Cucsa.340980 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.340980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEpidermal patterning factor-like protein
Locationscaffold03356 : 3365553 .. 3365771 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTTAAAGGTGTTAAAGAAGAAGAATTCTATAGAGGTATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCACGTAGGGGTCCAATACACTAACTATGAACCCGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGA

mRNA sequence

GCTGTTAAAGGTGTTAAAGAAGAAGAATTCTATAGAGGTATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCACGTAGGGGTCCAATACACTAACTATGAACCCGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGA

Coding sequence (CDS)

GCTGTTAAAGGTGTTAAAGAAGAAGAATTCTATAGAGGTATGAGGAAAATAGGGTCAAGTCCACCCAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACAACCACCAACAGGCGCAGCCACGTAGGGGTCCAATACACTAACTATGAACCCGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGA

Protein sequence

AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCGPSFYSP*
Homology
[Close]
BLAST of Cucsa.340980 vs. Swiss-Prot
Match: EPFL3_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-16
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 7   EEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCG 66
           +EE  +  R+IGS PPSCE KCYGC PCEAIQ PT ++   H+   Y NY+PEGW+C C 
Sbjct: 47  KEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISS-IPHLSPHYANYQPEGWRCHCP 106

Query: 67  P 68
           P
Sbjct: 107 P 106

[Close]
BLAST of Cucsa.340980 vs. Swiss-Prot
Match: EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.7e-11
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 1 

Query: 16  KIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGV-------------------QYTNY 73
           ++GS+PPSC ++C  C PC AIQVPT   R     V                   QY+NY
Sbjct: 47  RLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNY 106

[Close]
BLAST of Cucsa.340980 vs. Swiss-Prot
Match: EPFL4_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-06
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1 

Query: 18  GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCGPSFYSP 73
           GSSPP+C  KC  C PC+ + VP        +      Y PE W+CKCG   + P
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPL-----EYYPEAWRCKCGNKLFMP 109

[Close]
BLAST of Cucsa.340980 vs. TrEMBL
Match: A0A0A0LCQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847610 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.0e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 60
          AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG
Sbjct: 8  AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 67

Query: 61 WKCKCGPSFYSP 73
          WKCKCGPSFYSP
Sbjct: 68 WKCKCGPSFYSP 79

[Close]
BLAST of Cucsa.340980 vs. TrEMBL
Match: A0A0B2RE08_GLYSO (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Glycine soja GN=glysoja_022383 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-28
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 3   KGVKEEEFY-RGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGW 62
           KG+ EE +Y RG+ KIGSSPPSCEHKCYGC PCEAIQVP+T++RRSH+G+QYTNYEPE W
Sbjct: 60  KGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRRSHLGLQYTNYEPESW 119

Query: 63  KCKCGPSFYSP 73
           KCKCGPS YSP
Sbjct: 120 KCKCGPSLYSP 130

[Close]
BLAST of Cucsa.340980 vs. TrEMBL
Match: K7M960_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G025200 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-28
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 3   KGVKEEEFY-RGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGW 62
           KG+ EE +Y RG+ KIGSSPPSCEHKCYGC PCEAIQVP+T++RRSH+G+QYTNYEPE W
Sbjct: 60  KGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRRSHLGLQYTNYEPESW 119

Query: 63  KCKCGPSFYSP 73
           KCKCGPS YSP
Sbjct: 120 KCKCGPSLYSP 130

[Close]
BLAST of Cucsa.340980 vs. TrEMBL
Match: A0A0S3SZJ6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G202600 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 

Query: 7   EEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCG 66
           +E + RG+ KIGSSPPSCEHKCYGC+PCEAIQVP+T+ RRSH+G+QY NYEPE WKCKCG
Sbjct: 89  QEAYDRGVSKIGSSPPSCEHKCYGCVPCEAIQVPSTSTRRSHLGIQYANYEPESWKCKCG 148

Query: 67  PSFYSP 73
           PSFYSP
Sbjct: 149 PSFYSP 154

[Close]
BLAST of Cucsa.340980 vs. TrEMBL
Match: A0A0L9TIG1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan1082s003300 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 

