Cucsa.332420 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.332420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Bark storage protein A
Location	scaffold03264 : 145978 .. 147097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATGCAAGAACAACCACGGAGCTGCTTCTAACTCTACTTAGAGTAAAAGGTGTGCTTCACTATGGAACAGCTGGAAATGCAAATCCTCACCTTGAAATTGAGGATGCAACAAGTCCTCGATATTGGGCTCATACATGCCTATGGAATTGGCACTTGCAGGTAAGCAAATCTTCTCAATGGACAAGGGAAAAACTCAAACTAATGTCTTTACGAACCAACTTCCATTCGAATCCTATCAAGATTTCATGAGAAAAGTGGATTTTCTGAAATTTTCCAACTTCAGTATTGTTGATACATAGACAGACATTTGAAGACAACCTTTGAAACAATGTTGGTACCAACCAGAAAAGATCTTCCCTATCGATGGAACTCCTGAAATCAGACAGCAGCATATTTTTTTGGGTTTCTGTGGACAAACTCTAATTTTCAATACTTGTCTGCCTAATCTCATTATCTCCATAAGAATTGAAACAATCATGTCCCGAGTTTTGATGTAGATAAGTTAAGTTTTGGAAGTAATCAGATTAACTAAACTTGATTGACCCTATAAAAAGGGACAAGGAGAGAGCATAACAACCTAACAGTTGAAGATTGTAAAGCTCTCTCTAATTTGCAAGTTTTGAAAATTCCATATTCCATGAGAGTCCAAAACAGAATCACTGTGTGTTTTAATATAAAAGGTAAGAGTACAAGTTTATAAAAGCATTGGAGGCACTTGAAACTTCTTTCTTGAGTATCTGAGGCAGGCCTAAAACAATCCAAATTCAACAACTTCCCCAACTTATTACTAATACATTAATACTGTTATAATAACCTAATAGCATTTCCATCATTCGATCAAGCAAACAGGATCTGCGTAAGAATCTTATGTTTGAAGATACATTTTTCATGATTGTAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATCCGATGTGACCTCCATTGACACCAATAACTGCAGTAGTGGCACTCGTCTGTCTTCAACAAAAGATGCCCTTCATTGCAATTAG

mRNA sequence

ATTAATGCAAGAACAACCACGGAGCTGCTTCTAACTCTACTTAGAGTAAAAGGTGTGCTTCACTATGGAACAGCTGGAAATGCAAATCCTCACCTTGAAATTGAGGATGCAACAAGTCCTCGATATTGGGCTCATACATGCCTATGGAATTGGCACTTGCAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATCCGATGTGACCTCCATTGACACCAATAACTGCAGTAGTGGCACTCGTCTGTCTTCAACAAAAGATGCCCTTCATTGCAATTAG

Coding sequence (CDS)

ATTAATGCAAGAACAACCACGGAGCTGCTTCTAACTCTACTTAGAGTAAAAGGTGTGCTTCACTATGGAACAGCTGGAAATGCAAATCCTCACCTTGAAATTGAGGATGCAACAAGTCCTCGATATTGGGCTCATACATGCCTATGGAATTGGCACTTGCAGCGATTGAAGTTGGAAGGGTGTCTGAGTTCAACAAATTGCTTCCCAAGAGTGCCTGTAGCAGTGAGAGTGCAAAGAGGAGTCAGTGCCAATGTGTTTTTTCCCAATAAAGCTTACAAAGAGTTCTTGCATTCAACATCCGATGTGACCTCCATTGACACCAATAACTGCAGTAGTGGCACTCGTCTGTCTTCAACAAAAGATGCCCTTCATTGCAATTAG

Protein sequence

INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCSSGTRLSSTKDALHCN*

Homology

[Close]

BLAST of Cucsa.332420 vs. TrEMBL
Match: M7YX26_TRIUA (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Triticum urartu GN=TRIUR3_22088 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-24
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEG 60
           +NA  TT++LL+L RVKG++H+G AGNAN  L+I D T P YWAH  LWNW  Q ++L  
Sbjct: 100 LNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYWAHVSLWNW--QGMELPA 159

