Cucsa.334810 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.334810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA binding (RRM/RBD/RNP motifs) family protein
Location	scaffold03312 : 274746 .. 280215 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCTTTCAAATTGCTTCCAACCTCCAACCTCTACAACTTCCTCTCTATCTCTACAAGAAATTCGCCAAATTCTTCAATCATTAGCTATGCAGGTAACAGATCATTCAATTTCCATTACTTTCTTCAACTTTTGCTTCTCTGATTTCCATTATCAACTTCAATTGATTTCTTCTCTTCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGGTAGCTCATTAACTCTGTGTTACTCTGAACTGAATTGCAAACAGAAGTTGATTATGATTCCCTTCTCTATGCGGTTGATTTCGTTATTGTAGGTTTCTTATTAAATGTAGGTTGCAATTAATAAGCATGAGGCTTGTAAACTCGTAATACTAGCTTCCTAGTAATTAAGGAATCCCTTGCTGAGTTTTGAAAAATGGTAGAAATGTAATTGTCGAACTTATGGTTTCAACCACTATAAAAGGAGGAAATGCCTTTAGTTTGAAATTGTCCCAGTTATAAAGATACACTTTAAGTTTGAGTATGCTAACTCTTGTTAAATTCTCTTCTGTTTTATCTTCTCTAGTTTGAGAGTGAACTTAAAGGGTGTGAGTACTGAGTAGTATGAAAATTTTGAAAGAGTGCTCTTGGAATTGGGATCGGATAGAGGATTATTCAACATGATTGTAACAAGTTTTTGTATGGTGAATTTCTTTTTGGAATCATGGTTTTTCTCTGGTTTGGAGGATGTTTTTTtACGCTAATTCTTGTGTTCCCAGTTTTATTGCTTTCTTTTAGTTTCTCTATTATTATTTTTTtCTTGCTTATTCATGCGGTAGTCTTGGGAAGCTTTTCCCAACAATATAATTTTTGAGCCAACCTCACTCTTGAGAAGATAAGAAGGGTCTGATGGATTGTAACTTGTATTTATCTTTACTTTACCACTGTGATGCAGTGTTGAGTAAGCAATTGCTTGAGTGTTATTCTAATTTATTCTTGTTGGTGCAGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGTATTTTATTATCTCAATTCTCTTTCATATCCACGAAGTCATTATCATGTTGAGCTTGTGGTTTTGCAATGAATGTCAGAAGTTTGGTTCATGTTGGTCTACATTTGGCTGTAAATACCTTCTTATTTAATATGTGTTGTTTTTAAGTGTCCAGTTAGTTCTATATCATCTTTAGTTTTCCCCCCTTCATTTTTCTTCCATTAATTTTGATTGAATTGAAAAGTGGTGGATGAGTGTCATCTTGATTTTTtCCCCTTTCCTTTTCCTAATGAAATACATTTTTTCAGAAAAAaGATTTTCTACTCGTAACCTCAAACATAACAGGAGGAACTTTTTTATAGCTGTAAATGTAATATACGCTGTTTTAGTAGAAGTTCCTCTGTTTTTGTATTTTGTCTGTCTGATCACCACCTTAGTCTTTCTAATAATAATAATAAGAAGAAAAATTATTTTAAATGACAAAGCTTCTAAAAATATTTACAAATATAGCAAAATATTAGATCTATATGTGATAGATCACAATAGACTAAGATAGATTACTATCTATGTCTATGATGATACAGTAGACATGGACACAGATAGAAGTTTATCTTGCATGTTTCTAGAAAAATAGGGAACCGATACTTTTTCTTTGCATGATCATTGCTTTACTCAATAATGGAATTATTTAATATTTTCCTTTTCATCGTGCAATAGTGGAAATAGACCTCTTTTTCTTCTTATCTTGTCAATGCCATAAGCTACTGTAAACAATTTCAATCATTTATTTATATGCCATTCAGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGTACTATTCTTATATTTGAATATGTTTCAAGGCTCGCCTAGTTGTTTATTCTATATTCAATATTTTAAATTTACTATGTTTGCTGGAAGTACGGGTTGTGGACAATGCTGCTGCATGTCTTACACCTACAGAAAATAATTTTCCTAGCACTGAGGTAAATGTGTTGACCCCACTCTATGAATATCAAGTAGCATTTGAGTAGCATTTCGTTCCCATTGATAATATACTTGTTGGAATGCTTTGAATTTGTTATTTGGCGCGTCAAATGACCAATTACAGAGGCACCTCTTTAACTGTAATTTGAATTATTCTATCAAATAATAAATTCCCTCCCTCTCTTCTTGGACATAGCCTATCACATTGTTCGCGAACCATGTAAATCTATAAGTCGTTTCTCTATTGTTTACGTTTTGTCAATTGCATAACAATACTATCAAAGAAAAACCAAGAGGCTGAAGAGTTTCATCAAATGAAAAAGTTTAGGACTTGTTTCTTGTTTACTGTCTTTCGATTTTCTTAAATTGATGTAGATGGATGAAAACTGAAAaGTAAAACCTCCCTTTAGTGCCTGTCTGTCCTGAACCTCATTACACTTCTATAACTAGGGTGAAGAGCTGGTGAAACAGTTTCACACTTTTAGTTTTCATGCGGATGGTGAAAGAGTTCCTTGGTTTATTTAACTATACAAGTGGATGGTGAGGCACCTTATCTTTTTTCCACCTTAAATCTTTTGATGTTTCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGAGTCATCATTCCTGAGGAAACTTTTGTTCGCATTTTCATTCACACTACTCATTTCTGTTAGCTTATCCCCTAATTAAGCATCCTTTACTTCCCTTCCACTTGCTATCTTCAAATTTTAGAACTCGAATATTCTCCACGCCTTGCAGGAAAGCAGAAAATTGATGGTATTTGAGATGTTGAGCTGGTTATTATAGTTAGTGGGTTATAATAGTCTATATTTGGGGTACGTGGGGTACATACTGTTCTAGTCTAGATTGTAATAGTCTATGTTCAGGGGATAGACGGTTTTATTCTGTGTAGAAAATAGTAAACACACTGTGATAGTAAACACACTATGACAAAGAAGGAAATAGAGGATGAGTAGCACAAAGTAGGATTTGAAATAGGTAACATATAATTAGTTGTAGATTATAATAATTGGAAACCCCAATTATAGTTCACCCACTTGAAGTTGGGGCCAAACACTCCCTTTAGTTTTCTATAATAGCTCCTAAGCAACTCCTAAGTGTAACTTATTGACCTTTAGATCGGTATAGTCGTATATTTCTATTATCCAAATAATTTACAATGGTTCTACTATCCTTTATGACAATAGACGGAAGTGAATTTGATTGTTTCACTCTATCTTGGCGTTGAACAGGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGGTGCGTTTATGAATGGCGACGTAAAAGTTAGGATTTTCTTGAACTGGGTTGGTGTAACTAAGAACAATCATAGAAACAATAGGTTTTATAAATTAGGTATTGTTTGATATCTATTTCGTTTTCGGTCTTTTTTTCAAATAAGTCTATTTTTTTtACCGTGATTTGCATCTTCTCACATTTTTAGTCAATTGTCTTTTAAAAACTAATTTTTTAGTTTTTAAAACTCTAGTAAAGAGTAGATAGCAAAGCAAGAAATTTGGAAGTGGTAGGAGTTGTTGTACTTAATTTTTAAGAACTAAAAACTAAAACCAAATGGTTACTAAAAAAATGGAGCCTTAATTATTCGTATATTTTTCTAATTTTCTGTTTTATGAATTAGCCAAAACAATGTTAAAAAAGGAAGTCTGCCAAAAGAATTTAGGTTGTTTGGAGTCCTAAAGAAAAGCACAAGTAATTAATAACAATAACAAGTAGTATTAATTAAAAGAGACCGTTAGTAAATAAAGAGCTAGATTCAAAGTATTAATATATATAACAACATTTAAAAAAGATGCAAATGTAGCAAAATCTATCAAAGTCTATCATTGATAAGCTATGCTATATTTGTTATTTTTTAATTTGTTGCTATAACTCTTCGTTATTATCCCTTAAAATTGCTACCATTATAATTACTCTATTTAAAATCAACATCTTAACGAAAGGTTTAGCCAAATCTATGGCAAAAGATGAACGGTTCCTAGTCGAGAGAAATCTCTTTACAACCTTGTTTCTTTAAAAGCTTCTTTCAAACAATCAAGATTTACCTTTACCTGTTTGAATTCATTTTTTTCTCTCCTGAAAATACAACAAATCTGGGCTTAAACAAGCATCTGTAAGTCAATAAAAAAGTGTTTGTAAGCTCTTTTGGGAATTTGTTCAAACAGATCTTCAAAGACTTGCAAGATTAAAAGAAATAGCTGATAAAAAGAAAAAAaGTAAAACTAAAATTTTGTTAGGTAACTATTTTGTTTTTAGTTTCTGAAATTTATGTTTGTTTTCTCATACTTTTTCTATTATTATTATTATTATTATTTTTACCTATCTAAATAAACACTTGAATATGTAGTGAAATTCCTAAACTGAAAAAACTAATTTTTCAATTTTCAAAATTAGGTTAGCTTTCCCAAACATGTGCAGTAAGTGCTCACAAAGGTTAGAAACTTATGAGTGGTAATAGCATTTATTAACTTCATTAATGATTATCAAACAAGCATTAAAGATTAGGAGTTCTTTTTAGTTGGAAGTGTAGAAGAAGATCCATTATTGTTGGATTTATGAAACTGACCTTTATTTGTTATTTGAAACATGTAGGAATCCCCTGTTGTTGCCTCATCTTGAAAGCTTAGGCTTCAAGAAACTCAATTGGCTTTGGCTGCTTCTATTTGTACTCTGTTTCTTTTCATTCTATTTCTTCAGATTATTTTCTCTTCAGGACTTTGCTCTATTATTATTATTACTATTTGTATTTTTTTTtATTCATATTCTTTAACTAAACTATAAGGGTGTTTGGCTGATGAGAATTTTGTATTTGTAAGATTGGTCATGGAAGTGTAAAGAAAATCCAATTATTATTTATCTTATACTCTTATTAT

