Carg06437 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06437
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mini-ribonuclease 3
Location	Cucurbita_argyrosperma_scaffold_051 : 481444 .. 485459 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAAAAATGCTAACTTTATCGGCGACTTCGACGAGCATTGTTGCTTCATGGGACACTCAACAGAGGCTTACGTACAATCCTAATGCCCCAAGAAACCCCAACAAGAAACCCAAATCTCTATCTGTCTCGCCGACCTCCCAATCCACTGGAAATGCTACCTTAACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTTCTCAAGCGTCGCAGTCCCGGCTCAAATGAAGGTAAATTCATGCATAGGTTTCTGATTTCTTTAATGGTTTTTCGATTTTCTGTCGGGAAATTTGAGGTTTCTTCTGTCTGGTTGATGGGAGTGTTTGAATTTGTTAGTCAGGTTGGGTTTTGTTGGGTAATGGTAATTGAACTCGATGTCTGTCAGGTGGTGAAATTGTTTGGTGGCGTTATAGAAAAAATGGATGCACTGCAACCGATTAAAATGGAAATTGAAAAAGGATTGTTGGTTGGTTATGAGTTTATAGGGAAATCAAAAGCAAAGCCATTGGAGCATGCTCCAATTAGACAATATCATACTATTAGGAAGGTTCGTGATGCCTAACATGGTATCGGAGCCATGTCCTTAACTTAGTCAAGTCAATAGAATCCTCAAATGTCGAACAAAGAAATTGTGAGCCTAGAAGATGTAGTCAAAAGTGACTCAAGTGTCAAACAAAGGGTGTACTTTGTTTGAGGGCTTGTTGAGCCTCAATTAAGGTGAGGCTGTTCGAGGGCTACATAGACCTTAAGGGAGGCTCTATGGTGTACTTTATTCGAGAGGAGGATTGTTGAGGATTGTCGGGAGAGGAGTCCCACATTGGCTAATTAAGAGATTGGTCATGGGTTTATAAGTAAGGAACACTATCTCTATTGGATAATATCATACTGTTATGGAGGTTCGTGATCCCTAACAAGGATTAGAAAAGTTCAATTTGTTGTTGCTTCGCTTGATTTCTTTTCATTTTTCTAATGAGGGCGTGTTATGTTTTATAACACATTCAAGACGTTCTTAAGCTAATCAACATTGGTAAGAGTATTGGTGGAAGATAAGGCACAATGGAAACGAGCTTAGAAGATTTTAGTCAAAGGACTCTCATTGTTATTGTTTCAACTTTGAGATGTTTTCACGTAATGTGAGATTTGTTAATCATTTTCGATTGTTTTTACTTTTAGGCAGCAAATCAGTGGAACCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAAATCCGGCGAAGGTGCAGAAACCCCGATCCGTGTTCAATGCAGCTTCACTAGCATACATGGGTGATTGCATCTATGAGGTGCATTTACGACTCGAACTTCTTAGTATTGATGTTGTTTTCGAATGTGATGTTTGTTTCTAATGTCCAGAGTTTCGAACCGCGATATCAAATGGGTTGCAATTTTCATGCCTATAATGATTTAGTTTATGATACTGTGATGTTTGGTTTTCCTTTTTGGCTTACCCTGACCGTTTCTGAAATATGCAGCTATATGCTCGCAGGCACTTTCTGTTCCCGACGTTGAATATCGAAGAATACAATGACCGTGTTATGGCTGTTGTACGTTGTGAAGCACAAGTATGTCAAAGTCTTGCTCAATTTAATGCTTGAATTGAATAAATTGTTTCCTAACAATGTACAATTTCCGTCTTTATAAATATAAATATTGTTCTAACAAACTGTAATAGCCCAAGTCCACCGCTAACAACAGATATTGTTCTCTTTGAGTTTTCCCTTTCAAGCTTCCCCTCAAGATTTTAAAACGCGTCCACTAGGGAGAGGTTTTCACACCCTTACAAGGAATGTTTCGTTCTCCGCCCCAGCCGATGTGGGATCTCACAATCCACCCCCTTGGAGCCCAGCGTCCTCGCTGGCACATCGTTCGGTGTCTGGCTTTGATACCATTTGTAACAGCCCAAGCCCACTGCTAGTGGATATTGTCATCTTTGGGTTTTCCCTTTGGGGCTTCCCCTCAAAGTTTTAAAACGCGTCCACTGGGGAGAGGTTTCCACACCCTTAAAAGGAATGTTTCGTTCTCCAACCGGTGTGGGATCTCACAATCCAACCCCCTTGTGGACCCAACGTCCTCACTGGCACGTCGTTCGGTGTCTGGCTCTAATACCATTTGTAACAACCCAAGCCTACCACTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCTCTTAAGGTTTTAAAACGCGTCCACTAGGGAGAGGTTTCCACACTCTTATAAGTAATATTTCCTTCCATTCTCCAACCGATGTGGGATCTCACAATCCAACCCCCTTGTGGGCCCATCGTCCAGTGTCGGGCTCTAATACCATTTGTAACAATCCAAGTCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCTCTTAAGGTTTTAAAATGCGTCCACTAGGGAGAGATTTCCACACCCTTATAAGTAATGTTTCGTTCCCTCTCCAACCGATGTTTCGTTCCCTCTCCAGCGTCCTCGCTAACACATCGTTCAATGTCTAGCTCTGATATCATTTGTAACATCTCAAGCCCACCGCTAGTGGATATTGTCTTCTTTGAGCTTTCCCTTTCCGACTTCCCCTCAAGGTTTTAAAACGCGTCCACTAGGGAGATATTTTCACACCCTTATAAGCAATGTTTCATTCCCCTCTCCAACCGACGTGAAATCTAACGCAAACGGTCAATTTCCTCTTATTAATACGAGGTAGAAGACTTTTATACTCAGGTTGATTTTGTTATATTTCAGGATGTTCTTCTCCAGAAGCTTCTAAATGATAATTTCTTAACAGAGGCAGAGAGGTCAGTTATAAGTATATTGTCATTTCATATGTTTTCTTCATTTCCTACTTTAATGCATAGAACTCTCTGTCGACTAGAAGCGAAAATTTTAATGGCCTCTTTAATCCTCATTCCTGATTTGTTGAATCTGATATACGTTAATGTAGGGACATCCTTCGATGGGGAAAAAACGTTGGTTCGTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAACAGAGCATCTTCACTAGAAACCTTAGTCAGTTTCCTTTAACTTCTTGCACGTTTGAATCAATATCGCGATTTCATCGAACCAAATGCCCGAAACTTATTGTTTATATTTTCTGTAGATCGGTTACCTTTACCTGAACAACGTGAAACGGTTGGATGAAATCATGAAAAAGCTCGGCTTCTCGACTGATTCGTCCTTGCAATTGATTCCAGAGGAATCAAATAGTAAGTTTCGTTATAAGAATTGCAATCCCTTTCCTTTTTTCAACGAAAGCGTGGTTTCTTATAAAAAATGATCATGTGCTATTCGAGATCATTTGTTCTAGACATTATTCATTCTCATTTGCATTCATTTTGATCCTTTCCAAGATGAACTCCCATCATCCTTTCCACTAGGTGACCAACCAAGCAAGTCAGGTGACAAAGACGAAACCTGATCATCGTTGAGTAAGCCACCGTGCTGCTACCGCGCTGATACTTCAAAACGGGTTAGTCAATTGATGTCTTCACAATTGATCAGAAATCGGATTTTGTGGCTACTCGCTCTGCATGCTCTCTGTACATCGTACATCCTTCTTTCCCATACATAAAGTTTTGTACAAATAAGCATGTTTAGTTGACATTTTTGGTTCTTAGTTATCTCTTCCTTGTGTACTTTGTGGGAGTTATGTACATTATTCTGTGAAACTCTGTTACCACTTCCCACTTACCATGTTGTATTCTGATGATGCTCTCTGTGGTAACATTGCATTGTAATAGAGATACCCTATAGGAGATCTTTAGCTCAATGGGAGGTAGTCTGTGTTTGTGTTCGGATTGTATATTTAGGCCACAATTCCCTCGGTTTGGACTACCTATGTAATGGCCCAAGCCCACTGGTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAATTTTGTAAAACGTGTCTGCTAGGG