Query: 61  CLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCS 112
           C+++T C PR P   RV +G SANVF  N  Y++FL    + T ++  + +
Sbjct: 160 CVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFECTPVEMESAA 208

[Close]

BLAST of Cucsa.332420 vs. TrEMBL
Match: W9RMN4_9ROSA (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Morus notabilis GN=L484_007244 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 2   NARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEGC 61
           NA  TT+LLL+   ++GV+HYG AGNANP L I D   P+YW+HT LWNW  Q L+LEGC
Sbjct: 24  NAGITTQLLLSFFDMEGVVHYGIAGNANPSLNIGDVAVPQYWSHTALWNW--QDLELEGC 83

Query: 62  LSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCS 112
           L ST C    P    V +G SA+++  N AY+ F++   +++ +D  + S
Sbjct: 84  LDSTTCLSTTPKVYTVDKGTSASIYLDNAAYRGFIYRKFNISLVDMESAS 131

[Close]

BLAST of Cucsa.332420 vs. TrEMBL
Match: A0A061GJN3_THECC (Phosphorylase superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_037171 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-21
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWH-------- 60
           INA  TT+LLLTL +++GV+HYG A NANP L I D T P+YW+ T LW W         
Sbjct: 99  INAGITTQLLLTLFKIEGVVHYGIAVNANPSLNIGDVTIPKYWSQTSLWYWQRYGDGPSD 158

Query: 61  -----------------------LQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPN 112
                                     LKLEGCL+ST C    P  V VQRG S +VF  N
Sbjct: 159 ELTLESNGDYTRELGFLKFANFTTNDLKLEGCLNSTTCLDEQPRVVTVQRGTSGSVFLDN 218

[Close]

BLAST of Cucsa.332420 vs. TrEMBL
Match: A0A0D9Y5L1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-19
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWH-------- 60
           +NA  TT+LLL+L RVKG++H+G AGNA+  L+I D T P +WAH  LWNW         
Sbjct: 98  LNAGLTTQLLLSLFRVKGIVHWGIAGNADEGLQIGDVTIPEHWAHLSLWNWQRYGDGPEN 157

Query: 61  -LQR--------------------------LKLEGCLSSTNCFPRVPVAVRVQRGVSANV 112
            L R                          ++L  C+++T C PR P   RV+RG SANV
Sbjct: 158 ELPRSRPPATTPATSASSTSPTKPSRSHCGMELPACVNATTCLPRAPRVTRVRRGCSANV 217

[Close]

BLAST of Cucsa.332420 vs. TrEMBL
Match: A0A059CVB3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03808 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-14
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNW 52
           +NA  TTELLLTL  VKGVLHYG AGNANP+L+I D T P+YWAHT LWNW
Sbjct: 100 LNAGITTELLLTLFNVKGVLHYGIAGNANPNLQIGDVTIPQYWAHTGLWNW 150

[Close]

BLAST of Cucsa.332420 vs. TAIR10
Match: AT4G28940.1 (AT4G28940.1 Phosphorylase superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 5.4e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNW 52
           +NA  TT+LL++L R+KGVLHYG AGNA+ +LEI D T P+YWAH+ LWNW
Sbjct: 99  VNAGVTTQLLVSLFRLKGVLHYGIAGNADVNLEIGDVTIPQYWAHSGLWNW 149

HSP 2 Score: 47.8 bits (112), Expect = 6.0e-06
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 53  LQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCS 112
           L+  KL  C+++T C PR P    V+RG+SA+VF  N AY+ FL+S  + T+++  + +
Sbjct: 227 LEDTKLPQCVNTT-CLPRPPKVTIVKRGMSASVFIDNAAYRTFLNSKFNATAVEMESAA 284

[Close]

BLAST of Cucsa.332420 vs. TAIR10
Match: AT4G24340.1 (AT4G24340.1 Phosphorylase superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-06
Identity = 31/128 (24.22%), Postives = 56/128 (43.75%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEG 60
           +NA   T+ ++ +  VKG++H+G AGN N  + I D + P+   +  LW+W L   K +G
Sbjct: 108 VNAAAATQQMIDVFSVKGIVHFGIAGNINNSMSIGDVSIPKQITNAGLWDW-LNPGKAKG 167

