Cla007041 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007041
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA-binding protein 68390-68829 (AHRD V1 -- Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Location	Chr6 : 1093376 .. 1094988 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCCCATTTTTTTTCTCTCCCATTTCCCCGTCTTTTTCTTCTTCTCAAAATGGGGATTTGATTTGATTTGATTTCTATTTTTTTGGGTTTTGATTGATTCTGTTTTTAGGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGACGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTTCTTTTTCATTCTTTTCATCTTTACCCTTTTTTTTCCTTAAGTAAATGCTTTGATCTCCTCAATGGATCATAAAAATTCCCACATGCAATGTGTTTTTTTTCCGTTCCAAAACTTGGGATGACTTCCTTCAATGGAGGCCTTTGAATCTGCATTTCTTAAGGACTCATTTTGTCTGAGAAAGAAATCTAAACAAACAAAAGTGGAGTAATATTTTCCCAAACATTAACCAAAAAAAGTTGTGGAACAAATTTGCAGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAACAAGAATTATAAATGGAATAAACAAGACCCGTTTTTTTTTTTCCATTTTGCCCATTTATTGATTAAAAATGTCCTCTATCTTTCTTTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTATGTTTATTTGTTTCTATGTTTGTATGTTCATATATGTGTTGTTTCTTTTTGGTTTAATGTTGTTTTGTGTTTGTTTGTGATCTCCTTTGCATTGATTTTGGTCTGAGCGTCGTTTCGATGCAGAATTATTACGGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGTGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCTAAATGAAATACAAATGCTTATAATCTAATCCATTAGTATGTCATTGATGTTGGGAATTGTTATCTGAAGAATGTCATTTGTTTGGAGCATGATGTTGGTTTTGGAATTTATGTGCAAAATGCAACAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGA

mRNA sequence

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGACGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAATTATTACGGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGTGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGA

Coding sequence (CDS)

ATGTCTCAACAGAGGCAATTTCATAACATTAGCAGCAGCAACAATAACAGCAGCCTTAGCCTTGGAGGCCAATACAATGACACGACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAGAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTTATTGATGGACGAAGAGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCGTCCTCCCACTCCTCAACATGGTGTAGGTGGAAGATTTAGAGGTGCATCTGGGATTGTAACCCCTCCTGCTTATCATGTTTCTTCATCACCTTATATCCATCAACCCACGAGCCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAATTATTACGGTGTTTACAGTGGCCAACAATTTTCTCCTTATTACCCTGCGAGTGGGATTTCGGGACCAGCTGGAATGTTTCAAAATCTATATCCGTATTATGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATACAGTATCCACACCTAATGCAGTACCCATATCTTCCTCAGCAGCATGGTTCGACTGGTATTCTATCACTTCCTGGCTCGAACGCAATAGGAACGACAACTGCAGGTGCAACAGCAACAACGATAATGGCGGTTGGATCGGGGCCTTCACAAGTTTCTTCTGCAGTAGCATCTGAACCGAATTCGTCCGAGCTAATTTCAACTGGATGA

Protein sequence

MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG

Homology

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BLAST of Cla007041 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.6e-30
Identity = 83/196 (42.35%), Postives = 109/196 (55.61%), Query Frame = 1


Query: 17  SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGF 76
           +S ++ G + DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 77  VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPT---PQHGVGGRFRGASGIV 136
           VTFKD  AA RAC++ +P+I+GRRANCNLASLG    + PT   PQ G     R      
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR-----A 122

Query: 137 TPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGI 196
           TPP  HV +        SQ+ +P SG+    + Q     + +YG  S            +
Sbjct: 123 TPP--HVGNH-------SQWYYP-SGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKV 181

Query: 197 SGPAGMFQNLYPYYAQ 210
               G + N   YYAQ
Sbjct: 183 GYVGGTYMN--GYYAQ 181

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BLAST of Cla007041 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-29
Identity = 86/215 (40.00%), Postives = 114/215 (53.02%), Query Frame = 1


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 PYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGI 206
            ++         QPT  +  + P   Y  A Y+Q                    Y A+  
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
           +  A    + YPY A        ++ GYG+ +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP 200

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BLAST of Cla007041 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 88/210 (41.90%), Postives = 111/210 (52.86%), Query Frame = 1