mRNA sequence

TCTTTCTTTCAAATTGCTTCCAACCTCCAACCTCTACAACTTCCTCTCTATCTCTACAAGAAATTCGCCAAATTCTTCAATCATTAGCTATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGgttagctttcccaaacatgtgcagtaagtgctcacaaagGAATCCCCTGTTGTTGCCTCATCTTGAAAGCTTAGGCTTCAAGAAACTCAATTGGCTTTGGCTGCTTCTATTTGTACTCTGTTTCTTTTCATTCTATTTCTTCAGATTATTTTCTCTTCAGGACTTTGCTCtattattattattactatttgtatttttttttattCATATTCTTTAACTAAACTATAAGGGTGTTTGGCTGATGAGAATTTTGTATTTGTAAGATTGGTCATGGAAGTGTAAAGAAAATCCAATTATTATTTATCTTATACTCTTATTAT

Coding sequence (CDS)

ATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGGTTAGCTTTCCCAAACATGTGCAGTAA

Protein sequence

MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNLTSKVSFPKHVQ*

Homology

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BLAST of Cucsa.334810 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.7e-52
Identity = 109/236 (46.19%), Postives = 163/236 (69.07%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           M SQ R+V+V ++S+ ATE +I EFFSFSG++E I+IQ  +    +A+VTF++ +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNE---HSAYVTFKETQGAETA 60

Query: 61  LLLSGATIVDQIVSISPVENH----VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGS 120
           +LLSGA+I DQ V I    N+     P  E Q SG++S      V +A++VV+++LAKG 
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAES-----VVQKAEDVVSSMLAKGF 120

Query: 121 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 180
            +G+DA+ KAKAFDEKH  T+ A+A V S D+++GL++KLT G S+VNEK+K+VDQN  V
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQV 180

Query: 181 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREK 233
           +++T++   AAE+ ++  GSAV  ++YV    +W  GAF ++A+A    G KT+EK
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 228