mRNA sequence

TAAAAAAAAATGCTAACTTTATCGGCGACTTCGACGAGCATTGTTGCTTCATGGGACACTCAACAGAGGCTTACGTACAATCCTAATGCCCCAAGAAACCCCAACAAGAAACCCAAATCTCTATCTGTCTCGCCGACCTCCCAATCCACTGGAAATGCTACCTTAACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTTCTCAAGCGTCGCAGTCCCGGCTCAAATGAAGGCAGCAAATCAGTGGAACCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAAATCCGGCGAAGGTGCAGAAACCCCGATCCGTGTTCAATGCAGCTTCACTAGCATACATGGGTGATTGCATCTATGAGCTATATGCTCGCAGGCACTTTCTGTTCCCGACGGACATCCTTCGATGGGGAAAAAACGTTGGTTCGTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAACAGAGCATCTTCACTAGAAACCTTAATCGGTTACCTTTACCTGAACAACGTGAAACGGTTGGATGAAATCATGAAAAAGCTCGGCTTCTCGACTGATTCGTCCTTGCAATTGATTCCAGAGGAATCAAATAATGAACTCCCATCATCCTTTCCACTAGGTGACCAACCAAGCAAGTCAGGTGACAAAGACGAAACCTGATCATCGTTGAGTAAGCCACCGTGCTGCTACCGCGCTGATACTTCAAAACGGGTTAGTCAATTGATGTCTTCACAATTGATCAGAAATCGGATTTTGTGGCTACTCGCTCTGCATGCTCTCTGTACATCGTACATCCTTCTTTCCCATACATAAAGTTTTGTACAAATAAGCATGTTTAGTTGACATTTTTGGTTCTTAGTTATCTCTTCCTTGTGTACTTTGTGGGAGTTATGTACATTATTCTGTGAAACTCTGTTACCACTTCCCACTTACCATGTTGTATTCTGATGATGCTCTCTGTGGTAACATTGCATTGTAATAGAGATACCCTATAGGAGATCTTTAGCTCAATGGGAGGTAGTCTGTGTTTGTGTTCGGATTGTATATTTAGGCCACAATTCCCTCGGTTTGGACTACCTATGTAATGGCCCAAGCCCACTGGTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAATTTTGTAAAACGTGTCTGCTAGGG

Coding sequence (CDS)

ATGCTAACTTTATCGGCGACTTCGACGAGCATTGTTGCTTCATGGGACACTCAACAGAGGCTTACGTACAATCCTAATGCCCCAAGAAACCCCAACAAGAAACCCAAATCTCTATCTGTCTCGCCGACCTCCCAATCCACTGGAAATGCTACCTTAACCGCAACGAACATTCGAACCAACCAAATTGTCTCCGACCTTCTCAAGCGTCGCAGTCCCGGCTCAAATGAAGGCAGCAAATCAGTGGAACCAGATGGTCTCTATTTGGGATATGAGCAGTGGTTGCCAAATCCGGCGAAGGTGCAGAAACCCCGATCCGTGTTCAATGCAGCTTCACTAGCATACATGGGTGATTGCATCTATGAGCTATATGCTCGCAGGCACTTTCTGTTCCCGACGGACATCCTTCGATGGGGAAAAAACGTTGGTTCGTCCTCTAAAACACGTACAAAAAAACGTGCTGGTGCTGCAGTTTATAACAGAGCATCTTCACTAGAAACCTTAATCGGTTACCTTTACCTGAACAACGTGAAACGGTTGGATGAAATCATGAAAAAGCTCGGCTTCTCGACTGATTCGTCCTTGCAATTGATTCCAGAGGAATCAAATAATGAACTCCCATCATCCTTTCCACTAGGTGACCAACCAAGCAAGTCAGGTGACAAAGACGAAACCTGA

Protein sequence

MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTNQIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIYELYARRHFLFPTDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNNELPSSFPLGDQPSKSGDKDET