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSSSPYI 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G      + I  P  Y + +    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRVMQPGFTFGVPQIHPAFIQRP--YGIPTHYVY 126

Query: 147 HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQNLYPY 206
            Q   Q S  +        S     P   Y  Y+G  ++ Y  AS  +  A      YPY
Sbjct: 127 PQAFMQPSVVIPHIQPTATSATASSP---YIDYTGAAYAQY--ASAATAAAAAAYEQYPY 186

Query: 207 YAQ-SSQGYGFGIQYPHLMQYPYLPQQHGS 236
            A  ++ GY     Y + MQ P      GS
Sbjct: 187 AASPAATGYVAAAGYGYAMQQPLATAAPGS 208

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BLAST of Cla007041 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-28
Identity = 84/215 (39.07%), Postives = 113/215 (52.56%), Query Frame = 1


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 PYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGI 206
            ++         QPT  +  + P   Y  A Y+Q                    Y A+  
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGIQYP 222
           +  A    + YPY A        ++ GY + +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP 200

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BLAST of Cla007041 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-28
Identity = 81/205 (39.51%), Postives = 109/205 (53.17%), Query Frame = 1


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KPR   P    G +    + +  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYPQ 126

Query: 147 PYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQNL 206
            Y+ Q          G       Q      + Y  Y+   ++ Y  A      A    + 
Sbjct: 127 AYVQQ----------GLVIPHVQQTAAASTSPYIDYTSAAYAQYAAA------AAAAYDQ 186

Query: 207 YPYYAQ-------SSQGYGFGIQYP 222
           YPY A        ++ GYG+ +  P
Sbjct: 187 YPYAASPATTGYVTAAGYGYAVPQP 194

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BLAST of Cla007041 vs. TrEMBL
Match: A0A0A0K998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 6.4e-158
Identity = 270/286 (94.41%), Postives = 277/286 (96.85%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATTI AVGSGPSQ S AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Cla007041 vs. TrEMBL
Match: B9RNJ8_RICCO (RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 3.2e-109
Identity = 208/299 (69.57%), Postives = 226/299 (75.59%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQF  +  SN        GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFQMMGGSNL-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDP+AAIRACQNPSPVIDGRRANCNLASLGAHK R PTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           G GGRFR A G+V PPAYH SSS Y+HQPT QY+FP S YG++GYSQD IYPLNYYGVY 
Sbjct: 121 G-GGRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPY---YAQSSQGYGFGIQYPHLMQYPYLPQQHGSTG 240
           GQQFSPYY A G SG  GMF N YP+   YAQSSQ +G+G+QYP ++QYP LPQ +GSTG
Sbjct: 181 GQQFSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTG 240

Query: 241 ILSLPGSNAIGTTTAGATATTIM---------------AVGSGPSQV-SSAVASEPNSS 281
           IL LP S A+ TTT GAT  T                  VG+ P  + +S  A E NSS
Sbjct: 241 ILQLPSSMAMTTTTTGATTMTASPITTTAATTTTVTTGVVGAAPVALQASGTAPEQNSS 290

[Close]

BLAST of Cla007041 vs. TrEMBL
Match: A0A067K9C7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 6.1e-108
Identity = 199/276 (72.10%), Postives = 221/276 (80.07%), Query Frame = 1


Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 22  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 81

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           D+A+RACQNPSPVIDGRRANCNLASLGAHK RPPTPQHG  GRFR A G+V PPAYH SS
Sbjct: 82  DSAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGT-GRFRSAHGLVAPPAYHGSS 141

Query: 143 SPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQN 202
           S YIHQPT QY+FP S YG+AGYSQD +YPLNYYGVY GQQ SPYY ++G SG  GMF N
Sbjct: 142 SSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQLSPYY-STGASGTPGMFHN 201

Query: 203 LYPYYAQ---SSQGYGFGIQYPHLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGAT---- 262
            YP+Y Q   +SQ +GFG+QYP ++QYPYLP  +GSTGILSLP S  + T+T GAT    
Sbjct: 202 FYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILSLPSSMGMATSTTGATTMTT 261

Query: 263 --ATTIMA--------VGSGPSQV-SSAVASEPNSS 281
              TT +A        VG+GP  + +S +ASE NSS
Sbjct: 262 SPTTTTVATTTATTGVVGAGPGALQASGMASEQNSS 295

