Cucsa.340220 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Gibberellin-regulated family protein
Location	scaffold03356 : 2711897 .. 2712831 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTTTCTCCCTATATTTTCTCTCTCTCTCTCTCTCAATTCTATATATAATTTAGTTTTGAAATTATGAGAAGGAAGCAAGTAATAGAGATACTGTTGTTTGTAGTAATGTTGCTGAATTGTGTTCTCTTAGTACACAATCTTGTAATAACCCTTTCTCCTAACTCCATTTTtATTTtATTTGATTTCTTACTACCAATAATTATATATTTAGGGGTTTTtCTTtCTTTTTTTGTACATATATATATATGAATCCTGTTGGTTTGGTTCATTGTGTTTTATAGGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTTCCAATTATTCCAATCCCATGGTATTTTTCTACATTGTAATATATGGTGAATCCATCCATTGATTGTCTTTTGTATATACAAAAAGTTGGAAATTAATGTATGTAACTTCCTTTTCCCATTTTTTtCCAAATTTCAGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGGTAAAAACTAAAAACTAATAATGAAAGGATTTTTCATGTGGTCAATTATTTTAAACTAAGTATTTATGCAGAATGTGGGGCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGTCCTTAATTACTTTCATTTCCCAACTCCCTAAAAAAAAAaCCATCATTAAGTTACTTTCTAATCTCATTTTCTGAACGTCCCTATTTTTTCGTTATACTTCTAAAAAGTGATGGTTTTGACCTTTCATGGAGGGTGACTTCTTAAAAGTATATATTATATGGAAGGGTTATTGTTGTTGTCTACA

mRNA sequence

tctctctctctctctttctccctatattttctctctctctctctctcAATTCTATATATAATTTAGTTTTGAAATTATGAGAAGGAAGCAAGTAATAGAGATACTGTTGTTTGTAGTAATGTTGCTGAATTGTGTTCTCTTAGTACACAATCTTGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTTCCAATTATTCCAATCCCATGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGAATGTGGGGCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGTCCTTAATTACTTTCATTTCCCAACTCCCTAAAAAAAAAACCATCATTAAGTTACTTTCTAATCTCATTTTCTGAACGTCCCTATTTTTTCGTTATACTTCTAAAAAGTGATGGTTTTGACCTTTCATGGAGGGTGACTTCTTAAAAGTATATATTATATGGAAGGGTTATTGTTGTTGTCTACA

Coding sequence (CDS)

ATGAGAAGGAAGCAAGTAATAGAGATACTGTTGTTTGTAGTAATGTTGCTGAATTGTGTTCTCTTAGTACACAATCTTGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTTCCAATTATTCCAATCCCATGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGAATGTGGGGCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGCTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGTCCTTAA

Protein sequence

MRRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP*

Homology

[Close]

BLAST of Cucsa.340220 vs. Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.3e-36
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 7   IEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGR 66
           + I+LFV+++   V L  N           Q     +N ++GV+EG L PQ+C  +CT R
Sbjct: 5   MSIVLFVLLV---VFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYR 64

Query: 67  CSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           CSKT++KKPCMFFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 65  CSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of Cucsa.340220 vs. Swiss-Prot
Match: GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-29
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 52  GSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +CG +CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ CPCYN WKT++
Sbjct: 36  GSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQ 95

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 96  GGPKCP 101

[Close]

BLAST of Cucsa.340220 vs. Swiss-Prot
Match: GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 52  GSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           G L+PQ+C ++C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQTCPCYN WKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 112 GGPKCP 118
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Cucsa.340220 vs. Swiss-Prot
Match: GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-27
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 1


Query: 11  LFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKT 70
           L VV +++ +L     +  +    Q Q  + + N      EGSL+P+EC   C  RCS T
Sbjct: 4   LIVVFVISSLLFATQFSNGDELESQAQAPAIHKNG----GEGSLKPEECPKACEYRCSAT 63