Homology

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BLAST of Carg06437 vs. NCBI nr
Match: XP_023526365.1 (uncharacterized protein LOC111789879 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.8 bits (1000), Expect = 6.2e-105
Identity = 212/261 (81.23%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN
Sbjct: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNP KVQKPRSVFNAASLAYMGDCIY
Sbjct: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIY 120

Query: 121 ELYARRHFLFPT-------------------------------------DILRWGKNVGS 180
           ELYARRHFLFPT                                     DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPTLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNN 225
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESN+
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNS 240

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BLAST of Carg06437 vs. NCBI nr
Match: XP_022980704.1 (uncharacterized protein LOC111479993 [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 4.5e-103
Identity = 210/261 (80.46%), Postives = 212/261 (81.23%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTG ATLTATNIRTN
Sbjct: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGKATLTATNIRTN 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLLKRRSP SNEGSKSVEPDGLYLGYEQWLPNP KVQKPRSVFNAASLAYMGDCIY
Sbjct: 61  QIVSDLLKRRSPVSNEGSKSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIY 120

Query: 121 ELYARRHFLFPT-------------------------------------DILRWGKNVGS 180
           ELYARRHFLFPT                                     DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPTLNIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNN 225
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESN+
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNS 240

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BLAST of Carg06437 vs. NCBI nr
Match: XP_022956334.1 (uncharacterized protein LOC111458065 [Cucurbita moschata])

HSP 1 Score: 381.3 bits (978), Expect = 2.2e-102
Identity = 208/261 (79.69%), Postives = 212/261 (81.23%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M TL+ATSTSIVASWDTQQRLTYNPNA RNPNKKPKSLSVSPTSQSTGNATLTATNIRTN
Sbjct: 1   MPTLTATSTSIVASWDTQQRLTYNPNASRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNP KVQKPRSVFNAASLAYMGDCIY
Sbjct: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPPKVQKPRSVFNAASLAYMGDCIY 120

Query: 121 ELYARRHFLFPT-------------------------------------DILRWGKNVGS 180
           ELYARRHFLFPT                                     DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPTLNIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNN 225
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNV+RLDEIMKKLGFSTDSSLQLIPEESN+
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVERLDEIMKKLGFSTDSSLQLIPEESNS 240

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BLAST of Carg06437 vs. NCBI nr
Match: XP_008447605.1 (PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 2.5e-90
Identity = 186/251 (74.10%), Postives = 198/251 (78.88%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M+TLSATSTSIVASWDTQQRL+YNPNAPRNPNKKP SLS SPTSQSTGNATLTATNIRT+
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSPSPTSQSTGNATLTATNIRTD 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLL RR+  S EG K  EPDGLYLGY+QWLP+P KVQKPRSVFNAASLAY+GDCIY
Sbjct: 61  QIVSDLLNRRNRSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 180
           ELYARRHFLFP                                      DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTGAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNN 215
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESN+
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNS 240

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BLAST of Carg06437 vs. NCBI nr
Match: XP_004146824.1 (PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus] >KGN59823.1 hypothetical protein Csa_3G848810 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 180/238 (75.63%), Postives = 189/238 (79.41%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M+TLSATSTSIVASWDTQQRL+YNPNAPRNPNKKPKS S SPTSQ+TGNA LTATNIRTN
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAILTATNIRTN 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLL RR+P S EG K  EPDGLYLGY+QWLP+P KVQKPRSVFNAASLAY+GDCIY
Sbjct: 61  QIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 180
           ELYARRHFLFP                                      DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEES 202
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQ+I EES
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 238

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BLAST of Carg06437 vs. TAIR10
Match: AT3G13740.1 (Ribonuclease III family protein)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 117/239 (48.95%), Postives = 144/239 (60.25%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M+ LSA+ST + A+ DTQ RL YNPNAPR   K P   S  P                  
Sbjct: 1   MVILSASST-VRAALDTQPRLPYNPNAPRKVKKIPNGNSFLP-------PXXXXXXXXXX 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
              +DLLKR  P S E   +V+ D  Y+GYE W P+P K++KPRSVFN ASLA++GD IY
Sbjct: 61  XXXADLLKR--PSSKE--ITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 180
           ELYARRHFLFP                                      DILRWGKN+G 
Sbjct: 121 ELYARRHFLFPPLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLG- 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESN 203
           S++TRT++RAG AVYN+ASSLETLIGYLYL N KRL++IM+KLGFS+DSS +++ EE+N
Sbjct: 181 SARTRTRRRAGNAVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETN 226

