Cucsa.341210 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.341210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMini-ribonuclease 3
Locationscaffold03356 : 3606214 .. 3613070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTTTATCGGCGACTTCGACGTCCATCGTTGCTTCATGGGACACTCAACAGAGGCTTTCATACAATCCCAATGCCCCAAGAAACCCCAACAAGAAACCCAAGTCTCCTTCTTTTTCGCCAACCTCACAAGCCACCGGAAATGCCACCTTGACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTCCTCAACCGTCGCAATCCCAGCTCAACTGAAGGTAAATTCACGATGCTTTTCGATTTTCTGCTGGAAATTTCGAAGTTTCTTCTCTTTGGTTGATAGAAGTGTTGGGAGTTGTTGTTCAAATCGGGTTTCTATCGTGTTTTATGCATTGTGGTGTTAGGAAATTGTAACTGAACTAGATTTCTGTCTGATGGTGGAATTTTTTGGTGTCATATAAAAGTAGATGCAATGCAACCGAGAGAAATGGAAGGTGAAAAGGCTTGTTGTGTTATATTACACACTGAAGGCTTTTGGAAGCTAATTGATGTTGGTTTCTTAACAGTAGTAGTGGAAGACAAGGCACAATGGAACCGAATTTAGAAGATTTTAGTTAAAAGATTCTCATTGTTATTCTTCCAACTTCCAACTTTGAGATAATGAAATGTGAGATTTGTTAATTTTAGGCTGCAAATTGGAGGAGCCAGATGGTCTCTATTTGGGATATGATCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGGTCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGACTGCATCTATGAGGTGCATTGGCAACTCTAACTTTTCGGTATTGGTGTTCTTTTTTAATTTTATGATTATGTCTGATGTCCAGATTTTGGAAGCGTTGTATAGAAATTGATTGAAATTTCATGCCTAGAATGATTTAGAATTGGAGTTTTGTTTTCATTTATGGTTTACCCTAACTGTTTCTGAAATATGCAGCTATATGCTCGCCGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATACAATGATCGTGTTATGGCTGTTGTACGTTGTGAAGCACAAGTACGTCAAGTCTTGCTCAAATTAATGCTTGAAATGAAATAA

mRNA sequence

ATGGTAACTTTATCGGCGACTTCGACGTCCATCGTTGCTTCATGGGACACTCAACAGAGGCTTTCATACAATCCCAATGCCCCAAGAAACCCCAACAAGAAACCCAAGTCTCCTTCTTTTTCGCCAACCTCACAAGCCACCGGAAATGCCACCTTGACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTCCTCAACCGTCGCAATCCCAGCTCAACTGAAGGCTGCAAATTGGAGGAGCCAGATGGTCTCTATTTGGGATATGATCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGGTCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGACTGCATCTATGAGCTATATGCTCGCCGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATACAATGATCGTGTTATGGCTGTTGTACGTTGTGAAGCACAAGTACGTCAAGTCTTGCTCAAATTAATGCTTGAAATGAAATAA

Coding sequence (CDS)

ATGGTAACTTTATCGGCGACTTCGACGTCCATCGTTGCTTCATGGGACACTCAACAGAGGCTTTCATACAATCCCAATGCCCCAAGAAACCCCAACAAGAAACCCAAGTCTCCTTCTTTTTCGCCAACCTCACAAGCCACCGGAAATGCCACCTTGACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTCCTCAACCGTCGCAATCCCAGCTCAACTGAAGGCTGCAAATTGGAGGAGCCAGATGGTCTCTATTTGGGATATGATCAGTGGTTGCCAGATCCACCAAAGGTGCAGAAGCCCCGGTCTGTGTTCAATGCAGCTTCATTAGCATATATTGGCGACTGCATCTATGAGCTATATGCTCGCCGGCACTTTCTGTTCCCTCCATTGAGTATTGAAGAATACAATGATCGTGTTATGGCTGTTGTACGTTGTGAAGCACAAGTACGTCAAGTCTTGCTCAAATTAATGCTTGAAATGAAATAA