Query: 7   EEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCG 66
           +E + RG+ KIGSSPPSCEHKCYGC+PCEAIQVP+T+ RRSH+G+QY NYEPE WKCKCG
Sbjct: 89  QEAYDRGVSKIGSSPPSCEHKCYGCVPCEAIQVPSTSTRRSHLGIQYANYEPESWKCKCG 148

Query: 67  PSFYSP 73
           PSFYSP
Sbjct: 149 PSFYSP 154

[Close]
BLAST of Cucsa.340980 vs. TAIR10
Match: AT3G13898.1 (AT3G13898.1 unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-17
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 7   EEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCG 66
           +EE  +  R+IGS PPSCE KCYGC PCEAIQ PT ++   H+   Y NY+PEGW+C C 
Sbjct: 47  KEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISS-IPHLSPHYANYQPEGWRCHCP 106

Query: 67  P 68
           P
Sbjct: 107 P 106

[Close]
BLAST of Cucsa.340980 vs. TAIR10
Match: AT5G10310.1 (AT5G10310.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-12
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 1 

Query: 16  KIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGV-------------------QYTNY 73
           ++GS+PPSC ++C  C PC AIQVPT   R     V                   QY+NY
Sbjct: 47  RLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNY 106

[Close]
BLAST of Cucsa.340980 vs. TAIR10
Match: AT4G14723.1 (AT4G14723.1 BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1))

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1 

Query: 18  GSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCGPSFYSP 73
           GSSPP+C  KC  C PC+ + VP        +      Y PE W+CKCG   + P
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPL-----EYYPEAWRCKCGNKLFMP 109

[Close]
BLAST of Cucsa.340980 vs. NCBI nr
Match: gi|449458149|ref|XP_004146810.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 60
           AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG
Sbjct: 45  AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 104

Query: 61  WKCKCGPSFYSP 73
           WKCKCGPSFYSP
Sbjct: 105 WKCKCGPSFYSP 116

[Close]
BLAST of Cucsa.340980 vs. NCBI nr
Match: gi|700204667|gb|KGN59800.1| (hypothetical protein Csa_3G847610 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 60
          AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG
Sbjct: 8  AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 67

Query: 61 WKCKCGPSFYSP 73
          WKCKCGPSFYSP
Sbjct: 68 WKCKCGPSFYSP 79

[Close]
BLAST of Cucsa.340980 vs. NCBI nr
Match: gi|659093602|ref|XP_008447616.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-37
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   AVKGVKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEG 60
           AVKG+KEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSH+GVQYTNYEPEG
Sbjct: 44  AVKGIKEEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHIGVQYTNYEPEG 103

Query: 61  WKCKCGPSFYSP 73
           WKCKCGPSFYSP
Sbjct: 104 WKCKCGPSFYSP 115

[Close]
BLAST of Cucsa.340980 vs. NCBI nr
Match: gi|955371936|ref|XP_014623502.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Glycine max])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-28
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 3   KGVKEEEFY-RGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGW 62
           KG+ EE +Y RG+ KIGSSPPSCEHKCYGC PCEAIQVP+T++RRSH+G+QYTNYEPE W
Sbjct: 60  KGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRRSHLGLQYTNYEPESW 119

Query: 63  KCKCGPSFYSP 73
           KCKCGPS YSP
Sbjct: 120 KCKCGPSLYSP 130

[Close]
BLAST of Cucsa.340980 vs. NCBI nr
Match: gi|951031833|ref|XP_014515251.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Vigna radiata var. radiata])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 

Query: 7   EEEFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCG 66
           +E + RG+ KIGSSPPSCEHKCYGC+PCEAIQVP+T+ RRSH+G+QY NYEPE WKCKCG
Sbjct: 57  QEAYDRGVSKIGSSPPSCEHKCYGCVPCEAIQVPSTSTRRSHLGIQYANYEPESWKCKCG 116