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BLAST of Carg06437 vs. TAIR10
Match: AT1G55140.1 (Ribonuclease III family protein)

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41
Identity = 107/214 (50.00%), Postives = 127/214 (59.35%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M  LSA+ST + A+ DTQ +L YNPNAPRN  K     S  P S  + ++   ATN+  +
Sbjct: 1   MAILSASSTIVRAALDTQPKLRYNPNAPRNVKKNSNLSSFVPPSSPSSSS--PATNLSVS 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
             VSDLLKR  P S +       D   +GYE+W P+P KV+KPRSVFNAASLAY+GD IY
Sbjct: 61  --VSDLLKR--PASKDIGDGF--DDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 178
           E+YARRHFLFP                                      DILRWGKNVG 
Sbjct: 121 EIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVG- 180

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BLAST of Carg06437 vs. Swiss-Prot
Match: sp|P74327|MRNC_SYNY3 (Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=mrnC PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 39/119 (32.77%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 96  NPAKVQKPRSVFNAASLAYMGDCIYELYARRHFLFP------------------------ 155
           NPA     +S+ +  +LAY+GD ++ELY R  +LFP                        
Sbjct: 15  NPADAPAVQSL-SPVALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQIL 74

Query: 156 -------TDILRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM 184
                  TD  +     G ++ T T +RA   +Y  AS LETL+GYLYL + +RLDE++
Sbjct: 75  TTLLPQLTDPEKEWVRRGRNAATSTSRRANPELYQAASGLETLLGYLYLRDARRLDELL 132

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BLAST of Carg06437 vs. Swiss-Prot
Match: sp|Q8DLQ0|MRNC_THEEB (Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=mrnC PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 35/112 (31.25%), Postives = 46/112 (41.07%), Query Frame = 0


Query: 110 ASLAYMGDCIYELYARRHFLFP-----------------------------------TDI 169
           A+LAY GD +YEL+ R  FL P                                     I
Sbjct: 23  AALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYMDFLWEYCTETERSI 82

Query: 170 LRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKL 187
            R G+N  +       KR  A +Y +A+  E L+GYLYL N +RL EI + L
Sbjct: 83  FRQGRNAAADG----PKRVAAKIYRQATGFEALLGYLYLTNPQRLQEIFQLL 130

[Close]

BLAST of Carg06437 vs. Swiss-Prot
Match: sp|Q05370|MRNC_SYNP1 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) OX=32048 GN=mrnC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.4e-04
Identity = 31/112 (27.68%), Postives = 46/112 (41.07%), Query Frame = 0


Query: 110 ASLAYMGDCIYELYARRHFLFPTD-----------------------------------I 169
           ++LAY GD +YEL+ R  FL P                                     I
Sbjct: 25  SALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILWPHCTAAELTI 84

Query: 170 LRWGKNVGSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKL 187
            R G+N  +       KR  A +Y +A+  E L+GYLYL + +RL +++  L
Sbjct: 85  FRQGRNAAADG----PKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132

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BLAST of Carg06437 vs. TrEMBL
Match: tr|A0A1S3BIG3|A0A1S3BIG3_CUCME (uncharacterized protein LOC103490018 OS=Cucumis melo OX=3656 GN=LOC103490018 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.7e-90
Identity = 186/251 (74.10%), Postives = 198/251 (78.88%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M+TLSATSTSIVASWDTQQRL+YNPNAPRNPNKKP SLS SPTSQSTGNATLTATNIRT+
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSPSPTSQSTGNATLTATNIRTD 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLL RR+  S EG K  EPDGLYLGY+QWLP+P KVQKPRSVFNAASLAY+GDCIY
Sbjct: 61  QIVSDLLNRRNRSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 180
           ELYARRHFLFP                                      DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTGAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNN 215
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQLI EESN+
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQLISEESNS 240

[Close]

