CsaV3_4G012160 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G012160
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	binding partner of ACD11 1-like
Location	chr4 : 9455930 .. 9461604 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAGTGTATTTTTAAACTCGTATATGAAAAAGTTAGTCATACAACATAATTGCATTTTTGAAACTTCATACAAAGTACTAACGGTTGATCTAAAAGTGTAAATTTCACTTTGCCATATATTAAAATTTAGCATTTCTTTTAAGAAGAAAAGCAAAGTTTAATTTTCTTGCTTTTTATCTCTCTCACGCTCTGTCGAGTGATTCTTTCTTTCAAATTGCTTCCAACCTCCAACCTCTACAACTTCCTCTCTATCTCTACAAGAAATTCGCCAAATTCTTCAATCATTAGCTATGCAGGTAACAGATCATTCAATTTCCATTACTTTCTTCAACTTTTGCTTCTCTGATTTCCATTATCAACTTCAATTGATTTCTTCTCTTCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGGTAGCTCATTAACTCTGTGTTACTCTGAACTGAATTGCAAACAGAAGTTGATTATGATTCCCTTCTCTATGCGGTTGATTTCGTTATTGTAGGTTTCTTATTAAATGTAGGTTGCAATTAATAAGCATGAGGCTTGTAAACTCGTAATACTAGCTTCCTAGTAATTAAGGAATCCCTTGCTGAGTTTTGAAAAATGGTAGAAATGTAATTGTCGAACTTATGGTTTCAACCACTATAAAAGGAGGAAATGCCTTTAGTTTGAAATTGTCCCAGTTATAAAGATACACTTTAAGTTTGAGTATGCTAACTCTTGTTAAATTCTCTTCTGTTTTATCTTCTCTAGTTTGAGAGTGAACTTAAAGGGTGTGAGTACTGAGTAGTATGAAAATTTTGAAAGAGTGCTCTTGGAATTGGGATCGGATAGAGGATTATTCAACATGATTGTAACAAGTTTTTGTATGGTGAATTTCTTTTTGGAATCATGGTTTTTCTCTGGTTTGGAGGATGTTTTTTTACGCTAATTCTTGTGTTCCCAGTTTTATTGCTTTCTTTTAGTTTCTCTATTATTATTTTTTTCTTGCTTATTCATGCGGTAGTCTTGGGAAGCTTTTCCCAACAATATAATTTTTGAGCCAACCTCACTCTTGAGAAGATAAGAAGGGTCTGATGGATTGTAACTTGTATTTATCTTTACTTTACCACTGTGATGCAGTGTTGAGTAAGCAATTGCTTGAGTGTTATTCTAATTTATTCTTGTTGGTGCAGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGTATTTTATTATCTCAATTCTCTTTCATATCCACGAAGTCATTATCATGTTGAGCTTGTGGTTTTGCAATGAATGTCAGAAGTTTGGTTCATGTTGGTCTACATTTGGCTGTAAATACCTTCTTATTTAATATGTGTTGTTTTTAAGTGTCCAGTTAGTTCTATATCATCTTTAGTTTTCCCCCCTTCATTTTTCTTCCATTAATTTTGATTGAATTGAAAAGTGGTGGATGAGTGTCATCTTGATTTTTTCCCCTTTCCTTTTCCTAATGAAATACATTTTTTCAGAAAAAAGATTTTCTACTCGTAACCTCAAACATAACAGGAGGAACTTTTTTATAGCTGTAAATGTAATATACGCTGTTTTAGTAGAAGTTCCTCTGTTTTTGTATTTTGTCTGTCTGATCACCACCTTAGTCTTTCTAATAATAATAATAAGAAGAAAAATTATTTTAAATGACAAAGCTTCTAAAAATATTTACAAATATAGCAAAATATTAGATCTATATGTGATAGATCACAATAGACTAAGATAGATTACTATCTATGTCTATGATGATACAGTAGACATGGACACAGATAGAAGTTTATCTTGCATGTTTCTAGAAAAATAGGGAACCGATACTTTTTCTTTGCATGATCATTGCTTTACTCAATAATGGAATTATTTAATATTTTCCTTTTCATCGTGCAATAGTGGAAATAGACCTCTTTTTCTTCTTATCTTGTCAATGCCATAAGCTACTGTAAACAATTTCAATCATTTATTTATATGCCATTCAGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGTACTATTCTTATATTTGAATATGTTTCAAGGCTCGCCTAGTTGTTTATTCTATATTCAATATTTTAAATTTACTATGTTTGCTGGAAGTACGGGTTGTGGACAATGCTGCTGCATGTCTTACACCTACAGAAAATAATTTTCCTAGCACTGAGGTAAATGTGTTGACCCCACTCTATGAATATCAAGTAGCATTTGAGTAGCATTTCGTTCCCATTGATAATATACTTGTTGGAATGCTTTGAATTTGTTATTTGGCGCGTCAAATGACCAATTACAGAGGCACCTCTTTAACTGTAATTTGAATTATTCTATCAAATAATAAATTCCCTCCCTCTCTTCTTGGACATAGCCTATCACATTGTTCGCGAACCATGTAAATCTATAAGTCGTTTCTCTATTGTTTACGTTTTGTCAATTGCATAACAATACTATCAAAGAAAAACCAAGAGGCTGAAGAGTTTCATCAAATGAAAAAGTTTAGGACTTGTTTCTTGTTTACTGTCTTTCGATTTTCTTAAATTGATGTAGATGGATGAAAACTGAAAAGTAAAACCTCCCTTTAGTGCCTGTCTGTCCTGAACCTCATTACACTTCTATAACTAGGGTGAAGAGCTGGTGAAACAGTTTCACACTTTTAGTTTTCATGCGGATGGTGAAAGAGTTCCTTGGTTTATTTAACTATACAAGTGGATGGTGAGGCACCTTATCTTTTTTCCACCTTAAATCTTTTGATGTTTCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGAGTCATCATTCCTGAGGAAACTTTTGTTCGCATTTTCATTCACACTACTCATTTCTGTTAGCTTATCCCCTAATTAAGCATCCTTTACTTCCCTTCCACTTGCTATCTTCAAATTTTAGAACTCGAATATTCTCCACGCCTTGCAGGAAAGCAGAAAATTGATGGTATTTGAGATGTTGAGCTGGTTATTATAGTTAGTGGGTTATAATAGTCTATATTTGGGGTACGTGGGGTACATACTGTTCTAGTCTAGATTGTAATAGTCTATGTTCAGGGGATAGACGGTTTTATTCTGTGTAGAAAATAGTAAACACACTGTGATAGTAAACACACTATGACAAAGAAGGAAATAGAGGATGAGTAGCACAAAGTAGGATTTGAAATAGGTAACATATAATTAGTTGTAGATTATAATAATTGGAAACCCCAATTATAGTTCACCCACTTGAAGTTGGGGCCAAACACTCCCTTTAGTTTTCTATAATAGCTCCTAAGCAACTCCTAAGTGTAACTTATTGACCTTTAGATCGGTATAGTCGTATATTTCTATTATCCAAATAATTTACAATGGTTCTACTATCCTTTATGACAATAGACGGAAGTGAATTTGATTGTTTCACTCTATCTTGGCGTTGAACAGGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGGTGCGTTTATGAATGGCGACGTAAAAGTTAGGATTTTCTTGAACTGGGTTGGTGTAACTAAGAACAATCATAGAAACAATAGGTTTTATAAATTAGGTATTGTTTGATATCTATTTCGTTTTCGGTCTTTTTTTCAAATAAGTCTATTTTTTTTACCGTGATTTGCATCTTCTCACATTTTTAGTCAATTGTCTTTTAAAAACTAATTTTTTAGTTTTTAAAACTCTAGTAAAGAGTAGATAGCAAAGCAAGAAATTTGGAAGTGGTAGGAGTTGTTGTACTTAATTTTTAAGAACTAAAAACTAAAACCAAATGGTTACTAAAAAAATGGAGCCTTAATTATTCGTATATTTTTCTAATTTTCTGTTTTATGAATTAGCCAAAACAATGTTAAAAAAGGAAGTCTGCCAAAAGAATTTAGGTTGTTTGGAGTCCTAAAGAAAAGCACAAGTAATTAATAACAATAACAAGTAGTATTAATTAAAAGAGACCGTTAGTAAATAAAGAGCTAGATTCAAAGTATTAATATATATAACAACATTTAAAAAAGATGCAAATGTAGCAAAATCTATCAAAGTCTATCATTGATAAGCTATGCTATATTTGTTATTTTTTAATTTGTTGCTATAACTCTTCGTTATTATCCCTTAAAATTGCTACCATTATAATTACTCTATTTAAAATCAACATCTTAACGAAAGGTTTAGCCAAATCTATGGCAAAAGATGAACGGTTCCTAGTCGAGAGAAATCTCTTTACAACCTTGTTTCTTTAAAAGCTTCTTTCAAACAATCAAGATTTACCTTTACCTGTTTGAATTCATTTTTTTCTCTCCTGAAAATACAACAAATCTGGGCTTAAACAAGCATCTGTAAGTCAATAAAAAAGTGTTTGTAAGCTCTTTTGGGAATTTGTTCAAACAGATCTTCAAAGACTTGCAAGATTAAAAGAAATAGCTGATAAAAAGAAAAAAAGTAAAACTAAAATTTTGTTAGGTAACTATTTTGTTTTTAGTTTCTGAAATTTATGTTTGTTTTCTCATACTTTTTCTATTATTATTATTATTATTATTTTTACCTATCTAAATAAACACTTGAATATGTAGTGAAATTCCTAAACTGAAAAAACTAATTTTTCAATTTTCAAAATTAGGTTAGCTTTCCCAAACATGTGCAGTAAGTGCTCACAAAGGTTAGAAACTTATGAGTGGTAATAGCATTTATTAACTTCATTAATGATTATCAAACAAGCATTAAAGATTAGGAGTTCTTTTTAGTTGGAAGTGTAGAAGAAGATCCATTATTGTTGGATTTATGAAACTGACCTTTATTTGTTATTTGAAACATGTAGGAATCCCCTGTTGTTGCCTCATCTTGAAAGCTTAGGCTTCAAGAAACTCAATTGGCTTTGGCTGCTTCTATTTGTACTCTGTTTCTTTTCATTCTATTTCTTCAGATTATTTTCTCTTCAGGACTTTGCTCTATTATTATTATTACTATTTGTATTTTTTTTTATTCATATTCTTTAACTAAACTATAAGGGTGTTTGGCTGATGAGAATTTTGTATTTGTAAGATTGGTCATGGAAGTGTAAAGAAAATCCAATTATTATTTATCTTATACTCTTATTATTT