Query: 61  -------------CLSSTNCFPRVPVAVRVQRGVSANVFFPNKAY-----KEFLHSTSDV 111
                             N    +  +      VS ++  P K +     +E+LH  +D+
Sbjct: 168 NEDVAYLDVGNYNVPQGNNKLGTIGYSYEELYSVSGHINSPKKVFWINTTQEWLHLAADL 227

HSP 2 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 23/85 (27.06%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 22  YGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEGCLSSTNCFPRVPVAVRVQRGV 81
           Y  +G+ N   ++    + + W H       L++++L  C++++ C P  P  V   +  
Sbjct: 198 YSVSGHINSPKKVFWINTTQEWLHLAA---DLEKMELLQCVNASLCLPNKPKVVVGLKAA 257

Query: 82  SANVFFPNKAYKEFLHSTSDVTSID 107
           +A++F  N AY+ FL+ T  V+S D
Sbjct: 258 TADIFVDNAAYRNFLYDTFGVSSSD 279

[Close]

BLAST of Cucsa.332420 vs. NCBI nr
Match: gi|473999626|gb|EMS52187.1| (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Triticum urartu])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEG 60
           +NA  TT++LL+L RVKG++H+G AGNAN  L+I D T P YWAH  LWNW  Q ++L  
Sbjct: 100 LNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYWAHVSLWNW--QGMELPA 159

Query: 61  CLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCS 112
           C+++T C PR P   RV +G SANVF  N  Y++FL    + T ++  + +
Sbjct: 160 CVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFECTPVEMESAA 208

[Close]

BLAST of Cucsa.332420 vs. NCBI nr
Match: gi|703112925|ref|XP_010100247.1| (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Morus notabilis])

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 2   NARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWHLQRLKLEGC 61
           NA  TT+LLL+   ++GV+HYG AGNANP L I D   P+YW+HT LWNW  Q L+LEGC
Sbjct: 24  NAGITTQLLLSFFDMEGVVHYGIAGNANPSLNIGDVAVPQYWSHTALWNW--QDLELEGC 83

Query: 62  LSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSIDTNNCS 112
           L ST C    P    V +G SA+++  N AY+ F++   +++ +D  + S
Sbjct: 84  LDSTTCLSTTPKVYTVDKGTSASIYLDNAAYRGFIYRKFNISLVDMESAS 131

[Close]

BLAST of Cucsa.332420 vs. NCBI nr
Match: gi|590573368|ref|XP_007012102.1| (Phosphorylase superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-21
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNWH-------- 60
           INA  TT+LLLTL +++GV+HYG A NANP L I D T P+YW+ T LW W         
Sbjct: 99  INAGITTQLLLTLFKIEGVVHYGIAVNANPSLNIGDVTIPKYWSQTSLWYWQRYGDGPSD 158

Query: 61  -----------------------LQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPN 112
                                     LKLEGCL+ST C    P  V VQRG S +VF  N
Sbjct: 159 ELTLESNGDYTRELGFLKFANFTTNDLKLEGCLNSTTCLDEQPRVVTVQRGTSGSVFLDN 218

[Close]

BLAST of Cucsa.332420 vs. NCBI nr
Match: gi|659125548|ref|XP_008462741.1| (PREDICTED: bark storage protein A [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNW 52
           +NA TTTELLLTL RVKGV+HYG AGNA+P LEI D T PRYWAHT LWNW
Sbjct: 100 LNAGTTTELLLTLFRVKGVIHYGIAGNADPQLEIGDVTIPRYWAHTGLWNW 150

[Close]

BLAST of Cucsa.332420 vs. NCBI nr
Match: gi|659125548|ref|XP_008462741.1| (PREDICTED: bark storage protein A [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 53  LQRLKLEGCLSSTNCFPRVPVAVRVQRGVSANVFFPNKAYKEFLHSTSDVTSID 107
           L+ LKLE CL+STNC PR P+AVRVQR VSANVF  NKAY+EFL ST +VTSID
Sbjct: 235 LEGLKLERCLNSTNCLPRAPIAVRVQRSVSANVFVDNKAYREFLQSTFNVTSID 288