BLAST of Carg06437 vs. TrEMBL
Match: tr|A0A0A0LDF2|A0A0A0LDF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848810 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 7.0e-89
Identity = 180/238 (75.63%), Postives = 189/238 (79.41%), Query Frame = 0


Query: 1   MLTLSATSTSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTN 60
           M+TLSATSTSIVASWDTQQRL+YNPNAPRNPNKKPKS S SPTSQ+TGNA LTATNIRTN
Sbjct: 1   MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAILTATNIRTN 60

Query: 61  QIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIY 120
           QIVSDLL RR+P S EG K  EPDGLYLGY+QWLP+P KVQKPRSVFNAASLAY+GDCIY
Sbjct: 61  QIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDCIY 120

Query: 121 ELYARRHFLFP-------------------------------------TDILRWGKNVGS 180
           ELYARRHFLFP                                      DILRWGKNVGS
Sbjct: 121 ELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNVGS 180

Query: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEES 202
           SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIM+KLGFSTDSSLQ+I EES
Sbjct: 181 SSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 238

[Close]

BLAST of Carg06437 vs. TrEMBL
Match: tr|A0A2P5BH70|A0A2P5BH70_PARAD (Ribonuclease III domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_239230 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.0e-56
Identity = 132/242 (54.55%), Postives = 156/242 (64.46%), Query Frame = 0


Query: 14  SWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIRTNQIVSDLLKRRSPG 73
           SWDTQQ L+YNPNAP+NPNK P S   + +       TLTA+  R  + +S+LLKR  P 
Sbjct: 23  SWDTQQMLSYNPNAPKNPNKTPTS---TASKNLPPTVTLTASTARMVESISELLKR--PX 82

Query: 74  SNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDCIYELYARRHFLFP-- 133
                ++ + + LYLGYE+WLP+P KV+KPRSV+NAASLAY+GDCIYELYARRHFLFP  
Sbjct: 83  XXXQGETNKRNELYLGYERWLPSPPKVKKPRSVYNAASLAYLGDCIYELYARRHFLFPPL 142

Query: 134 -----------------------------------TDILRWGKNVGSSSKTRTKKRAGAA 193
                                               D+LRWGKNVG S++TRTKKR GAA
Sbjct: 143 NIEEFNDRVTAVVRCEAQDALLQKLLSDNYLSEQERDVLRWGKNVG-SARTRTKKRVGAA 202

Query: 194 VYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEESNNELPSSFPLGDQPS 219
           VYNRASSLETLIGYLYL N KRLDEIM K+GFSTDSS+ LI EESN +       G +PS
Sbjct: 203 VYNRASSLETLIGYLYLTNTKRLDEIMVKVGFSTDSSMPLILEESNGKSTIVCEEGIEPS 258

[Close]

BLAST of Carg06437 vs. TrEMBL
Match: tr|A0A2I4FLU1|A0A2I4FLU1_9ROSI (uncharacterized protein LOC109000221 OS=Juglans regia OX=51240 GN=LOC109000221 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 132/244 (54.10%), Postives = 152/244 (62.30%), Query Frame = 0


Query: 1   MLTLSATS--TSIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTATNIR 60
           M TLS  S   ++ ASWDTQQRL+YNPNAPR P   P                      R
Sbjct: 1   MQTLSVPSPRVAVRASWDTQQRLSYNPNAPRKP---PXXXXXXXXXXXXXXXXXXVATTR 60

Query: 61  TNQIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYMGDC 120
           +   V DLLKR  P S E  + VE D  Y+GYE+WLP+P KVQKPRS FNAASLAY+GDC
Sbjct: 61  SEPSVLDLLKR--PSSVE--EIVERDECYMGYERWLPSPPKVQKPRSAFNAASLAYIGDC 120

Query: 121 IYELYARRHFLFP-------------------------------------TDILRWGKNV 180
           IYELYARRHFLFP                                      D+LRWGKN+
Sbjct: 121 IYELYARRHFLFPPLNIEEYNDRVTAVVRCEAQDALLQKLLSEKYLSEEERDVLRWGKNI 180