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BLAST of Cucsa.334810 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.7e-10
Identity = 52/226 (23.01%), Postives = 97/226 (42.92%), Query Frame = 1


Query: 8   VQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGAT 67
           V V ++S   TE++I++FFSF G++  I  + + G+++TA + F  P A + ALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTE-KSGETQTAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQDAMNKAK 127
           +    + I+  +        Q       + +        +++ +L++G  +    + K+ 
Sbjct: 65  LGQNKIQITSEDGGAASTTDQGGAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSI 124

Query: 128 AFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTRAAIFAA 187
             D+ + +++             G+ E    G+  VNE+    ++   V +K     FA 
Sbjct: 125 QLDQSYGVSSKFK----------GILESALSGVRSVNERYHVTEKANEVDNK-----FAI 184

Query: 188 ERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKF 234
             KLN T S V T  +     A           AG +AG K +  +
Sbjct: 185 SDKLNRTSSLVSTYFHKALETA-----------AGTSAGQKVQNAY 203

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BLAST of Cucsa.334810 vs. TrEMBL
Match: A0A0A0KYL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 4.7e-128
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

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BLAST of Cucsa.334810 vs. TrEMBL
Match: A0A0A0LNE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.3e-114
Identity = 225/265 (84.91%), Postives = 234/265 (88.30%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLTSK 244
           AKAGQAAGTKTREKFHLAMSNL SK
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISK 265

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BLAST of Cucsa.334810 vs. TrEMBL
Match: B9SIA2_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1321940 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.6e-104
Identity = 197/245 (80.41%), Postives = 227/245 (92.65%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQ QTRTVQVKH+S+LA+EREI+EFFSFSG+IE I+I  E G+SRTAFVTF+DPKALEIA
Sbjct: 1   MQQQTRTVQVKHLSDLASEREIHEFFSFSGEIEHIDIVRENGESRTAFVTFKDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVD+IVSI+PVEN+VP+RE+Q   S  ++G+MYVNRAQEVV+ +LAKGSA+GQ
Sbjct: 61  LLLSGATIVDKIVSITPVENYVPKRELQAKTSPPNNGRMYVNRAQEVVSTMLAKGSALGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTA+ASAKV S DR+VGLTEKLTVGISVVNEKVKSVDQ LHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTASASAKVFSLDRKVGLTEKLTVGISVVNEKVKSVDQRLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
            AAIFAAERK+NDTGSAVK+S+YVTA AAWLNGAF K+A+AGQAAGTKTREKF++A+SNL
Sbjct: 181 MAAIFAAERKINDTGSAVKSSRYVTAGAAWLNGAFDKVARAGQAAGTKTREKFNMAVSNL 240

Query: 241 TSKVS 246
           T+K S
Sbjct: 241 TAKES 245

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BLAST of Cucsa.334810 vs. TrEMBL
Match: M5VRI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 7.8e-99
Identity = 193/264 (73.11%), Postives = 224/264 (84.85%), Query Frame = 1


Query: 2   QSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIAL 61
           Q QTRTVQVK +S+LA++REI+EFFSFSG+IERI+IQ E G S+TAFVTF+DPKALEIAL
Sbjct: 3   QLQTRTVQVKQLSDLASDREIHEFFSFSGEIERIQIQREPGQSKTAFVTFKDPKALEIAL 62

Query: 62  LLSGATIVDQIVSISPVENHVPRREM----------------------QDSGSQSSSGKM 121
           LLSGATIVDQIV ISPVEN+VP+ ++                      +D  S  ++G++
Sbjct: 63  LLSGATIVDQIVIISPVENYVPKTDVLEVRMVESAVCAAPDGILSPNAEDRNSPPTNGRV 122

Query: 122 YVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVG 181
           YVNRAQ+VV  ++AKGSAIGQDA+NKAKAFDEKH+LTA+AS KV+SFD+RVGLTEKLTVG
Sbjct: 123 YVNRAQDVVTCIVAKGSAIGQDAVNKAKAFDEKHRLTASASEKVISFDKRVGLTEKLTVG 182

Query: 182 ISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIA 241
            SVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTS+YVTA AAWLNGAFGK+A
Sbjct: 183 FSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGAAWLNGAFGKVA 242

Query: 242 KAGQAAGTKTREKFHLAMSNLTSK 244
           KAGQAAGTKTREKFH+A+SNLT+K
Sbjct: 243 KAGQAAGTKTREKFHMAVSNLTAK 266

[Close]

BLAST of Cucsa.334810 vs. TrEMBL
Match: V4TTD4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021716mg PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.3e-98
Identity = 198/260 (76.15%), Postives = 220/260 (84.62%), Query Frame = 1


Query: 4   QTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLL 63
           QTRTVQVK+VS+LA EREI+EFFSFSG IERIEI CE G S+TAFVTF+D KALEIALLL
Sbjct: 3   QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILCEYGQSKTAFVTFKDAKALEIALLL 62

Query: 64  SGATIVDQIVSISPVENHVPRREMQD------------SG------SQSSSGKMYVNRAQ 123
           SGATIVDQIVSI+P EN+VP+ E Q+            SG      S SSSG+MYVNRAQ
Sbjct: 63  SGATIVDQIVSITPAENYVPKPESQEVTVVVNAVSEAPSGNNEGKTSPSSSGRMYVNRAQ 122

Query: 124 EVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNE 183
           EVV +VLA+GSAI Q+A+NKAKAFDEKHQ TANASAKV+SFDRRVG TEKLTVGISVVNE
Sbjct: 123 EVVTSVLARGSAIRQEAVNKAKAFDEKHQFTANASAKVISFDRRVGFTEKLTVGISVVNE 182

Query: 184 KVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAA 243
           KVKSVDQ LHVSDKT AAIFAAERK+NDTGSAVKTS+YVTA  AWLNGAF K+A+AGQ A
Sbjct: 183 KVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRYVTAGTAWLNGAFSKVARAGQVA 242

Query: 244 GTKTREKFHLAMSNLTSKVS 246
           GTKTREKF +A+SNLT+K S
Sbjct: 243 GTKTREKFSVAVSNLTAKES 262

[Close]

BLAST of Cucsa.334810 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 334.3 bits (856), Expect = 6.3e-92
Identity = 181/258 (70.16%), Postives = 212/258 (82.17%), Query Frame = 1


Query: 5   TRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLS 64
           TR+VQV +VS+LATEREI+EFFSFSG IE IEIQ E G SR AFVTF DPKALEIALLLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 65  GATIVDQIVSISPVENHVPRRE--------------MQDSGSQSSSG-----KMYVNRAQ 124
           GATIVDQIV+I+  EN+V RRE              +Q+S +Q+ +      + YV++AQ
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQ 123

Query: 125 EVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNE 184
           +VVA VLAKGSA+GQDA+NKAKAFDEKHQL ANASAKV SFD+RVGLTEKL+VGIS VNE
Sbjct: 124 DVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNE 183

Query: 185 KVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAA 244
           KVKSVDQ L VSDKT AAIFAAERKLNDTGSAVK+S+YVTA AAW +GAF K+A+ GQ A
Sbjct: 184 KVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVA 243

[Close]

BLAST of Cucsa.334810 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-54
Identity = 114/244 (46.72%), Postives = 163/244 (66.80%), Query Frame = 1


Query: 7   TVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  AT+R++ EFFSFSG I  +E Q E   ++ A+VTF+D +  E A+LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQ--IVSISPVENHVPRR----EMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 126
           TIVD   IVS++P     P      E +DS     +G   + +A++VV+++LAKG  +G+
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGFILGK 124

Query: 127 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 186
           DA+ KAK+ DEKHQLT+ ASAKV SFD+++G T+K+  G  VV EKV+ VDQ   VS+KT
Sbjct: 125 DAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQVSEKT 184

Query: 187 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 245
           ++AI AAE+ +++ GSA+  ++YV   A W+ GAF K+AKA +  G K +EK  +A    
Sbjct: 185 KSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMAEEED 244

[Close]

BLAST of Cucsa.334810 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-53
Identity = 109/236 (46.19%), Postives = 163/236 (69.07%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           M SQ R+V+V ++S+ ATE +I EFFSFSG++E I+IQ    +  +A+VTF++ +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ--SSNEHSAYVTFKETQGAETA 60