mRNA sequence

ATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGGTTAGCTTTCCCAAACATGTGCAGTAA

Coding sequence (CDS)

ATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGAATCTAGCTACTGAGAGGGAGATAAACGAGTTCTTCTCCTTCTCTGGACAAATTGAACGCATTGAGATTCAATGTGAACAAGGGGATTCCAGGACTGCGTTCGTCACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGCTATTATCGGGAGCGACAATTGTAGATCAGATTGTGAGCATATCTCCTGTTGAAAATCATGTACCAAGAAGAGAAATGCAGGATTCTGGAAGCCAGTCTAGCAGTGGAAAAATGTATGTTAATAGAGCGCAAGAAGTAGTTGCAAATGTGCTTGCTAAGGGTTCAGCAATCGGACAAGATGCCATGAACAAAGCAAAGGCATTTGACGAAAAGCATCAGCTAACAGCTAATGCATCTGCAAAGGTATTGTCCTTTGACAGAAGAGTTGGGCTGACAGAGAAATTGACGGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTCGATCAAAATCTTCACGTTTCAGATAAAACAAGGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAATGACACAGGATCTGCTGTTAAAACAAGCAAGTATGTGACAGCAAGTGCTGCTTGGCTAAATGGTGCTTTTGGCAAGATCGCAAAAGCAGGGCAGGCAGCGGGAACAAAAACTAGAGAGAAATTCCATTTGGCCATGTCAAACTTAACTTCAAAGGTTAGCTTTCCCAAACATGTGCAGTAA