Query: 71  AFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           + +KPC+FFC KCC KCLCVP GTYG+K+ CPCYN W TK GGPKCP
Sbjct: 64  SHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Cucsa.340220 vs. Swiss-Prot
Match: GASAD_ARATH (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-27
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 50  TEGSLQPQ-ECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWK 109
           T+ ++ P  ECG RC  RCS T +KKPC+FFC KCC KCLCVP GTYGNKQ CPCYN WK
Sbjct: 35  TKSAIPPLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWK 94

Query: 110 TKRGGPKCP 118
           TK GGPKCP
Sbjct: 95  TKSGGPKCP 103

[Close]

BLAST of Cucsa.340220 vs. TrEMBL
Match: A0A0A0LI43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G841990 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-59
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 15  MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK 74
           MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK
Sbjct: 1   MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK 60

Query: 75  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 103

[Close]

BLAST of Cucsa.340220 vs. TrEMBL
Match: B9H9G0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04300g PE=4 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 4.7e-46
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLA-ISEAPTPQPQTSSNYSNPMHGVTEGSLQPQEC 60
           M RK  I ++L +V+LL  +L+V N A I+EAPTPQPQ ++N + P +G T+GSL PQEC
Sbjct: 1   MSRKPSINVILSLVLLL--LLIVENYANITEAPTPQPQPNTNSNRPPYGTTQGSLNPQEC 60

Query: 61  GARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           G RCTGRCSKTAFKKPCMFFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 116

[Close]

BLAST of Cucsa.340220 vs. TrEMBL
Match: A5AI86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05860 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-43
Identity = 85/117 (72.65%), Postives = 94/117 (80.34%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG 60
           M RK  I +L   +MLL  +L+ +N  I+EAPTPQPQ S+N   PMHGVT+GSL PQEC 
Sbjct: 1   MARKLSIVMLSLSMMLL--LLVQNNATITEAPTPQPQQSTN-GFPMHGVTQGSLHPQECA 60

Query: 61  ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
            RCT RCSKTA+KKPCMFFCQKCCAKCLCVP GTYGNKQ CPCYN WKTKRGGPKCP
Sbjct: 61  PRCTTRCSKTAYKKPCMFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 114

[Close]

BLAST of Cucsa.340220 vs. TrEMBL
Match: M5XG21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023616mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-40
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 9   ILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCS 68
           ++L +VML   ++  H   I+EAP PQPQ S+N++  M G+TEGSLQPQECG RC+ RCS
Sbjct: 8   VMLCLVMLHFLIVENHATTIAEAPAPQPQGSNNHT--MSGITEGSLQPQECGPRCSTRCS 67

Query: 69  KTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
            T +KKPC+FFCQKCCAKCLCVP GTYGNKQ CPCYN WKTKRGGPKCP
Sbjct: 68  NTQYKKPCLFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 114

[Close]

BLAST of Cucsa.340220 vs. TrEMBL
Match: A0A067JQK6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22457 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-40
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 9   ILLFVVMLLNCVLLVHNLAISEAPTPQPQT----SSNYSNPMHGVTEGSLQPQECGARCT 68
           I + V++L+   ++ +N  I+E P+PQPQ     + N+ NP HG TEGSL PQEC  RC+
Sbjct: 6   IAMSVLVLMFLTVVQNNANITEVPSPQPQPQPQPNHNHDNPTHGTTEGSLHPQECAPRCS 65

Query: 69  GRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
            RCSKT +KKPC+FFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 66  TRCSKTQYKKPCLFFCQKCCAKCLCVPEGTYGNKQSCPCYNNWKTKRGGPKCP 118

[Close]

BLAST of Cucsa.340220 vs. TAIR10
Match: AT1G74670.1 (AT1G74670.1 Gibberellin-regulated family protein)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 52  GSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +CG +CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ CPCYN WKT++
Sbjct: 36  GSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQ 95

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 96  GGPKCP 101

[Close]