Query: 61  LLLSGATIVDQIVSISPVENH----VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGS 120
           +LLSGA+I DQ V I    N+     P  E Q SG++S      V +A++VV+++LAKG 
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAES-----VVQKAEDVVSSMLAKGF 120

Query: 121 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 180
            +G+DA+ KAKAFDEKH  T+ A+A V S D+++GL++KLT G S+VNEK+K+VDQN  V
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQV 180

Query: 181 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREK 233
           +++T++   AAE+ ++  GSAV  ++YV    +W  GAF ++A+A    G KT+EK
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 229

[Close]

BLAST of Cucsa.334810 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 204.9 bits (520), Expect = 5.8e-53
Identity = 107/240 (44.58%), Postives = 163/240 (67.92%), Query Frame = 1


Query: 7   TVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  ATER++ EFFSFSG I  +E Q E   S+ A+VTF+D +  E A+LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQIVSIS-------PVENHVPRREMQDSGSQSSSGKMYVN---RAQEVVANVLAKGS 126
           TIVD  V+++       P +       +++S   SS  +  V+   +A++VV+ +++KG 
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124

Query: 127 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 186
            +G+DA+ KAK+ DEKHQLT+ ASA+V SFD+R+G TEK+  G +VV+EKVK VDQ   V
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184

Query: 187 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLA 237
           ++KT++AI AAE+ +++ GSA+  ++YV   A W+ GAF +++KA +  G K +EK  LA
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLA 244

[Close]

BLAST of Cucsa.334810 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-45
Identity = 88/220 (40.00%), Postives = 148/220 (67.27%), Query Frame = 1


Query: 3   SQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALL 62
           S  +TV++ +VS + +++++ EFFSFSG I+ +E++ E  +S+ A+VTF+D +  E A+L
Sbjct: 26  SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query: 63  LSGATIVDQIVSISPVENH-VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQD 122
           L+GA I D  VSI+P  N+ +P   +     + S     V +A++VV  ++ +G A+G+D
Sbjct: 86  LTGAVIADLRVSITPAVNYQLPPEALALDSQEHSFNGFSVKKAEDVVNIMVGRGYALGKD 145

Query: 123 AMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTR 182
           AM KAKAFD++H L +NASA + S D ++GL+EKL++G +VVNEK++ +D+   V + T+
Sbjct: 146 AMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREITK 205

Query: 183 AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 222
           +A+ AAE       +A+  + YV++ A+W + AFG + KA
Sbjct: 206 SALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA 245

[Close]

BLAST of Cucsa.334810 vs. NCBI nr
Match: gi|778692464|ref|XP_011653468.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 481.1 bits (1237), Expect = 1.2e-132
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVSFPKHVQ 252
           TSKVSFPKHVQ
Sbjct: 241 TSKVSFPKHVQ 251

[Close]

BLAST of Cucsa.334810 vs. NCBI nr
Match: gi|449462774|ref|XP_004149115.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 6.7e-128
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

[Close]

BLAST of Cucsa.334810 vs. NCBI nr
Match: gi|659082719|ref|XP_008441996.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo])

HSP 1 Score: 449.5 bits (1155), Expect = 3.8e-123
Identity = 234/245 (95.51%), Postives = 240/245 (97.96%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQ VSISPVENHVPRREMQDSGSQ SSGKMYVNRAQEVVANVLAKGS IGQ
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQDSGSQPSSGKMYVNRAQEVVANVLAKGSVIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

[Close]

BLAST of Cucsa.334810 vs. NCBI nr
Match: gi|659082717|ref|XP_008441995.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 1.2e-119
Identity = 234/264 (88.64%), Postives = 240/264 (90.91%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ-------------------DSGSQSSSGKMYV 120
           LLLSGATIVDQ VSISPVENHVPRREMQ                   DSGSQ SSGKMYV
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQVVDNAACLTPTENNFPNTEDSGSQPSSGKMYV 120

Query: 121 NRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGIS 180
           NRAQEVVANVLAKGS IGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 121 NRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 180