Protein sequence

MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNLTSKVSFPKHVQ

Homology

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BLAST of CsaV3_4G012160 vs. NCBI nr
Match: XP_011653468.1 (PREDICTED: protein vip1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 472.2 bits (1214), Expect = 1.1e-129
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVSFPKHVQ 252
           TSKVSFPKHVQ
Sbjct: 241 TSKVSFPKHVQ 251

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BLAST of CsaV3_4G012160 vs. NCBI nr
Match: XP_004149115.1 (PREDICTED: protein vip1-like isoform X1 [Cucumis sativus] >KGN53924.1 hypothetical protein Csa_4G188980 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 6.1e-125
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

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BLAST of CsaV3_4G012160 vs. NCBI nr
Match: XP_008441996.1 (PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 440.7 bits (1132), Expect = 3.5e-120
Identity = 234/245 (95.51%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQ VSISPVENHVPRREMQDSGSQ SSGKMYVNRAQEVVANVLAKGS IGQ
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQDSGSQPSSGKMYVNRAQEVVANVLAKGSVIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

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BLAST of CsaV3_4G012160 vs. NCBI nr
Match: XP_008441995.1 (PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 429.1 bits (1102), Expect = 1.0e-116
Identity = 234/264 (88.64%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ-------------------DSGSQSSSGKMYV 120
           LLLSGATIVDQ VSISPVENHVPRREMQ                   DSGSQ SSGKMYV
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQXXXXXXXXXXXXXXXXXXEDSGSQPSSGKMYV 120

Query: 121 NRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGIS 180
           NRAQEVVANVLAKGS IGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 121 NRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 180

Query: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 240
           VVNEKVKSVDQNLHVSDKTRAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKA
Sbjct: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKA 240

Query: 241 GQAAGTKTREKFHLAMSNLTSKVS 246
           GQAAGTKTREKFHLAMSNLTSK S
Sbjct: 241 GQAAGTKTREKFHLAMSNLTSKES 264

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BLAST of CsaV3_4G012160 vs. NCBI nr
Match: XP_004151849.1 (PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus] >KGN63348.1 hypothetical protein Csa_2G431170 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 3.8e-111
Identity = 225/265 (84.91%), Postives = 234/265 (88.30%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAXXXXXXXXXXXSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLTSK 244
           AKAGQAAGTKTREKFHLAMSNL SK
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISK 265

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BLAST of CsaV3_4G012160 vs. TAIR10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-74
Identity = 159/258 (61.63%), Postives = 190/258 (73.64%), Query Frame = 0


Query: 5   TRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLS 64
           TR+VQV +VS+LATEREI+EFFSFSG IE IEIQ E G SR AFVTF DPKALEIALLLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 65  GATIVDQIVSISPVENHVPRRE--------------MQDSGSQS-----SSGKMYVNRAQ 124
           GATIVDQIV+I+  EN+V RRE              +Q+S +Q+      + + YV++AQ
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQ 123

Query: 125 EVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNE 184
           +VVA VLAKGSA+GQDA+NKAKAFDEKHQL ANASAKV SFD+RVGLTEKL+VGIS V  
Sbjct: 124 DVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVXX 183

Query: 185 KVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAA 244
                                  RKLNDTGSAVK+S+YVTA AAW +GAF K+A+ GQ A
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXRKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVA 243

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BLAST of CsaV3_4G012160 vs. TAIR10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 201.8 bits (512), Expect = 4.9e-52
Identity = 114/244 (46.72%), Postives = 163/244 (66.80%), Query Frame = 0


Query: 7   TVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  AT+R++ EFFSFSG I  +E Q E   ++ A+VTF+D +  E A+LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQ--IVSISPVENHVPRR----EMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 126
           TIVD   IVS++P     P      E +DS     +G   + +A++VV+++LAKG  +G+
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGFILGK 124

Query: 127 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 186
           DA+ KAK+ DEKHQLT+ ASAKV SFD+++G T+K+  G  VV EKV+ VDQ   VS+KT
Sbjct: 125 DAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQVSEKT 184

Query: 187 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 245
           ++AI AAE+ +++ GSA+  ++YV   A W+ GAF K+AKA +  G K +EK  +A    
Sbjct: 185 KSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMAEEED 244

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BLAST of CsaV3_4G012160 vs. TAIR10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-50
Identity = 107/240 (44.58%), Postives = 163/240 (67.92%), Query Frame = 0


