Cucsa.340460 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.340460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03356 : 2900048 .. 2900547 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTGATCGGCGACACGAAGAACGAGATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGAACGTTGAATACTACAATAGGTTTTCTATTTATTACCGATCAAAACTAGCAAAGCATGTATGATAATTTTGAACTCTCTTGTTACTTTTTCTTTTtCCTTCGTGATTAGTTTTCTTTTAGTTATTATTCTTACAGTAATGGATCAATTGTAATGAAATTGAATTCATGAATCGTTTATAATGAATATCAATTGCAAACATAGTTTGATGGCTTTCGATGATGTTTATCAAAATAGCAAACGTAATTTTATGACTTTTAATAA

mRNA sequence

AGTTGATCGGCGACACGAAGAACGAGATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGAACGTTGAATACTACAATAGGTTTTCTATTTATTACCGATCAAAACTAGCAAAGCATGTATGATAATTTTGAACTCTCTTGTTACTTTTTCTTTTTCCTTCGTGATTAGTTTTCTTTTAGTTATTATTCTTACAGTAATGGATCaattgtaatgaaattgaattcatgaatcgtttataatgaatatcaattgcaaacatagtttgatggctttcgatgatgtttatcaaaatAGCAAACGTAATTTTATGACTTTTAATAA

Coding sequence (CDS)

ATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

Protein sequence

MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC*
Homology
[Close]
BLAST of Cucsa.340460 vs. TrEMBL
Match: A0A0A0LG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1   MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG 60
           MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG
Sbjct: 41  MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG 100

Query: 61  GGAFVNKRHC 71
           GGAFVNKRHC
Sbjct: 101 GGAFVNKRHC 110

[Close]
BLAST of Cucsa.340460 vs. NCBI nr
Match: gi|700204619|gb|KGN59752.1| (hypothetical protein Csa_3G842740 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1   MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG 60
           MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG
Sbjct: 41  MEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHG 100

Query: 61  GGAFVNKRHC 71
           GGAFVNKRHC
Sbjct: 101 GGAFVNKRHC 110

The following BLAST results are available for this feature:
BLAST of Cucsa.340460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG95_CUCSA2.7e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842740 PE=4 SV=1[more]
BLAST of Cucsa.340460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204619|gb|KGN59752.1|3.9e-33100.00hypothetical protein Csa_3G842740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340460.1Cucsa.340460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.340460Cla017166Watermelon (97103) v1cgywmB609
Cucsa.340460Csa3G842740Cucumber (Chinese Long) v2cgycuB478
Cucsa.340460MELO3C026611Melon (DHL92) v3.5.1cgymeB557
Cucsa.340460ClCG10G013420Watermelon (Charleston Gray)cgywcgB579
Cucsa.340460CSPI03G40700Wild cucumber (PI 183967)cgycpiB504
Cucsa.340460Lsi03G013040Bottle gourd (USVL1VR-Ls)cgylsiB551
Cucsa.340460MELO3C026611.2Melon (DHL92) v3.6.1cgymedB558
Cucsa.340460CsaV3_3G043210Cucumber (Chinese Long) v3cgycucB523
Cucsa.340460Cla97C10G196210Watermelon (97103) v2cgywmbB582
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340460Melon (DHL92) v3.6.1cgymedB559
Cucsa.340460Wax gourdcgywgoB676
Cucsa.340460Cucurbita moschata (Rifu)cgycmoB0928
Cucsa.340460Melon (DHL92) v3.5.1cgymeB558