Protein sequence

MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTNQIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQVRQVLLKLMLEMK*
Homology
[Close]
BLAST of Cucsa.341210 vs. Swiss-Prot
Match: MRNC_SYNY3 (Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-19
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1 

Query: 96  DPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLL 155
           D P VQ      +  +LAY+GD ++ELY R  +LFPP  I +++ RV+A VR E Q  +L
Sbjct: 18  DAPAVQS----LSPVALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQIL 77

Query: 156 QKLLNDNFLTEAERDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKR 215
             LL    LT+ E++ +R G+N  +S    T +RA   +Y  AS LETL+GYLYL + +R
Sbjct: 78  TTLLPQ--LTDPEKEWVRRGRNAATS----TSRRANPELYQAASGLETLLGYLYLRDARR 132

Query: 216 LDEIM 221
           LDE++
Sbjct: 138 LDELL 132

[Close]
BLAST of Cucsa.341210 vs. Swiss-Prot
Match: MRNC_THEEB (Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=mrnC PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-17
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 1 

Query: 88  LGYDQWLP-DPPKVQKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVV 147
           L + + LP  PP +  P      A+LAY GD +YEL+ R  FL PP  I  Y+ +V+A V
Sbjct: 2   LDFGELLPLQPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHV 61

Query: 148 RCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIG 207
           R E+Q   +  L    + TE ER I R G+N  +       KR  A +Y +A+  E L+G
Sbjct: 62  RAESQARYMDFLW--EYCTETERSIFRQGRNAAADG----PKRVAAKIYRQATGFEALLG 121

Query: 208 YLYLNNVKRLDEIMQKL 224
           YLYL N +RL EI Q L
Sbjct: 122 YLYLTNPQRLQEIFQLL 130

[Close]
BLAST of Cucsa.341210 vs. Swiss-Prot
Match: MRNC_SYNP1 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-12
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1 

Query: 110 ASLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAER 169
           ++LAY GD +YEL+ R  FL PP  I  Y+ +V+A VR E+Q   +  L      T AE 
Sbjct: 25  SALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAEL 84

Query: 170 DILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKL 224
            I R G+N  +       KR  A +Y +A+  E L+GYLYL + +RL +++  L
Sbjct: 85  TIFRQGRNAAADG----PKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132

[Close]
BLAST of Cucsa.341210 vs. Swiss-Prot
Match: MRNC_SYNP6 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mrnC PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-12
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 111 SLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERD 170
           +LAY+GD +YE + R   L P     + +  V+  VR E Q  LL  LL    LT  E +
Sbjct: 27  ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLP--LLTAEELE 86

Query: 171 ILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKL 224
           I+R G+N       R  +R     Y +A+ LETL+GYLYL + +RL  ++Q+L
Sbjct: 87  IVRRGRNAAG----RVPRRLTGEYYQQATGLETLLGYLYLCDPQRLQALLQQL 133

[Close]
BLAST of Cucsa.341210 vs. Swiss-Prot
Match: MRNC_BACCR (Mini-ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) GN=mrnC PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-10
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1 

Query: 108 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNDRV-MAVVRCEAQDVLLQKLLNDNFLTE 167
           N+ +LAY+GD +YE Y R H L           R+  + V  +AQ  ++  LL   FLTE
Sbjct: 8   NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 67

Query: 168 AERDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLY-LNNVKRLDEIMQK 223
            E  +LR G+N  S +     K      Y  +++ E LIGY + LNN +RLDEI+ K
Sbjct: 68  EEEAVLRRGRNANSGT---VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121

[Close]
BLAST of Cucsa.341210 vs. TrEMBL
Match: A0A0A0LDF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848810 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 4.3e-134
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 1 

Query: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTN 60
           MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNA LTATNIRTN
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAILTATNIRTN 60

Query: 61  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120
           QIVSDLLNRRNPSS EGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY
Sbjct: 61  QIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180
           ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV 240
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV 240