[Close]

BLAST of Cla007041 vs. TrEMBL
Match: M5XL65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016222mg PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.0e-107
Identity = 206/291 (70.79%), Postives = 224/291 (76.98%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ RQF  + S+ NN      GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQPRQFQMVGSNINNP-----GQYNDTTFTKIFVGGLAWETQRETMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTP-- 120
           VVITDKNTGRSKGYGFVTFKD +AA+RACQNPSPVIDGRRANCNLASLGA K RPPTP  
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDSEAAMRACQNPSPVIDGRRANCNLASLGAQKTRPPTPHQ 120

Query: 121 QHGVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGV 180
           QHG  GRFR A G+V PPAYH SSSPY HQPT QY+FP S YG+ GYSQD +YP+NYY V
Sbjct: 121 QHG-AGRFRPAHGLVAPPAYHGSSSPYFHQPTGQYTFPYSAYGYTGYSQDSMYPMNYYSV 180

Query: 181 YSGQQFSPYYPASGISGPAGMFQNLYPYYAQ----SSQGYGFGIQYPHLMQYPYLPQQ-- 240
           Y GQQFSPYY  +G SGP GM+QN+YP YAQ    SSQ +G G+QYP ++QYPYLP Q  
Sbjct: 181 YGGQQFSPYYTTTGASGPTGMYQNVYPLYAQYAQSSSQAHGLGVQYPQMVQYPYLPHQPY 240

Query: 241 -HGST-GILSLPGSNAIGTTTAGAT-ATTIMAVGSGPSQVSSAVASEPNSS 281
             GST GILSLP S  I TTT   T  TT  A G+G S  +SA  SE NSS
Sbjct: 241 AAGSTAGILSLPSSMPITTTTTTTTGTTTAAATGAGASSQASAANSEQNSS 285

[Close]

BLAST of Cla007041 vs. TrEMBL
Match: B9GRQ8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17990g PE=4 SV=2)

HSP 1 Score: 395.2 bits (1014), Expect = 6.8e-107
Identity = 207/299 (69.23%), Postives = 223/299 (74.58%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           M+QQRQF      N+       GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MAQQRQFQMAGGGNS-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAA+RACQNPSPVIDGRRANCNLASLGA K RPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAMRACQNPSPVIDGRRANCNLASLGAQKTRPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           G  GRFR   G+V  P Y  S++PY HQPT QYSFP S YG+ GYSQD +YPL YYGVY 
Sbjct: 121 GT-GRFRPVHGVVASPTYPGSAAPYTHQPTGQYSFPYSAYGYTGYSQDAMYPLGYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQ-NLYPY---YAQSSQGYGFGIQYPHLMQYPYLPQQHGST 240
           GQQFSPYY   G SG  GMFQ N YP+   YAQSSQ +GFGIQYP ++QYPYLPQQ GST
Sbjct: 181 GQQFSPYYTTGGASGTPGMFQHNFYPFYTPYAQSSQAHGFGIQYPQMVQYPYLPQQFGST 240

Query: 241 GILSLPGSNAIGTTTAGA-----TATTIMAV-----------GSGPSQVSSAVASEPNS 280
           GILSLP S A+ TTTAGA     T TT  AV           G+G  Q +S  A+E NS
Sbjct: 241 GILSLPSSVAMATTTAGAATMTMTTTTTAAVAPTANTGVVGAGTGALQ-ASGTATEQNS 290

[Close]

BLAST of Cla007041 vs. NCBI nr
Match: gi|659120078|ref|XP_008460001.1| (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 566.6 bits (1459), Expect = 2.4e-158
Identity = 271/286 (94.76%), Postives = 278/286 (97.20%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TAT+  AVGSGPSQ SSAVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Cla007041 vs. NCBI nr
Match: gi|449445662|ref|XP_004140591.1| (PREDICTED: RNA-binding protein 24 [Cucumis sativus])

