSGATGMFHNFYPLYAQYTQSSQAHGFNVQYPQMVQYPYLPHHYGSTG 240

Query: 241 ILSLPGSNALGTTTSGTT 256
           ILSLP S A+ TTT+ TT
Sbjct: 241 ILSLPSSMAMTTTTTITT 250

[Close]
BLAST of Cucsa.348630 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 278.1 bits (710), Expect = 6.1e-75
Identity = 173/340 (50.88%), Postives = 207/340 (60.88%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           M+QQRQF     +NN++         DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EA
Sbjct: 1   MAQQRQFQMEGGNNNTT---------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT-PQ 120
           VVITDKNTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KP PPT P+
Sbjct: 61  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 120

Query: 121 HGVGGRFRGAS---GIVTP-PAYHVSSSS--YIHQP----TSQYSFPLSGYGFAGYSQDR 180
           HG  GRFR      G+V P P +  SSSS  ++HQ     T+Q+ FP S YGF+GYSQ+ 
Sbjct: 121 HGT-GRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 180

Query: 181 IYPLNYYG--VYGGQQFSPYYSANGLSGPAGMFQNLYPYY---------------AQSSQ 240
           +YP+NYY   +YGGQQFSP Y  +  +G  GMF   YPYY                Q+  
Sbjct: 181 MYPMNYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQH 240

Query: 241 GYGFGMQY-----PHLMQYPYLP--------QQHSS----TGILSLPGSNAL-------- 286
             GF  QY     P L+QYPYLP        QQ SS      ILSLP S AL        
Sbjct: 241 HQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSP 300

[Close]
BLAST of Cucsa.348630 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-46
Identity = 105/236 (44.49%), Postives = 130/236 (55.08%), Query Frame = 1 

Query: 7   FHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDK 66
           +H+I SS       L   + DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDK
Sbjct: 3   YHSIPSSGFHY---LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDK 62

Query: 67  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------------- 126
           NTGRSKGYGFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P             
Sbjct: 63  NTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGR 122

Query: 127 -HPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYS----FPLSGYGFAGYSQD 186
             PP+P  G          + +P   H  S  Y   PT  Y     +P   YG   Y  D
Sbjct: 123 VRPPSPYVG---------SVQSPRGLHFGSHPYHQPPTYNYQQGVVYP---YGVTPYGPD 182

Query: 187 RIYPLN--YYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPH 223
            +Y  +  +YG Y GQQ+   Y   G     G       +    + GY  G  Y H
Sbjct: 183 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]
BLAST of Cucsa.348630 vs. TAIR10
Match: AT1G33470.1 (AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-45
Identity = 106/219 (48.40%), Postives = 138/219 (63.01%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHG-VGGRFRGASGIVTPPAYHVSSSSY 146
           +AC +P+PVIDGRRANCNLA+ G  +  P +P HG VGGR      + +P   H  +++ 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPL-NYYGVYGGQQFS-PYYSANGLSG-PAG 206
                 P S Y+ P +  +GF+ YS D  YP  +YY VYGG     P Y +  ++G  A 
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA 182

Query: 207 MFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTG 238
                YP Y Q ++G G    Y  L  YP     +S+ G
Sbjct: 183 PAAGFYP-YLQFAEGNGPVTGYAPL-HYPNHMFHYSAPG 216

[Close]
BLAST of Cucsa.348630 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 176.0 bits (445), Expect = 3.3e-44
Identity = 107/239 (44.77%), Postives = 134/239 (56.07%), Query Frame = 1 

Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGFVTF++ +AA 
Sbjct: 9   DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRG--------ASGIVTPPAY 146
            AC + +PVIDGRRANCNLASLG  +  P TP HG GGR            +G   PP  
Sbjct: 69  SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP- 128

Query: 147 HVSSSSYIHQPTSQYSFPLSGYGFAGYSQD-RIYPLNYYGVYG---GQQFSPYYSAN--- 206
                ++ H P      PL+ +G++ YS D   +P N YG+YG   G Q+  Y + N   
Sbjct: 129 -PQPPTFTHYP----HLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGG 188

Query: 207 -GLSGPAGMFQNLYP--------YYAQSSQGYGFGMQY-PHLMQYPYLPQQHSSTGILS 241
            GL+  A      YP         ++Q    Y     Y PH    P    Q  S   LS
Sbjct: 189 GGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLS 241