Query: 241 INQGS 246
           INQGS
Sbjct: 241 INQGS 245

[Close]
BLAST of Cucsa.341210 vs. TrEMBL
Match: A0A067KXD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24776 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 161/239 (67.36%), Postives = 186/239 (77.82%), Query Frame = 1 

Query: 4   LSATSTSIV-ASWDTQQRLSYNPNAPRNPNKKPKSP--SFSPTSQATGNATLTATNIRTN 63
           LSA S+ IV ASWDTQQRLSYNPNAPR P K P S   S  PT   T + ++T T     
Sbjct: 5   LSAMSSQIVRASWDTQQRLSYNPNAPRKPKKNPISQPNSLPPTPSPTPSPSITLTP---- 64

Query: 64  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 123
           Q VS+LL R   +     K  +    YLGY++W+P PPKV+KPRSV+NAA+LAYIGD IY
Sbjct: 65  QAVSELLKRNTKAQAVVTKFGDT---YLGYERWMPSPPKVEKPRSVYNAATLAYIGDSIY 124

Query: 124 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 183
           ELYARRHFLFPPLSI+EYNDRV AVVRCEAQD LLQKLL+D+ L++ ERD+LRWGKN+G 
Sbjct: 125 ELYARRHFLFPPLSIDEYNDRVTAVVRCEAQDALLQKLLSDDCLSKEERDVLRWGKNIG- 184

Query: 184 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESK 240
           S+KTRTKKRAGAAVYNRASSLETL+GYLYL NV RL+EIM KLGFST  S QMI EE++
Sbjct: 185 SAKTRTKKRAGAAVYNRASSLETLVGYLYLTNVNRLEEIMLKLGFSTGPSSQMILEEAE 235

[Close]
BLAST of Cucsa.341210 vs. TrEMBL
Match: W9S5D6_9ROSA (Mini-ribonuclease 3 OS=Morus notabilis GN=L484_004532 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.0e-78
Identity = 157/236 (66.53%), Postives = 182/236 (77.12%), Query Frame = 1 

Query: 2   VTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTNQ 61
           +T    S  + ASWDTQQ + YNPNAPR P KK   P   PT       TLTA+  R   
Sbjct: 7   LTSCPLSLRVRASWDTQQMVPYNPNAPRKPPKKTPPPP-PPT------ITLTASTARMID 66

Query: 62  IVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYE 121
            +S LL R  P      ++E+ D  YLG+D+WLP PPKVQKPRS+FNAA+LAY+GDCIYE
Sbjct: 67  SISQLLKRHPPG-----EVEKMDDTYLGFDRWLPSPPKVQKPRSMFNAAALAYLGDCIYE 126

Query: 122 LYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGSS 181
           LYARRHFLFPPLSIEEYN RV AVV CEAQD LLQKL++DN+L+E ER+ILRWGKN+G S
Sbjct: 127 LYARRHFLFPPLSIEEYNVRVTAVVCCEAQDALLQKLISDNYLSEQERNILRWGKNIG-S 186

Query: 182 SKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEE 238
           +KTRTKKRAG AVYNRASSLETLIGYLYL N+KRL+EIM K+GFSTDSS+Q+I EE
Sbjct: 187 AKTRTKKRAGTAVYNRASSLETLIGYLYLTNMKRLEEIMVKIGFSTDSSMQLILEE 229

[Close]
BLAST of Cucsa.341210 vs. TrEMBL
Match: A9PHK9_POPTR (URF 4-related family protein OS=Populus trichocarpa GN=POPTR_0001s20750g PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.3e-77
Identity = 161/230 (70.00%), Postives = 180/230 (78.26%), Query Frame = 1 

Query: 13  ASWDTQQRLSYNPNAPRNP--NKKPKSPSFSPTSQA---TGNATLTATNIRTNQIVSDLL 72
           AS DTQQRLSYNPNAP+NP  N  PK  +F PTS A   +   TLTA      Q VS LL
Sbjct: 22  ASVDTQQRLSYNPNAPKNPFKNLNPKPNNFVPTSTAPAPSSTVTLTA------QTVSGLL 81