Query: 7   TVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  ATER++ EFFSFSG I  +E Q E   S+ A+VTF+D +  E A+LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQIVSIS-------PVENHVPRREMQDSGSQSSSGKMYVN---RAQEVVANVLAKGS 126
           TIVD  V+++       P +       +++S   SS  +  V+   +A++VV+ +++KG 
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124

Query: 127 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 186
            +G+DA+ KAK+ DEKHQLT+ ASA+V SFD+R+G TEK+  G +VV+EKVK VDQ   V
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184

Query: 187 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLA 237
           ++KT++AI AAE+ +++ GSA+  ++YV   A W+ GAF +++KA +  G K +EK  LA
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLA 244

[Close]

BLAST of CsaV3_4G012160 vs. TAIR10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-43
Identity = 88/220 (40.00%), Postives = 148/220 (67.27%), Query Frame = 0


Query: 3   SQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALL 62
           S  +TV++ +VS + +++++ EFFSFSG I+ +E++ E  +S+ A+VTF+D +  E A+L
Sbjct: 26  SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query: 63  LSGATIVDQIVSISPVENH-VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQD 122
           L+GA I D  VSI+P  N+ +P   +     + S     V +A++VV  ++ +G A+G+D
Sbjct: 86  LTGAVIADLRVSITPAVNYQLPPEALALDSQEHSFNGFSVKKAEDVVNIMVGRGYALGKD 145

Query: 123 AMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTR 182
           AM KAKAFD++H L +NASA + S D ++GL+EKL++G +VVNEK++ +D+   V + T+
Sbjct: 146 AMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREITK 205

Query: 183 AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 222
           +A+ AAE       +A+  + YV++ A+W + AFG + KA
Sbjct: 206 SALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA 245

[Close]

BLAST of CsaV3_4G012160 vs. TAIR10
Match: AT5G16840.2 (binding partner of acd11 1)

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-38
Identity = 94/236 (39.83%), Postives = 141/236 (59.75%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           M SQ R+V+V ++S+ ATE +I EFFSFSG++E I+IQ    +  +A+VTF++ +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ--SSNEHSAYVTFKETQGAETA 60

Query: 61  LLLSGATIVDQIVSISPVENH----VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGS 120
           +LLSGA+I DQ V I    N+     P  E Q SG++S      V +A++VV+++LAKG 
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAES-----VVQKAEDVVSSMLAKGF 120

Query: 121 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 180
            +G+DA+ KAKAFDEKH  T+ A+A                           +VDQN  V
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQNFQV 180

Query: 181 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREK 233
           +++T++   AAE+ ++  GSAV  ++YV    +W  GAF ++A+A    G KT+EK
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 229

[Close]

BLAST of CsaV3_4G012160 vs. Swiss-Prot
Match: sp|Q9LFD5|BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-37
Identity = 94/236 (39.83%), Postives = 141/236 (59.75%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           M SQ R+V+V ++S+ ATE +I EFFSFSG++E I+I   Q +  +A+VTF++ +  E A
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI---QSNEHSAYVTFKETQGAETA 60

Query: 61  LLLSGATIVDQIVSISPVENH----VPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGS 120
           +LLSGA+I DQ V I    N+     P  E Q SG++S      V +A++VV+++LAKG 
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAES-----VVQKAEDVVSSMLAKGF 120

Query: 121 AIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHV 180
            +G+DA+ KAKAFDEKH  T+ A+A                           +VDQN  V
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQNFQV 180

Query: 181 SDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREK 233
           +++T++   AAE+ ++  GSAV  ++YV    +W  GAF ++A+A    G KT+EK
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 228

[Close]

BLAST of CsaV3_4G012160 vs. Swiss-Prot
Match: sp|P87216|VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 51/226 (22.57%), Postives = 93/226 (41.15%), Query Frame = 0


Query: 8   VQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLLSGAT 67
           V V ++S   TE++I++FFSF G++  I  + + G+++TA + F  P A + ALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTE-KSGETQTAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQDAMNKAK 127
           +    + I+                              +++ +L++G  +    + K+ 
Sbjct: 65  LGQNKIQITSEXXXXXXXXXXXXXXXXXXXXXXDKPRSAIISELLSRGYHLSDVTLEKSI 124