Query: 181 GSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMKKLGFSTDSSLQLIPEES 206
           G S+KTRTK+RAGAAVYNRASSLETL+GYLYL NVKRL+EIM KLGF+TDSS+QLI EE+
Sbjct: 181 G-SAKTRTKRRAGAAVYNRASSLETLVGYLYLKNVKRLEEIMLKLGFTTDSSMQLILEEA 236

[Close]

BLAST of Carg06437 vs. TrEMBL
Match: tr|A0A2P4HEJ9|A0A2P4HEJ9_QUESU (Mini-ribonuclease 3 OS=Quercus suber OX=58331 GN=CFP56_25046 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.8e-53
Identity = 133/256 (51.95%), Postives = 156/256 (60.94%), Query Frame = 0


Query: 1   MLTLSATST-----SIVASWDTQQRLTYNPNAPRNPNKKPKSLSVSPTSQSTGNATLTAT 60
           M TLS+  +     ++ ASWDTQ RLTYNPNAPR P K P +   + T Q     T+T T
Sbjct: 1   MQTLSSVPSLRVRVAVRASWDTQPRLTYNPNAPRKPPKNPNTTLKAKTPQPQTPPTVTLT 60

Query: 61  NIRTNQIVSDLLKRRSPGSNEGSKSVEPDGLYLGYEQWLPNPAKVQKPRSVFNAASLAYM 120
                   +DLLKR     + G + VEPD  YLGYE+WLP+P KVQKPRSVFNAASLAY+
Sbjct: 61  -----VPTADLLKR-----STGEEKVEPDEFYLGYERWLPSPPKVQKPRSVFNAASLAYI 120

Query: 121 GDCIYELYARRHFLFP-------------------------------------TDILRWG 180
           GDCIYELYARRHFLFP                                      ++LRWG
Sbjct: 121 GDCIYELYARRHFLFPPLNIEEFNDRVTAVVRCEAQDALLQKLLNDNYLSEEERNVLRWG 180

Query: 181 KNVGSSSKTRTKKRAGAAVYNRASSLETL----------IGYLYLNNVKRLDEIMKKLGF 205
           KN+G S+KTRTKKRAGAAVYNRASSLETL          +GYLYL NVKRL+EIM KLGF
Sbjct: 181 KNIG-SAKTRTKKRAGAAVYNRASSLETLVRSMLLCVLQVGYLYLTNVKRLEEIMLKLGF 240

The following BLAST results are available for this feature:

BLAST of Carg06437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526365.1	6.2e-105	81.23	uncharacterized protein LOC111789879 [Cucurbita pepo subsp. pepo]	[more]
XP_022980704.1	4.5e-103	80.46	uncharacterized protein LOC111479993 [Cucurbita maxima]	[more]
XP_022956334.1	2.2e-102	79.69	uncharacterized protein LOC111458065 [Cucurbita moschata]	[more]
XP_008447605.1	2.5e-90	74.10	PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo]	[more]
XP_004146824.1	1.1e-88	75.63	PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus] >KGN59823.1 hy...	[more]

BLAST of Carg06437 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13740.1	1.1e-47	48.95	Ribonuclease III family protein	[more]
AT1G55140.1	1.6e-41	50.00	Ribonuclease III family protein	[more]

BLAST of Carg06437 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P74327\|MRNC_SYNY3	1.3e-08	32.77	Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 G...	[more]
sp\|Q8DLQ0\|MRNC_THEEB	1.7e-05	31.25	Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=...	[more]
sp\|Q05370\|MRNC_SYNP1	9.4e-04	27.68	Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) OX=32048 GN=mrnC PE=3...	[more]