Query: 73  NRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRH 132
            R     T     E+ +  YLGY++WLP PPKV+KPRSVFNAA+LAYIGD I+ELYARRH
Sbjct: 82  KR-----TTVIVQEQLNDSYLGYERWLPSPPKVEKPRSVFNAATLAYIGDSIFELYARRH 141

Query: 133 FLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGSSSKTRTK 192
           FLFPPLSIEE+NDRVMAVVRCEAQD LLQKLLNDN+L+E ER ILRWGKNVG S+KTRTK
Sbjct: 142 FLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVG-STKTRTK 201

Query: 193 KRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEE 238
           +R G AVYNRASSLETL+G+LYL NV RL+E+M KLGFSTDSS QMI EE
Sbjct: 202 RRVGVAVYNRASSLETLVGFLYLTNVSRLEEVMLKLGFSTDSSTQMIPEE 239

[Close]
BLAST of Cucsa.341210 vs. TrEMBL
Match: G7IUJ7_MEDTR (Ribonuclease III domain protein OS=Medicago truncatula GN=MTR_2g100220 PE=4 SV=2)

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-76
Identity = 154/230 (66.96%), Postives = 178/230 (77.39%), Query Frame = 1 

Query: 11  IVASWDTQQRLSYNPNAPRNPNKKPKSP-SFSPTSQATGNATLTATNIRTNQIVSDLLNR 70
           + ASWDTQQRL YN NAPR    +P  P S SPTS +   +T      R    +SDLL R
Sbjct: 23  VKASWDTQQRLPYNRNAPRKLTTQPPKPQSPSPTSSSPAPST------RNENYISDLLKR 82

Query: 71  RNPSSTEGC--KLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIYELYARRH 130
             P  T G   +++E D  YLGYD+WLP PPKV KPRSVFNAA+LAYIGDCIYELYARRH
Sbjct: 83  ATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRH 142

Query: 131 FLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGSSSKTRTK 190
           FLFPPLSIEE+NDRVMAVVRCEAQD LLQKLL  NFL++ ERD+LRWGKN+  SSKT+TK
Sbjct: 143 FLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLSDQERDVLRWGKNI-ISSKTKTK 202

Query: 191 KRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEE 238
           +RAGAAVYNRASSLETL+GYLYL NV RL+++M +LGFS DSS+ +  EE
Sbjct: 203 RRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEE 245

[Close]
BLAST of Cucsa.341210 vs. TAIR10
Match: AT1G55140.1 (AT1G55140.1 Ribonuclease III family protein)

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-74
Identity = 151/238 (63.45%), Postives = 183/238 (76.89%), Query Frame = 1 

Query: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTN 60
           M  LSA+ST + A+ DTQ +L YNPNAPRN  K     SF P S  + ++   ATN+  +
Sbjct: 1   MAILSASSTIVRAALDTQPKLRYNPNAPRNVKKNSNLSSFVPPSSPSSSSP--ATNLSVS 60

Query: 61  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120
             VSDLL R  P+S +    +  D   +GY++W P PPKV+KPRSVFNAASLAYIGD IY
Sbjct: 61  --VSDLLKR--PASKDIG--DGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIY 120

Query: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180
           E+YARRHFLFPPLSIEEYNDRV AVVRCEAQ  LLQKL++D+FLT+ ERDILRWGKNVG 
Sbjct: 121 EIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVG- 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 239
           S KTR+ +RAG AVYN+ASSLETLIGYLYL+N KRL+E+MQKLGFS+ SS + + +E+
Sbjct: 181 SVKTRSTRRAGVAVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMVKEA 229

[Close]
BLAST of Cucsa.341210 vs. TAIR10
Match: AT3G13740.1 (AT3G13740.1 Ribonuclease III family protein)

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-73
Identity = 147/238 (61.76%), Postives = 180/238 (75.63%), Query Frame = 1 

