CsaV3_3G043210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 35083493 .. 35084395 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGTATAGAAATAAGAAAAGATAAAAACTAGCTTAAGAAAAGAGAGATTGGAGGAGTACCATGTTCATAAGCAACGGAGGCTCAAGGGTTTTGGAAGTATCCCAAGAAGCTTTATCCAAATAGAACTTCACATCCATTATTGACAACGATGTAGATATTGATTCAAACCAAGACGTGGCTGCCATGGCTGCTCCTTTCAATCAATTCCACTCTCCCCTAATTTCTTTCAGCCAATAATTCACTTCAAACCTTCCTTCCATATTTAATTTAGTTTGGAATATCATATCCACCAATATAATTTCCAAAAAATGGGACTCGACGACTGGGAACTCCTCGATTGCCATGAAGACCATGATCAAGAGAAAAGCAGGCCGCACGAAAACGTAGTAATTTCCGGCCAGAAGTTGATCGGCGACACGAAGAACGAGATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGAACGTTGAATACTACAATAGGTTTTCTATTTATTACCGATCAAAACTAGCAAAGCATGTATGATAATTTTGAACTCTCTTGTTACTTTTTTTTTTCTTTTCTTGGTGATTAGTTTTCTATTAGTTATTATTCTTACAGTAATGGATCAATTGTAATGAAATTGAATTCATGGGTCGTTTATAATGAATATCAATTGCAAACATAGTTTGATGGCTTTCGATGATGTTTATCAAAATAGCAAACGTAATTTTATGACTTTT

mRNA sequence

ATGGGACTCGACGACTGGGAACTCCTCGATTGCCATGAAGACCATGATCAAGAGAAAAGCAGGCCGCACGAAAACGTAGTAATTTCCGGCCAGAAGTTGATCGGCGACACGAAGAACGAGATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

Coding sequence (CDS)

ATGGGACTCGACGACTGGGAACTCCTCGATTGCCATGAAGACCATGATCAAGAGAAAAGCAGGCCGCACGAAAACGTAGTAATTTCCGGCCAGAAGTTGATCGGCGACACGAAGAACGAGATGGAAGCGGTCGCGGAGTTTGATGTGGAGGAAGAGGAAAAGGTGGATTCAAGAGGAGGGATGGATATGGCGATGGAGAAAAGGAAACAATGGGGGAGAACGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

Protein sequence

MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGGMDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Homology
[Close]
BLAST of CsaV3_3G043210 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_3G842740 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 3.1e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60
           MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 111
           MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 110

[Close]
BLAST of CsaV3_3G043210 vs. TrEMBL
Match: tr|A0A0A0LG95|A0A0A0LG95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.1e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60
           MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 111
           MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 110

The following BLAST results are available for this feature:
BLAST of CsaV3_3G043210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59752.13.1e-57100.00hypothetical protein Csa_3G842740 [Cucumis sativus][more]
BLAST of CsaV3_3G043210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G043210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G043210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LG95|A0A0A0LG95_CUCSA2.1e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G043210.1CsaV3_3G043210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G043210CSPI03G40700Wild cucumber (PI 183967)cpicucB145
CsaV3_3G043210Cucsa.340460Cucumber (Gy14) v1cgycucB523
CsaV3_3G043210Cla017166Watermelon (97103) v1cucwmB208
CsaV3_3G043210MELO3C026611Melon (DHL92) v3.5.1cucmeB212
CsaV3_3G043210ClCG10G013420Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G043210Lsi03G013040Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G043210MELO3C026611.2Melon (DHL92) v3.6.1cucmedB205
CsaV3_3G043210Cla97C10G196210Watermelon (97103) v2cucwmbB187
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G043210Cucumber (Gy14) v2cgybcucB117
CsaV3_3G043210Cucurbita maxima (Rimu)cmacucB0293
CsaV3_3G043210Cucurbita moschata (Rifu)cmocucB0277
CsaV3_3G043210Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G043210Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G043210Wax gourdcucwgoB241