BLAST of Cucsa.340220 vs. TAIR10
Match: AT3G02885.1 (AT3G02885.1 GAST1 protein homolog 5)

HSP 1 Score: 124.0 bits (310), Expect = 6.1e-29
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 52  GSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           G L+PQ+C ++C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQTCPCYN WKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 112 GGPKCP 118
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Cucsa.340220 vs. TAIR10
Match: AT2G30810.1 (AT2G30810.1 Gibberellin-regulated family protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-28
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 1


Query: 11  LFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKT 70
           L VV +++ +L     +  +    Q Q  + + N      EGSL+P+EC   C  RCS T
Sbjct: 4   LIVVFVISSLLFATQFSNGDELESQAQAPAIHKNG----GEGSLKPEECPKACEYRCSAT 63

Query: 71  AFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           + +KPC+FFC KCC KCLCVP GTYG+K+ CPCYN W TK GGPKCP
Sbjct: 64  SHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Cucsa.340220 vs. TAIR10
Match: AT3G10185.1 (AT3G10185.1 Gibberellin-regulated family protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 50  TEGSLQPQ-ECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWK 109
           T+ ++ P  ECG RC  RCS T +KKPC+FFC KCC KCLCVP GTYGNKQ CPCYN WK
Sbjct: 35  TKSAIPPLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWK 94

Query: 110 TKRGGPKCP 118
           TK GGPKCP
Sbjct: 95  TKSGGPKCP 103

[Close]

BLAST of Cucsa.340220 vs. TAIR10
Match: AT5G15230.1 (AT5G15230.1 GAST1 protein homolog 4)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-23
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 52  GSLQPQECGARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +C + C  RC KT + K C+ FC KCC KCLCVP G YGNKQ C CYN WKT+ 
Sbjct: 41  GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQE 100

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 101 GGPKCP 106

[Close]

BLAST of Cucsa.340220 vs. NCBI nr
Match: gi|778685971|ref|XP_011652310.1| (PREDICTED: protein GAST1 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 7.6e-66
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG 60
           M RKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG
Sbjct: 1   MGRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG 60

Query: 61  ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 117

[Close]

BLAST of Cucsa.340220 vs. NCBI nr
Match: gi|659129996|ref|XP_008464949.1| (PREDICTED: protein GAST1-like [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-63
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG 60
           M RKQ+IEILLFVVMLLNCVLL HN AISEAPTPQPQTS+NYSNPMHGVTEGSLQPQECG
Sbjct: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60

Query: 61  ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
            RCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 117

[Close]

BLAST of Cucsa.340220 vs. NCBI nr
Match: gi|700204593|gb|KGN59726.1| (hypothetical protein Csa_3G841990 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 15  MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK 74
           MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK
Sbjct: 1   MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK 60

Query: 75  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 103

[Close]

BLAST of Cucsa.340220 vs. NCBI nr
Match: gi|743844820|ref|XP_011027306.1| (PREDICTED: protein GAST1-like [Populus euphratica])

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-46
Identity = 86/118 (72.88%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLA-ISEAPTPQPQTSSNYSNPMHGVTEGSLQPQEC 60
           M RK  I ++L +V+LL  +L+V N A I+EAPTPQPQ ++N + P++G T+GSL PQEC
Sbjct: 1   MSRKPSINVILSLVLLL--LLIVENYANITEAPTPQPQPNTNSNRPLYGTTQGSLNPQEC 60

Query: 61  GARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           G RCTGRCSKTAFKKPCMFFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 116

[Close]

BLAST of Cucsa.340220 vs. NCBI nr
Match: gi|566174416|ref|XP_002308912.2| (hypothetical protein POPTR_0006s04300g [Populus trichocarpa])

HSP 1 Score: 191.8 bits (486), Expect = 6.7e-46
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 1