Query: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTN 60
           MV LSA+ST + A+ DTQ RL YNPNAPR   K P   SF P      +  ++ +     
Sbjct: 1   MVILSASST-VRAALDTQPRLPYNPNAPRKVKKIPNGNSFLPPPSPAPSPGISIS----- 60

Query: 61  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120
             V+DLL R  PSS E     + D  Y+GY+ W P PPK++KPRSVFN ASLA+IGD IY
Sbjct: 61  --VADLLKR--PSSKE--ITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIY 120

Query: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180
           ELYARRHFLFPPLSIE+YNDRV AVVRCEAQ  LL KL++D+FLT+ ERDILRWGKN+G 
Sbjct: 121 ELYARRHFLFPPLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLG- 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 239
           S++TRT++RAG AVYN+ASSLETLIGYLYL N KRL++IM+KLGFS+DSS +++ EE+
Sbjct: 181 SARTRTRRRAGNAVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEET 225

[Close]
BLAST of Cucsa.341210 vs. NCBI nr
Match: gi|449458177|ref|XP_004146824.1| (PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 6.1e-134
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 1 

Query: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTN 60
           MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNA LTATNIRTN
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAILTATNIRTN 60

Query: 61  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120
           QIVSDLLNRRNPSS EGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY
Sbjct: 61  QIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180
           ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV 240
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESKV 240

Query: 241 INQGS 246
           INQGS
Sbjct: 241 INQGS 245

[Close]
BLAST of Cucsa.341210 vs. NCBI nr
Match: gi|659093582|ref|XP_008447605.1| (PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo])

HSP 1 Score: 454.5 bits (1168), Expect = 1.2e-124
Identity = 229/238 (96.22%), Postives = 232/238 (97.48%), Query Frame = 1 

Query: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLTATNIRTN 60
           MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKP S S SPTSQ+TGNATLTATNIRT+
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSPSPTSQSTGNATLTATNIRTD 60

Query: 61  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120
           QIVSDLLNRRN SS EGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY
Sbjct: 61  QIVSDLLNRRNRSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180
           ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLT AERDILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTGAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 239
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQ+ISEES
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEES 238

[Close]
BLAST of Cucsa.341210 vs. NCBI nr
Match: gi|1009112022|ref|XP_015866222.1| (PREDICTED: mini-ribonuclease 3-like [Ziziphus jujuba])

HSP 1 Score: 313.9 bits (803), Expect = 2.4e-82
Identity = 165/250 (66.00%), Postives = 193/250 (77.20%), Query Frame = 1 

Query: 2   VTLSATSTS--------IVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNATLT 61
           V+++A+S+S        + +SWDTQQ L YNPNAPR   K        PTSQ     TL+
Sbjct: 6   VSVAASSSSPALSAGVRVRSSWDTQQMLPYNPNAPRKLKKN------KPTSQPPPTVTLS 65

Query: 62  ATNIRTNQIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLA 121
            +  RT   ++DLL R  P+  E  K EE    YLGY+QW+P PPKVQKPRSVFNAASLA
Sbjct: 66  TSTTRTILTIADLLKRPTPAPEETAKKEE---FYLGYEQWMPSPPKVQKPRSVFNAASLA 125

Query: 122 YIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILR 181
           YIGD IYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQD LLQKLL+D++L+E ER++LR
Sbjct: 126 YIGDSIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLHDDYLSEQERNVLR 185

Query: 182 WGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQM 241
           WGKN+ +S+KTRTKKRAGAAVYNRASSLETLIGYLYL N+KRL+EIMQKLGFSTDSS+Q+
Sbjct: 186 WGKNI-NSAKTRTKKRAGAAVYNRASSLETLIGYLYLTNLKRLEEIMQKLGFSTDSSIQL 245

Query: 242 ISEESKVINQ 244
             +E   I Q
Sbjct: 246 TLDEVNAIQQ 245

[Close]
BLAST of Cucsa.341210 vs. NCBI nr
Match: gi|802577430|ref|XP_012068993.1| (PREDICTED: uncharacterized protein LOC105631472 isoform X2 [Jatropha curcas])