[Close]
BLAST of Cucsa.348630 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 175.3 bits (443), Expect = 5.6e-44
Identity = 119/277 (42.96%), Postives = 154/277 (55.60%), Query Frame = 1 

Query: 21  LGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 80
           L   + DTTFTK+FVGGLAWETQ  T+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTF+
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73

Query: 81  DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQ---HGVGGRFRGAS---GIVT 140
           DP+AA RAC +P+P+IDGRRANCNLASLG  +P PP P      + GR R AS   G V 
Sbjct: 74  DPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLPYAVIPNMPGRLRPASPYIGNVQ 133

Query: 141 PPAYHVSSSSYIHQPTSQYSFP---LSGYGFAGYSQDRIYPLN--YYGVYGGQQFSPYYS 200
            P   +   +Y +Q    Y++    +  YG   Y  + +Y  +   Y  Y GQQ+   Y 
Sbjct: 134 GPRGSL-IGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYG 193

Query: 201 ANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGI--LSLPGSNAL 260
             G               A +S  Y    QY  L Q   +P  H  T +   S+PGS+ L
Sbjct: 194 VPG---------------AVNSPVY----QYGQLSQ--TIPNGHGYTAVQGYSVPGSHIL 253

Query: 261 GTTTSGTTATTITAVGSGPSQASPAVASEPNSSELIS 285
                G T +T+T   S P+  +P  +  P  + + S
Sbjct: 254 --QLGGPTVSTMT-TSSMPALQAPYPSGIPGPAPVQS 263

[Close]
BLAST of Cucsa.348630 vs. NCBI nr
Match: gi|449445662|ref|XP_004140591.1| (PREDICTED: RNA-binding protein 24 [Cucumis sativus])

HSP 1 Score: 593.6 bits (1529), Expect = 1.9e-166
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 287
           LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]
BLAST of Cucsa.348630 vs. NCBI nr
Match: gi|659120078|ref|XP_008460001.1| (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 583.9 bits (1504), Expect = 1.5e-163
Identity = 281/286 (98.25%), Postives = 283/286 (98.95%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 287
           LPGSNALGTTTSGTTAT+ TAVGSGPSQAS AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]
BLAST of Cucsa.348630 vs. NCBI nr
Match: gi|223545549|gb|EEF47053.1| (RNA-binding region-containing protein, putative [Ricinus communis])

HSP 1 Score: 407.1 bits (1045), Expect = 2.5e-110
Identity = 211/299 (70.57%), Postives = 229/299 (76.59%), Query Frame = 1 

Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQF  +  SN        GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFQMMGGSNL-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDP+AAIRACQNPSPVIDGRRANCNLASLGAHK   PTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFR A G+V PPAYH SSSSY+HQPT QY+FP S YG++GYSQD IYPLNYYGVYG
Sbjct: 121 G-GGRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPY---YAQSSQGYGFGMQYPHLMQYPYLPQQHSSTG 240
           GQQFSPYYSA G SG  GMF N YP+   YAQSSQ +G+G+QYP ++QYP LPQ + STG
Sbjct: 181 GQQFSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTG 240

Query: 241 ILSLPGSNALGTTTSG----------TTATTITAVGSGPSQASP------AVASEPNSS 281
           IL LP S A+ TTT+G          TTA T T V +G   A+P        A E NSS
Sbjct: 241 ILQLPSSMAMTTTTTGATTMTASPITTTAATTTTVTTGVVGAAPVALQASGTAPEQNSS 290

[Close]
BLAST of Cucsa.348630 vs. NCBI nr
Match: gi|1000974797|ref|XP_002515069.2| (PREDICTED: RNA-binding protein 38 [Ricinus communis])

HSP 1 Score: 398.3 bits (1022), Expect = 1.2e-107
Identity = 202/277 (72.92%), Postives = 219/277 (79.06%), Query Frame = 1 

Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 26  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 85

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           +AAIRACQNPSPVIDGRRANCNLASLGAHK   PTPQHG GGRFR A G+V PPAYH SS
Sbjct: 86  EAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTPQHG-GGRFRPAPGVVAPPAYHGSS 145