HSP 1 Score: 564.7 bits (1454), Expect = 9.3e-158
Identity = 270/286 (94.41%), Postives = 277/286 (96.85%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           GVGGRFRGASGIVTPPAYHVSSS YIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240
           GQQFSPYY A+G+SGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNAIGTTTAGATATTIMAVGSGPSQVSSAVASEPNSSELISTG 287
           LPGSNA+GTTT+G TATTI AVGSGPSQ S AVASEPNSSELISTG
Sbjct: 241 LPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Cla007041 vs. NCBI nr
Match: gi|223545549|gb|EEF47053.1| (RNA-binding region-containing protein, putative [Ricinus communis])

HSP 1 Score: 402.9 bits (1034), Expect = 4.7e-109
Identity = 208/299 (69.57%), Postives = 226/299 (75.59%), Query Frame = 1


Query: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQF  +  SN        GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFQMMGGSNL-------GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDP+AAIRACQNPSPVIDGRRANCNLASLGAHK R PTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYS 180
           G GGRFR A G+V PPAYH SSS Y+HQPT QY+FP S YG++GYSQD IYPLNYYGVY 
Sbjct: 121 G-GGRFRPAPGVVAPPAYHGSSSSYVHQPTGQYTFPYSAYGYSGYSQDTIYPLNYYGVYG 180

Query: 181 GQQFSPYYPASGISGPAGMFQNLYPY---YAQSSQGYGFGIQYPHLMQYPYLPQQHGSTG 240
           GQQFSPYY A G SG  GMF N YP+   YAQSSQ +G+G+QYP ++QYP LPQ +GSTG
Sbjct: 181 GQQFSPYYSA-GASGTPGMFHNYYPFYTQYAQSSQAHGYGVQYPQMVQYPCLPQNYGSTG 240

Query: 241 ILSLPGSNAIGTTTAGATATTIM---------------AVGSGPSQV-SSAVASEPNSS 281
           IL LP S A+ TTT GAT  T                  VG+ P  + +S  A E NSS
Sbjct: 241 ILQLPSSMAMTTTTTGATTMTASPITTTAATTTTVTTGVVGAAPVALQASGTAPEQNSS 290

[Close]

BLAST of Cla007041 vs. NCBI nr
Match: gi|643716793|gb|KDP28419.1| (hypothetical protein JCGZ_14190 [Jatropha curcas])

HSP 1 Score: 398.7 bits (1023), Expect = 8.8e-108
Identity = 199/276 (72.10%), Postives = 221/276 (80.07%), Query Frame = 1


Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 22  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 81

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           D+A+RACQNPSPVIDGRRANCNLASLGAHK RPPTPQHG  GRFR A G+V PPAYH SS
Sbjct: 82  DSAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGT-GRFRSAHGLVAPPAYHGSS 141

Query: 143 SPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQN 202
           S YIHQPT QY+FP S YG+AGYSQD +YPLNYYGVY GQQ SPYY ++G SG  GMF N
Sbjct: 142 SSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQLSPYY-STGASGTPGMFHN 201

Query: 203 LYPYYAQ---SSQGYGFGIQYPHLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGAT---- 262
            YP+Y Q   +SQ +GFG+QYP ++QYPYLP  +GSTGILSLP S  + T+T GAT    
Sbjct: 202 FYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILSLPSSMGMATSTTGATTMTT 261

Query: 263 --ATTIMA--------VGSGPSQV-SSAVASEPNSS 281
              TT +A        VG+GP  + +S +ASE NSS
Sbjct: 262 SPTTTTVATTTATTGVVGAGPGALQASGMASEQNSS 295

[Close]

BLAST of Cla007041 vs. NCBI nr
Match: gi|802694206|ref|XP_012083109.1| (PREDICTED: RNA-binding protein 38 [Jatropha curcas])

HSP 1 Score: 398.7 bits (1023), Expect = 8.8e-108
Identity = 199/276 (72.10%), Postives = 221/276 (80.07%), Query Frame = 1


Query: 23  GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 82
           GQYNDTTFTKIFVGGLAWETQR TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP
Sbjct: 27  GQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 86

Query: 83  DAAIRACQNPSPVIDGRRANCNLASLGAHKPRPPTPQHGVGGRFRGASGIVTPPAYHVSS 142
           D+A+RACQNPSPVIDGRRANCNLASLGAHK RPPTPQHG  GRFR A G+V PPAYH SS
Sbjct: 87  DSAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGT-GRFRSAHGLVAPPAYHGSS 146