Query: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 240
           VVNEKVKSVDQNLHVSDKTRAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKA
Sbjct: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKA 240

Query: 241 GQAAGTKTREKFHLAMSNLTSKVS 246
           GQAAGTKTREKFHLAMSNLTSK S
Sbjct: 241 GQAAGTKTREKFHLAMSNLTSKES 264

[Close]

BLAST of Cucsa.334810 vs. NCBI nr
Match: gi|449468279|ref|XP_004151849.1| (PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus])

HSP 1 Score: 419.9 bits (1078), Expect = 3.2e-114
Identity = 225/265 (84.91%), Postives = 234/265 (88.30%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLTSK 244
           AKAGQAAGTKTREKFHLAMSNL SK
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISK 265

The following BLAST results are available for this feature:

BLAST of Cucsa.334810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	2.7e-52	46.19	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	5.7e-10	23.01	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of Cucsa.334810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYL6_CUCSA	4.7e-128	99.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1	[more]
A0A0A0LNE8_CUCSA	2.3e-114	84.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1	[more]
B9SIA2_RICCO	3.6e-104	80.41	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1321940 PE=4 ...	[more]
M5VRI4_PRUPE	7.8e-99	73.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1	[more]
V4TTD4_9ROSI	1.3e-98	76.15	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021716mg PE=4 SV=1	[more]

BLAST of Cucsa.334810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G32450.1	6.3e-92	70.16	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	1.8e-54	46.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.2e-53	46.19	binding partner of acd11 1	[more]
AT5G46870.1	5.8e-53	44.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	2.6e-45	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.334810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692464\|ref\|XP_011653468.1\|	1.2e-132	100.00	PREDICTED: protein vip1-like isoform X2 [Cucumis sativus]	[more]
gi\|449462774\|ref\|XP_004149115.1\|	6.7e-128	99.59	PREDICTED: protein vip1-like isoform X1 [Cucumis sativus]	[more]
gi\|659082719\|ref\|XP_008441996.1\|	3.8e-123	95.51	PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo]	[more]
gi\|659082717\|ref\|XP_008441995.1\|	1.2e-119	88.64	PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo]	[more]
gi\|449468279\|ref\|XP_004151849.1\|	3.2e-114	84.91	PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.334810.1	Cucsa.334810.1	mRNA
Cucsa.334810.2	Cucsa.334810.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..68 score: 6.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 6..80 score: 9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..75 score: 4.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..98 score: 2.44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.334810	Cla012120	Watermelon (97103) v1	cgywmB604
Cucsa.334810	Csa4G188980	Cucumber (Chinese Long) v2	cgycuB473
Cucsa.334810	MELO3C008814	Melon (DHL92) v3.5.1	cgymeB547
Cucsa.334810	ClCG04G005420	Watermelon (Charleston Gray)	cgywcgB575
Cucsa.334810	CSPI04G11130	Wild cucumber (PI 183967)	cgycpiB499
Cucsa.334810	CmaCh03G002310	Cucurbita maxima (Rimu)	cgycmaB0918
Cucsa.334810	CmoCh03G002430	Cucurbita moschata (Rifu)	cgycmoB0917
Cucsa.334810	Lsi01G016760	Bottle gourd (USVL1VR-Ls)	cgylsiB544
Cucsa.334810	Cp4.1LG10g06980	Cucurbita pepo (Zucchini)	cgycpeB0874
Cucsa.334810	MELO3C008814.2	Melon (DHL92) v3.6.1	cgymedB548
Cucsa.334810	CsaV3_4G012160	Cucumber (Chinese Long) v3	cgycucB516
Cucsa.334810	Cla97C04G072000	Watermelon (97103) v2	cgywmbB579
Cucsa.334810	Bhi03G001849	Wax gourd	cgywgoB671
Cucsa.334810	Carg19575	Silver-seed gourd	carcgyB0703

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.334810	Cucurbita maxima (Rimu)	cgycmaB0919
Cucsa.334810	Cucurbita moschata (Rifu)	cgycmoB0918
Cucsa.334810	Cucurbita pepo (Zucchini)	cgycpeB0875
Cucsa.334810	Silver-seed gourd	carcgyB0658