Query: 143 SSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQN 202
           SSY+HQPT QY+FP S YG++GYSQD IYPLNYYGVYGGQQFSPYYSA G SG  GMF N
Sbjct: 146 SSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYGGQQFSPYYSA-GASGTPGMFHN 205

Query: 203 LYPY---YAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSG------ 262
            YP+   YAQSSQ +G+G+QYP ++QYP LPQ + STGIL LP S A+ TTT+G      
Sbjct: 206 YYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTGILQLPSSMAMTTTTTGATTMTA 265

Query: 263 ----TTATTITAVGSGPSQASP------AVASEPNSS 281
               TTA T T V +G   A+P        A E NSS
Sbjct: 266 SPITTTAATTTTVTTGVVGAAPVALQASGTAPEQNSS 300

[Close]
BLAST of Cucsa.348630 vs. NCBI nr
Match: gi|643716793|gb|KDP28419.1| (hypothetical protein JCGZ_14190 [Jatropha curcas])

HSP 1 Score: 397.5 bits (1020), Expect = 2.0e-107
Identity = 200/277 (72.20%), Postives = 218/277 (78.70%), Query Frame = 1 

Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 22  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 81

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           D+A+RACQNPSPVIDGRRANCNLASLGAHK  PPTPQHG  GRFR A G+V PPAYH SS
Sbjct: 82  DSAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGT-GRFRSAHGLVAPPAYHGSS 141

Query: 143 SSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQN 202
           SSYIHQPT QY+FP S YG+AGYSQD +YPLNYYGVYGGQQ SPYYS  G SG  GMF N
Sbjct: 142 SSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQLSPYYS-TGASGTPGMFHN 201

Query: 203 LYPYYAQ---SSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSG------ 262
            YP+Y Q   +SQ +GFG+QYP ++QYPYLP  + STGILSLP S  + T+T+G      
Sbjct: 202 FYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILSLPSSMGMATSTTGATTMTT 261

Query: 263 --------TTATTITAVGSGPS--QASPAVASEPNSS 281
                   TT  T   VG+GP   QAS  +ASE NSS
Sbjct: 262 SPTTTTVATTTATTGVVGAGPGALQAS-GMASEQNSS 295

The following BLAST results are available for this feature:
BLAST of Cucsa.348630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH6.7e-3138.89Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM24_HUMAN8.2e-2940.00RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1[more]
RBM24_DANRE3.1e-2842.57RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1[more]
RBM24_MOUSE9.0e-2839.07RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1[more]
RB24A_XENLA2.0e-2740.19RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1[more]
BLAST of Cucsa.348630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K998_CUCSA1.3e-166100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1[more]
B9RNJ8_RICCO1.7e-11070.57RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339... [more]
A0A067K9C7_JATCU1.4e-10772.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1[more]
M5XL65_PRUPE2.0e-10669.07Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016222mg PE=4 SV=1[more]
W9S430_9ROSA7.5e-10674.42RNA-binding protein 38 OS=Morus notabilis GN=L484_019636 PE=4 SV=1[more]
BLAST of Cucsa.348630 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46780.16.1e-7550.88 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.12.1e-4644.49 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G33470.11.7e-4548.40 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22910.33.3e-4444.77 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.15.6e-4442.96 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cucsa.348630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445662|ref|XP_004140591.1|1.9e-166100.00PREDICTED: RNA-binding protein 24 [Cucumis sativus][more]
gi|659120078|ref|XP_008460001.1|1.5e-16398.25PREDICTED: RNA-binding protein 24-B [Cucumis melo][more]
gi|223545549|gb|EEF47053.1|2.5e-11070.57RNA-binding region-containing protein, putative [Ricinus communis][more]
gi|1000974797|ref|XP_002515069.2|1.2e-10772.92PREDICTED: RNA-binding protein 38 [Ricinus communis][more]
gi|643716793|gb|KDP28419.1|2.0e-10772.20hypothetical protein JCGZ_14190 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.348630.1Cucsa.348630.1mRNA
Cucsa.348630.2Cucsa.348630.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 33..90
score: 4.2
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 32..104
score: 1.8
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 31..107
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 13..103
score: 3.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 20..101
score: 2.55
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 26..117
score: 4.5
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 26..117
score: 4.5