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-78
Identity = 161/239 (67.36%), Postives = 186/239 (77.82%), Query Frame = 1 

Query: 4   LSATSTSIV-ASWDTQQRLSYNPNAPRNPNKKPKSP--SFSPTSQATGNATLTATNIRTN 63
           LSA S+ IV ASWDTQQRLSYNPNAPR P K P S   S  PT   T + ++T T     
Sbjct: 5   LSAMSSQIVRASWDTQQRLSYNPNAPRKPKKNPISQPNSLPPTPSPTPSPSITLTP---- 64

Query: 64  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 123
           Q VS+LL R   +     K  +    YLGY++W+P PPKV+KPRSV+NAA+LAYIGD IY
Sbjct: 65  QAVSELLKRNTKAQAVVTKFGDT---YLGYERWMPSPPKVEKPRSVYNAATLAYIGDSIY 124

Query: 124 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 183
           ELYARRHFLFPPLSI+EYNDRV AVVRCEAQD LLQKLL+D+ L++ ERD+LRWGKN+G 
Sbjct: 125 ELYARRHFLFPPLSIDEYNDRVTAVVRCEAQDALLQKLLSDDCLSKEERDVLRWGKNIG- 184

Query: 184 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESK 240
           S+KTRTKKRAGAAVYNRASSLETL+GYLYL NV RL+EIM KLGFST  S QMI EE++
Sbjct: 185 SAKTRTKKRAGAAVYNRASSLETLVGYLYLTNVNRLEEIMLKLGFSTGPSSQMILEEAE 235

[Close]
BLAST of Cucsa.341210 vs. NCBI nr
Match: gi|802577428|ref|XP_012068992.1| (PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas])

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-78
Identity = 161/239 (67.36%), Postives = 186/239 (77.82%), Query Frame = 1 

Query: 4   LSATSTSIV-ASWDTQQRLSYNPNAPRNPNKKPKSP--SFSPTSQATGNATLTATNIRTN 63
           LSA S+ IV ASWDTQQRLSYNPNAPR P K P S   S  PT   T + ++T T     
Sbjct: 5   LSAMSSQIVRASWDTQQRLSYNPNAPRKPKKNPISQPNSLPPTPSPTPSPSITLTP---- 64

Query: 64  QIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 123
           Q VS+LL R   +     K  +    YLGY++W+P PPKV+KPRSV+NAA+LAYIGD IY
Sbjct: 65  QAVSELLKRNTKAQAVVTKFGDT---YLGYERWMPSPPKVEKPRSVYNAATLAYIGDSIY 124

Query: 124 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 183
           ELYARRHFLFPPLSI+EYNDRV AVVRCEAQD LLQKLL+D+ L++ ERD+LRWGKN+G 
Sbjct: 125 ELYARRHFLFPPLSIDEYNDRVTAVVRCEAQDALLQKLLSDDCLSKEERDVLRWGKNIG- 184

Query: 184 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEESK 240
           S+KTRTKKRAGAAVYNRASSLETL+GYLYL NV RL+EIM KLGFST  S QMI EE++
Sbjct: 185 SAKTRTKKRAGAAVYNRASSLETLVGYLYLTNVNRLEEIMLKLGFSTGPSSQMILEEAE 235