Query: 128 AFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKTRAAIFAA 187
             D+ + +++             G+ E    G+  VNE+    ++   V +K     FA 
Sbjct: 125 QLDQSYGVSSKFK----------GILESALSGVRSVNERYHVTEKANEVDNK-----FAI 184

Query: 188 ERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKF 234
             KLN T S V T  +     A           AG +AG K +  +
Sbjct: 185 SDKLNRTSSLVSTYFHKALETA-----------AGTSAGQKVQNAY 203

[Close]

BLAST of CsaV3_4G012160 vs. TrEMBL
Match: tr|A0A0A0KYL6|A0A0A0KYL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G188980 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 4.0e-125
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

[Close]

BLAST of CsaV3_4G012160 vs. TrEMBL
Match: tr|A0A1S3B5F3|A0A1S3B5F3_CUCME (binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485992 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 2.3e-120
Identity = 234/245 (95.51%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQDSGSQSSSGKMYVNRAQEVVANVLAKGSAIGQ 120
           LLLSGATIVDQ VSISPVENHVPRREMQDSGSQ SSGKMYVNRAQEVVANVLAKGS IGQ
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQDSGSQPSSGKMYVNRAQEVVANVLAKGSVIGQ 120

Query: 121 DAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180
           DAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT
Sbjct: 121 DAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQNLHVSDKT 180

Query: 181 RAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKAGQAAGTKTREKFHLAMSNL 240
           RAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKAGQAAGTKTREKFHLAMSNL
Sbjct: 181 RAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKAGQAAGTKTREKFHLAMSNL 240

Query: 241 TSKVS 246
           TSK S
Sbjct: 241 TSKES 245

[Close]

BLAST of CsaV3_4G012160 vs. TrEMBL
Match: tr|A0A1S3B5B6|A0A1S3B5B6_CUCME (binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485992 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 6.9e-117
Identity = 234/264 (88.64%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSNLATEREINEFFSFSG+IE IEIQCEQG+SRTAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ-------------------DSGSQSSSGKMYV 120
           LLLSGATIVDQ VSISPVENHVPRREMQ                   DSGSQ SSGKMYV
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQXXXXXXXXXXXXXXXXXXEDSGSQPSSGKMYV 120

Query: 121 NRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGIS 180
           NRAQEVVANVLAKGS IGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 121 NRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 180

Query: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 240
           VVNEKVKSVDQNLHVSDKTRAAIFAAERKL+DTGSAVKTSKYVTASAAWLNGAFGK+AKA
Sbjct: 181 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKA 240

Query: 241 GQAAGTKTREKFHLAMSNLTSKVS 246
           GQAAGTKTREKFHLAMSNLTSK S
Sbjct: 241 GQAAGTKTREKFHLAMSNLTSKES 264

[Close]

BLAST of CsaV3_4G012160 vs. TrEMBL
Match: tr|A0A0A0LNE8|A0A0A0LNE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431170 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.5e-111
Identity = 225/265 (84.91%), Postives = 234/265 (88.30%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAXXXXXXXXXXXSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLTSK 244
           AKAGQAAGTKTREKFHLAMSNL SK
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISK 265

[Close]

BLAST of CsaV3_4G012160 vs. TrEMBL
Match: tr|A0A1S3CIA3|A0A1S3CIA3_CUCME (binding partner of ACD11 1-like OS=Cucumis melo OX=3656 GN=LOC103501087 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 2.1e-110
Identity = 223/265 (84.15%), Postives = 234/265 (88.30%), Query Frame = 0


Query: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCEQG+S+TAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPVENHVPRREMQD----------------------SGSQSSSGK 120
           LLLSGATIVD+IVSI+P ENHVPRRE+Q+                      S SQ SSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREIQEVRXXXXXXXXXXXXXXXXXXXXSASQPSSGK 120

Query: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKHQLTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 240
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

Query: 241 AKAGQAAGTKTREKFHLAMSNLTSK 244
           AKAGQAAGTKTREKFHLAMSNL SK
Sbjct: 241 AKAGQAAGTKTREKFHLAMSNLISK 265

The following BLAST results are available for this feature:

BLAST of CsaV3_4G012160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653468.1	1.1e-129	100.00	PREDICTED: protein vip1-like isoform X2 [Cucumis sativus]	[more]
XP_004149115.1	6.1e-125	99.59	PREDICTED: protein vip1-like isoform X1 [Cucumis sativus] >KGN53924.1 hypothetic...	[more]
XP_008441996.1	3.5e-120	95.51	PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo]	[more]
XP_008441995.1	1.0e-116	88.64	PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]	[more]
XP_004151849.1	3.8e-111	84.91	PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus] >KGN63348.1 hy...	[more]

BLAST of CsaV3_4G012160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G32450.1	1.2e-74	61.63	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	4.9e-52	46.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	2.1e-50	44.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	7.1e-43	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	3.1e-38	39.83	binding partner of acd11 1	[more]

BLAST of CsaV3_4G012160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFD5\|BPA1_ARATH	7.3e-37	39.83	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
sp\|P87216\|VIPI_SCHPO	1.1e-05	22.57	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of CsaV3_4G012160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYL6\|A0A0A0KYL6_CUCSA	4.0e-125	99.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G188980 PE=4 SV=1	[more]
tr\|A0A1S3B5F3\|A0A1S3B5F3_CUCME	2.3e-120	95.51	binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034859...	[more]
tr\|A0A1S3B5B6\|A0A1S3B5B6_CUCME	6.9e-117	88.64	binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034859...	[more]
tr\|A0A0A0LNE8\|A0A0A0LNE8_CUCSA	2.5e-111	84.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431170 PE=4 SV=1	[more]
tr\|A0A1S3CIA3\|A0A1S3CIA3_CUCME	2.1e-110	84.15	binding partner of ACD11 1-like OS=Cucumis melo OX=3656 GN=LOC103501087 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G012160.1	CsaV3_4G012160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 e-value: 1.9E-5 score: 34.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..68 e-value: 6.8E-6 score: 25.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..80 score: 9.866
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..107 e-value: 6.1E-9 score: 38.1
None	No IPR available	PANTHER	PTHR44136:SF3	RRM-CONTAINING PROTEIN-RELATED	coord: 3..89
None	No IPR available	PANTHER	PTHR44136	FAMILY NOT NAMED	coord: 3..89
None	No IPR available	PANTHER	PTHR44136:SF3	RRM-CONTAINING PROTEIN-RELATED	coord: 92..243
None	No IPR available	PANTHER	PTHR44136	FAMILY NOT NAMED	coord: 92..243
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 3..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G012160	CSPI04G11130	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G012160	Cucsa.334810	Cucumber (Gy14) v1	cgycucB516
CsaV3_4G012160	CmaCh03G002310	Cucurbita maxima (Rimu)	cmacucB0792
CsaV3_4G012160	CmoCh03G002430	Cucurbita moschata (Rifu)	cmocucB0774
CsaV3_4G012160	Cp4.1LG10g06980	Cucurbita pepo (Zucchini)	cpecucB0085
CsaV3_4G012160	CsGy4G010650	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G012160	Carg19575	Silver-seed gourd	carcucB0662
CsaV3_4G012160	Cla012120	Watermelon (97103) v1	cucwmB356
CsaV3_4G012160	MELO3C008814	Melon (DHL92) v3.5.1	cucmeB328
CsaV3_4G012160	ClCG04G005420	Watermelon (Charleston Gray)	cucwcgB320
CsaV3_4G012160	MELO3C008814.2	Melon (DHL92) v3.6.1	cucmedB321
CsaV3_4G012160	Cla97C04G072000	Watermelon (97103) v2	cucwmbB309
CsaV3_4G012160	Bhi03G001849	Wax gourd	cucwgoB410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G012160	Silver-seed gourd	carcucB0615
CsaV3_4G012160	Cucurbita maxima (Rimu)	cmacucB1017
CsaV3_4G012160	Cucurbita moschata (Rifu)	cmocucB1000
CsaV3_4G012160	Cucurbita pepo (Zucchini)	cpecucB0612
CsaV3_4G012160	Bottle gourd (USVL1VR-Ls)	cuclsiB280