Query: 143 SPYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYSGQQFSPYYPASGISGPAGMFQN 202
           S YIHQPT QY+FP S YG+AGYSQD +YPLNYYGVY GQQ SPYY ++G SG  GMF N
Sbjct: 147 SSYIHQPTGQYTFPYSAYGYAGYSQDTVYPLNYYGVYGGQQLSPYY-STGASGTPGMFHN 206

Query: 203 LYPYYAQ---SSQGYGFGIQYPHLMQYPYLPQQHGSTGILSLPGSNAIGTTTAGAT---- 262
            YP+Y Q   +SQ +GFG+QYP ++QYPYLP  +GSTGILSLP S  + T+T GAT    
Sbjct: 207 FYPFYTQYPHNSQAHGFGVQYPQMVQYPYLPHHYGSTGILSLPSSMGMATSTTGATTMTT 266

Query: 263 --ATTIMA--------VGSGPSQV-SSAVASEPNSS 281
              TT +A        VG+GP  + +S +ASE NSS
Sbjct: 267 SPTTTTVATTTATTGVVGAGPGALQASGMASEQNSS 300

The following BLAST results are available for this feature:

BLAST of Cla007041 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	5.6e-30	42.35	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RBM24_HUMAN	3.6e-29	40.00	RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1	[more]
RBM24_DANRE	1.1e-28	41.90	RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1	[more]
RBM24_MOUSE	4.0e-28	39.07	RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1	[more]
RB24B_XENLA	5.3e-28	39.51	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]

BLAST of Cla007041 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K998_CUCSA	6.4e-158	94.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087740 PE=4 SV=1	[more]
B9RNJ8_RICCO	3.2e-109	69.57	RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339...	[more]
A0A067K9C7_JATCU	6.1e-108	72.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14190 PE=4 SV=1	[more]
M5XL65_PRUPE	1.0e-107	70.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016222mg PE=4 SV=1	[more]
B9GRQ8_POPTR	6.8e-107	69.23	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17990g PE=4 SV=2	[more]

BLAST of Cla007041 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120078\|ref\|XP_008460001.1\|	2.4e-158	94.76	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
gi\|449445662\|ref\|XP_004140591.1\|	9.3e-158	94.41	PREDICTED: RNA-binding protein 24 [Cucumis sativus]	[more]
gi\|223545549\|gb\|EEF47053.1\|	4.7e-109	69.57	RNA-binding region-containing protein, putative [Ricinus communis]	[more]
gi\|643716793\|gb\|KDP28419.1\|	8.8e-108	72.10	hypothetical protein JCGZ_14190 [Jatropha curcas]	[more]
gi\|802694206\|ref\|XP_012083109.1\|	8.8e-108	72.10	PREDICTED: RNA-binding protein 38 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007041	Cla007041.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..90 score: 4.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..104 score: 2.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 31..108 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 19..113 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 27..130 score: 3.49
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 26..113 score: 6.7E-38coord: 201..229 score: 6.7E-38coord: 135..182 score: 6.7
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 135..182 score: 6.7E-38coord: 26..113 score: 6.7E-38coord: 201..229 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007041	Cla97C06G110440	Watermelon (97103) v2	wmwmbB407
Cla007041	Csa6G087740	Cucumber (Chinese Long) v2	cuwmB537
Cla007041	MELO3C022417	Melon (DHL92) v3.5.1	mewmB140
Cla007041	ClCG06G001180	Watermelon (Charleston Gray)	wcgwmB345
Cla007041	CSPI06G06770	Wild cucumber (PI 183967)	cpiwmB556
Cla007041	Cucsa.348630	Cucumber (Gy14) v1	cgywmB626
Cla007041	CmaCh08G001580	Cucurbita maxima (Rimu)	cmawmB883
Cla007041	Lsi09G018220	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla007041	Cp4.1LG17g10510	Cucurbita pepo (Zucchini)	cpewmB344
Cla007041	CsGy6G006770	Cucumber (Gy14) v2	cgybwmB501
Cla007041	MELO3C022417.2	Melon (DHL92) v3.6.1	medwmB138
Cla007041	CsaV3_6G007110	Cucumber (Chinese Long) v3	cucwmB562
Cla007041	Bhi12G002059	Wax gourd	wgowmB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None