The following BLAST results are available for this feature:
BLAST of Cucsa.341210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MRNC_SYNY38.6e-1943.20Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3... [more]
MRNC_THEEB2.8e-1740.88Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=mrnC PE=3 ... [more]
MRNC_SYNP11.6e-1238.60Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC PE=3 SV=1[more]
MRNC_SYNP65.9e-1238.05Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 14... [more]
MRNC_BACCR4.3e-1037.61Mini-ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... [more]
BLAST of Cucsa.341210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDF2_CUCSA4.3e-13499.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848810 PE=4 SV=1[more]
A0A067KXD0_JATCU1.5e-7867.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24776 PE=4 SV=1[more]
W9S5D6_9ROSA2.0e-7866.53Mini-ribonuclease 3 OS=Morus notabilis GN=L484_004532 PE=4 SV=1[more]
A9PHK9_POPTR6.3e-7770.00URF 4-related family protein OS=Populus trichocarpa GN=POPTR_0001s20750g PE=2 SV... [more]
G7IUJ7_MEDTR1.8e-7666.96Ribonuclease III domain protein OS=Medicago truncatula GN=MTR_2g100220 PE=4 SV=2[more]
BLAST of Cucsa.341210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55140.12.0e-7463.45 Ribonuclease III family protein[more]
AT3G13740.13.8e-7361.76 Ribonuclease III family protein[more]
BLAST of Cucsa.341210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458177|ref|XP_004146824.1|6.1e-13499.18PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus][more]
gi|659093582|ref|XP_008447605.1|1.2e-12496.22PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo][more]
gi|1009112022|ref|XP_015866222.1|2.4e-8266.00PREDICTED: mini-ribonuclease 3-like [Ziziphus jujuba][more]
gi|802577430|ref|XP_012068993.1|2.1e-7867.36PREDICTED: uncharacterized protein LOC105631472 isoform X2 [Jatropha curcas][more]
gi|802577428|ref|XP_012068992.1|2.1e-7867.36PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR000999RNase_III_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.341220.2Cucsa.341220.2mRNA
Cucsa.341210.1Cucsa.341210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainGENE3DG3DSA:1.10.1520.10coord: 101..153
score: 1.6
IPR000999Ribonuclease III domainunknownSSF69065RNase III domain-likecoord: 105..155
score: 9.6
NoneNo IPR availablePANTHERPTHR34276FAMILY NOT NAMEDcoord: 1..162
score: 1.1
NoneNo IPR availablePANTHERPTHR34276:SF1SUBFAMILY NOT NAMEDcoord: 1..162
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.341210Cla012614Watermelon (97103) v1cgywmB611
Cucsa.341210Csa3G848810Cucumber (Chinese Long) v2cgycuB478
Cucsa.341210MELO3C013052Melon (DHL92) v3.5.1cgymeB560
Cucsa.341210ClCG07G013710Watermelon (Charleston Gray)cgywcgB589
Cucsa.341210CSPI03G41460Wild cucumber (PI 183967)cgycpiB504
Cucsa.341210CmaCh14G012650Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.341210CmoCh14G013000Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.341210Lsi07G005660Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.341210Cp4.1LG03g14370Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.341210MELO3C013052.2Melon (DHL92) v3.6.1cgymedB561
Cucsa.341210CsaV3_3G043900Cucumber (Chinese Long) v3cgycucB523
Cucsa.341210Cla97C07G140530Watermelon (97103) v2cgywmbB589
Cucsa.341210Bhi01G002116Wax gourdcgywgoB681
Cucsa.341210Carg06437Silver-seed gourdcarcgyB0144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.341210Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.341210Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.341210Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.341210Bottle gourd (USVL1VR-Ls)cgylsiB548
Cucsa.341210Melon (DHL92) v3.6.1cgymedB554
Cucsa.341210Silver-seed gourdcarcgyB0246
Cucsa.341210Silver-seed gourdcarcgyB1146
Cucsa.341210Cucumber (Chinese Long) v3cgycucB528
Cucsa.341210Watermelon (97103) v2cgywmbB592
Cucsa.341210Wax gourdcgywgoB691
Cucsa.341210Cucumber (Gy14) v1cgycgyB147
Cucsa.341210Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.341210Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.341210Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.341210Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.341210Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.341210Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.341210Wild cucumber (PI 183967)cgycpiB511
Cucsa.341210Cucumber (Chinese Long) v2cgycuB485
Cucsa.341210Melon (DHL92) v3.5.1cgymeB553
Cucsa.341210Watermelon (Charleston Gray)cgywcgB578
Cucsa.341210Watermelon (97103) v1cgywmB608