Query: 1   MRRKQVIEILLFVVMLLNCVLLVHNLA-ISEAPTPQPQTSSNYSNPMHGVTEGSLQPQEC 60
           M RK  I ++L +V+LL  +L+V N A I+EAPTPQPQ ++N + P +G T+GSL PQEC
Sbjct: 1   MSRKPSINVILSLVLLL--LLIVENYANITEAPTPQPQPNTNSNRPPYGTTQGSLNPQEC 60

Query: 61  GARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           G RCTGRCSKTAFKKPCMFFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 116

The following BLAST results are available for this feature:

BLAST of Cucsa.340220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GAST1_SOLLC	6.3e-36	59.46	Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1	[more]
GASA6_ARATH	4.4e-29	75.76	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1	[more]
GASA5_ARATH	1.1e-27	72.73	Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1	[more]
GASAC_ARATH	4.1e-27	49.53	Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1	[more]
GASAD_ARATH	5.4e-27	71.01	Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1	[more]

BLAST of Cucsa.340220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI43_CUCSA	2.2e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G841990 PE=4 SV=1	[more]
B9H9G0_POPTR	4.7e-46	72.88	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04300g PE=4 SV=2	[more]
A5AI86_VITVI	2.2e-43	72.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05860 PE=4 SV=...	[more]
M5XG21_PRUPE	3.8e-40	68.81	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023616mg PE=4 SV=1	[more]
A0A067JQK6_JATCU	5.0e-40	64.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22457 PE=4 SV=1	[more]

BLAST of Cucsa.340220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74670.1	2.5e-30	75.76	Gibberellin-regulated family protein	[more]
AT3G02885.1	6.1e-29	72.73	GAST1 protein homolog 5	[more]
AT2G30810.1	2.3e-28	49.53	Gibberellin-regulated family protein	[more]
AT3G10185.1	3.0e-28	71.01	Gibberellin-regulated family protein	[more]
AT5G15230.1	2.2e-23	62.12	GAST1 protein homolog 4	[more]

BLAST of Cucsa.340220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685971\|ref\|XP_011652310.1\|	7.6e-66	99.15	PREDICTED: protein GAST1 [Cucumis sativus]	[more]
gi\|659129996\|ref\|XP_008464949.1\|	1.2e-63	94.87	PREDICTED: protein GAST1-like [Cucumis melo]	[more]
gi\|700204593\|gb\|KGN59726.1\|	3.1e-59	100.00	hypothetical protein Csa_3G841990 [Cucumis sativus]	[more]
gi\|743844820\|ref\|XP_011027306.1\|	2.3e-46	72.88	PREDICTED: protein GAST1-like [Populus euphratica]	[more]
gi\|566174416\|ref\|XP_002308912.2\|	6.7e-46	72.88	hypothetical protein POPTR_0006s04300g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.340220.1	Cucsa.340220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 58..117 score: 2.4
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..117 score: 6.5
None	No IPR available	PANTHER	PTHR23201:SF8	SUBFAMILY NOT NAMED	coord: 1..117 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.340220	Cla017145	Watermelon (97103) v1	cgywmB609
Cucsa.340220	Csa3G841990	Cucumber (Chinese Long) v2	cgycuB478
Cucsa.340220	MELO3C026601	Melon (DHL92) v3.5.1	cgymeB558
Cucsa.340220	ClCG10G013660	Watermelon (Charleston Gray)	cgywcgB579
Cucsa.340220	CSPI03G40460	Wild cucumber (PI 183967)	cgycpiB504
Cucsa.340220	CmoCh14G011310	Cucurbita moschata (Rifu)	cgycmoB0928
Cucsa.340220	Lsi03G013320	Bottle gourd (USVL1VR-Ls)	cgylsiB551
Cucsa.340220	MELO3C026601.2	Melon (DHL92) v3.6.1	cgymedB559
Cucsa.340220	CsaV3_3G042990	Cucumber (Chinese Long) v3	cgycucB523
Cucsa.340220	Bhi11G001327	Wax gourd	cgywgoB676

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.340220	Watermelon (97103) v2	cgywmbB582