BLAST of Carg06437 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIG3\|A0A1S3BIG3_CUCME	1.7e-90	74.10	uncharacterized protein LOC103490018 OS=Cucumis melo OX=3656 GN=LOC103490018 PE=...	[more]
tr\|A0A0A0LDF2\|A0A0A0LDF2_CUCSA	7.0e-89	75.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848810 PE=4 SV=1	[more]
tr\|A0A2P5BH70\|A0A2P5BH70_PARAD	6.0e-56	54.55	Ribonuclease III domain containing protein OS=Parasponia andersonii OX=3476 GN=P...	[more]
tr\|A0A2I4FLU1\|A0A2I4FLU1_9ROSI	2.1e-53	54.10	uncharacterized protein LOC109000221 OS=Juglans regia OX=51240 GN=LOC109000221 P...	[more]
tr\|A0A2P4HEJ9\|A0A2P4HEJ9_QUESU	4.8e-53	51.95	Mini-ribonuclease 3 OS=Quercus suber OX=58331 GN=CFP56_25046 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004525	ribonuclease III activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR036389	RNase_III_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004525	ribonuclease III activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06437-RA	Carg06437-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	G3DSA:1.10.1520.10		coord: 133..195 e-value: 9.3E-15 score: 56.1
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	G3DSA:1.10.1520.10		coord: 97..132 e-value: 2.0E-7 score: 32.3
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	SSF69065	RNase III domain-like	coord: 105..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..224
None	No IPR available	PANTHER	PTHR34276	FAMILY NOT NAMED	coord: 7..131 coord: 133..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06437	Cla012614	Watermelon (97103) v1	carwmB0120
Carg06437	Csa3G848810	Cucumber (Chinese Long) v2	carcuB0124
Carg06437	MELO3C013052	Melon (DHL92) v3.5.1	carmeB0125
Carg06437	ClCG07G013710	Watermelon (Charleston Gray)	carwcgB0121
Carg06437	CSPI03G41460	Wild cucumber (PI 183967)	carcpiB0129
Carg06437	Cucsa.341210	Cucumber (Gy14) v1	carcgyB0144
Carg06437	CmaCh14G012650	Cucurbita maxima (Rimu)	carcmaB0154
Carg06437	CmoCh14G013000	Cucurbita moschata (Rifu)	carcmoB0163
Carg06437	Lsi07G005660	Bottle gourd (USVL1VR-Ls)	carlsiB109
Carg06437	Cp4.1LG03g14370	Cucurbita pepo (Zucchini)	carcpeB0176
Carg06437	CsGy3G038910	Cucumber (Gy14) v2	carcgybB0124
Carg06437	MELO3C013052.2	Melon (DHL92) v3.6.1	carmedB0128
Carg06437	CsaV3_3G043900	Cucumber (Chinese Long) v3	carcucB0134
Carg06437	Cla97C07G140530	Watermelon (97103) v2	carwmbB0126
Carg06437	Bhi01G002116	Wax gourd	carwgoB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06437	Watermelon (97103) v2	carwmbB0123
Carg06437	Watermelon (97103) v2	carwmbB0124
Carg06437	Watermelon (97103) v2	carwmbB0129
Carg06437	Wax gourd	carwgoB0147
Carg06437	Wax gourd	carwgoB0151
Carg06437	Silver-seed gourd	carcarB139
Carg06437	Silver-seed gourd	carcarB140
Carg06437	Silver-seed gourd	carcarB145
Carg06437	Cucumber (Gy14) v2	carcgybB0128
Carg06437	Cucumber (Gy14) v1	carcgyB0145
Carg06437	Cucurbita maxima (Rimu)	carcmaB0155
Carg06437	Cucurbita maxima (Rimu)	carcmaB0157
Carg06437	Cucurbita maxima (Rimu)	carcmaB0160
Carg06437	Cucurbita moschata (Rifu)	carcmoB0164
Carg06437	Cucurbita moschata (Rifu)	carcmoB0166
Carg06437	Cucurbita moschata (Rifu)	carcmoB0169
Carg06437	Cucurbita pepo (Zucchini)	carcpeB0171
Carg06437	Cucurbita pepo (Zucchini)	carcpeB0173
Carg06437	Cucurbita pepo (Zucchini)	carcpeB0175
Carg06437	Wild cucumber (PI 183967)	carcpiB0134
Carg06437	Cucumber (Chinese Long) v2	carcuB0129
Carg06437	Cucumber (Chinese Long) v3	carcucB0138
Carg06437	Bottle gourd (USVL1VR-Ls)	carlsiB105
Carg06437	Melon (DHL92) v3.5.1	carmeB0120
Carg06437	Melon (DHL92) v3.6.1	carmedB0123
Carg06437	Watermelon (Charleston Gray)	carwcgB0119
Carg06437	Watermelon (97103) v1	carwmB0119