Query: 67  PSFYSP 73
           PSFYSP
Sbjct: 117 PSFYSP 122

The following BLAST results are available for this feature:
BLAST of Cucsa.340980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EPFL3_ARATH7.7e-1657.38EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=1... [more]
EPFL1_ARATH9.7e-1140.79EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=1... [more]
EPFL4_ARATH2.5e-0640.00EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1... [more]
BLAST of Cucsa.340980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCQ8_CUCSA5.0e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G847610 PE=4 SV=1[more]
A0A0B2RE08_GLYSO2.7e-2878.87EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Glycine soja GN=glysoja_022383 PE=... [more]
K7M960_SOYBN2.7e-2878.87Uncharacterized protein OS=Glycine max GN=GLYMA_15G025200 PE=4 SV=1[more]
A0A0S3SZJ6_PHAAN1.4e-2778.79Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G202600 PE=... [more]
A0A0L9TIG1_PHAAN1.4e-2778.79Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan1082s003300 PE=4 SV=... [more]
BLAST of Cucsa.340980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13898.14.3e-1757.38 unknown protein[more]
AT5G10310.15.5e-1240.79 unknown protein[more]
AT4G14723.11.4e-0740.00 BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:A... [more]
BLAST of Cucsa.340980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458149|ref|XP_004146810.1|7.1e-38100.00PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus][more]
gi|700204667|gb|KGN59800.1|7.1e-38100.00hypothetical protein Csa_3G847610 [Cucumis sativus][more]
gi|659093602|ref|XP_008447616.1|1.2e-3797.22PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo][more]
gi|955371936|ref|XP_014623502.1|3.9e-2878.87PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Glycine max][more]
gi|951031833|ref|XP_014515251.1|1.9e-2778.79PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Vigna radiata var. radiat... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340980.1Cucsa.340980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33109FAMILY NOT NAMEDcoord: 7..72
score: 1.8
NoneNo IPR availablePANTHERPTHR33109:SF14EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 3coord: 7..72
score: 1.8
NoneNo IPR availablePFAMPF17181EPFcoord: 16..72
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.340980Cla012592Watermelon (97103) v1cgywmB611
Cucsa.340980Csa3G847610Cucumber (Chinese Long) v2cgycuB478
Cucsa.340980MELO3C013075Melon (DHL92) v3.5.1cgymeB556
Cucsa.340980ClCG07G013920Watermelon (Charleston Gray)cgywcgB589
Cucsa.340980CSPI03G41220Wild cucumber (PI 183967)cgycpiB504
Cucsa.340980CmaCh14G012500Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.340980CmaCh01G000500Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.340980CmoCh01G000550Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.340980CmoCh14G012840Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.340980Lsi07G005940Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.340980Cp4.1LG02g17360Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.340980Cp4.1LG03g14560Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.340980MELO3C013075.2Melon (DHL92) v3.6.1cgymedB557
Cucsa.340980CsaV3_3G043680Cucumber (Chinese Long) v3cgycucB523
Cucsa.340980Cla97C07G140700Watermelon (97103) v2cgywmbB589
Cucsa.340980Bhi01G002138Wax gourdcgywgoB681
Cucsa.340980Carg04319Silver-seed gourdcarcgyB0246
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340980Melon (DHL92) v3.6.1cgymedB554
Cucsa.340980Melon (DHL92) v3.6.1cgymedB561
Cucsa.340980Silver-seed gourdcarcgyB0144
Cucsa.340980Cucumber (Chinese Long) v3cgycucB528
Cucsa.340980Watermelon (97103) v2cgywmbB592
Cucsa.340980Wax gourdcgywgoB691
Cucsa.340980Cucumber (Gy14) v1cgycgyB147
Cucsa.340980Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.340980Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.340980Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.340980Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.340980Wild cucumber (PI 183967)cgycpiB511
Cucsa.340980Cucumber (Chinese Long) v2cgycuB485
Cucsa.340980Melon (DHL92) v3.5.1cgymeB553
Cucsa.340980Melon (DHL92) v3.5.1cgymeB560
Cucsa.340980Watermelon (Charleston Gray)cgywcgB578
Cucsa.340980Watermelon (97103) v1cgywmB608
Cucsa.340980Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.340980Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.340980Bottle gourd (USVL1VR-Ls)cgylsiB548