HSP 2 Score: 85.9 bits (211), Expect = 5.6e-14
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   INARTTTELLLTLLRVKGVLHYGTAGNANPHLEIEDATSPRYWAHTCLWNW 52
           +NA  TTELLLTL  VKGVLHYG AGNANP+L+I D T P+YWAHT LWNW
Sbjct: 100 LNAGITTELLLTLFNVKGVLHYGIAGNANPNLQIGDVTIPQYWAHTGLWNW 150

The following BLAST results are available for this feature:

BLAST of Cucsa.332420 vs. TrEMBL


Match Name	E-value	Identity	Description
M7YX26_TRIUA	9.3e-24	46.85	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Triticum urartu GN...	[more]
W9RMN4_9ROSA	1.7e-22	46.36	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Morus notabilis GN...	[more]
A0A061GJN3_THECC	4.3e-21	40.85	Phosphorylase superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_037171 PE=...	[more]
A0A0D9Y5L1_9ORYZ	6.9e-19	36.99	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A0A059CVB3_EUCGR	3.9e-14	74.51	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03808 PE=4 SV=1	[more]

BLAST of Cucsa.332420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28940.1	5.4e-15	64.71	Phosphorylase superfamily protein	[more]
AT4G24340.1	4.6e-06	24.22	Phosphorylase superfamily protein	[more]

BLAST of Cucsa.332420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|473999626\|gb\|EMS52187.1\|	1.3e-23	46.85	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Triticum urartu]	[more]
gi\|703112925\|ref\|XP_010100247.1\|	2.5e-22	46.36	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Morus notabilis]	[more]
gi\|590573368\|ref\|XP_007012102.1\|	6.2e-21	40.85	Phosphorylase superfamily protein isoform 2 [Theobroma cacao]	[more]
gi\|659125548\|ref\|XP_008462741.1\|	3.9e-15	78.43	PREDICTED: bark storage protein A [Cucumis melo]	[more]
gi\|659125548\|ref\|XP_008462741.1\|	4.7e-13	74.07	PREDICTED: bark storage protein A [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000845	Nucleoside_phosphorylase_d
IPR018017	Nucleoside phosphorylase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009116	nucleoside metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009116	nucleoside metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.332420.1	Cucsa.332420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000845	Nucleoside phosphorylase domain	GENE3D	G3DSA:3.40.50.1580		coord: 2..106 score: 1.
IPR000845	Nucleoside phosphorylase domain	unknown	SSF53167	Purine and uridine phosphorylases	coord: 2..106 score: 2.
IPR018017	Nucleoside phosphorylase	PANTHER	PTHR21234	PURINE NUCLEOSIDE PHOSPHORYLASE	coord: 1..106 score: 2.7
None	No IPR available	PANTHER	PTHR21234:SF19	PHOSPHORYLASE SUPERFAMILY PROTEIN	coord: 1..106 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.332420	Cla004096	Watermelon (97103) v1	cgywmB600
Cucsa.332420	Csa1G696520	Cucumber (Chinese Long) v2	cgycuB470
Cucsa.332420	MELO3C024695	Melon (DHL92) v3.5.1	cgymeB544
Cucsa.332420	ClCG06G008820	Watermelon (Charleston Gray)	cgywcgB571
Cucsa.332420	CSPI01G33910	Wild cucumber (PI 183967)	cgycpiB496
Cucsa.332420	Lsi06G008490	Bottle gourd (USVL1VR-Ls)	cgylsiB541
Cucsa.332420	MELO3C024695.2	Melon (DHL92) v3.6.1	cgymedB545
Cucsa.332420	CsaV3_1G045800	Cucumber (Chinese Long) v3	cgycucB513
Cucsa.332420	Cla97C06G118570	Watermelon (97103) v2	cgywmbB575
Cucsa.332420	Bhi02G000979	Wax gourd	cgywgoB669

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.332420	Cucurbita pepo (Zucchini)	cgycpeB0871
Cucsa.332420	Silver-seed gourd	carcgyB0047
Cucsa.332420	Watermelon (97103) v2	cgywmbB576
Cucsa.332420	Cucurbita moschata (Rifu)	cgycmoB0911
Cucsa.332420	Watermelon (Charleston Gray)	cgywcgB572
Cucsa.332420	Watermelon (97103) v1	cgywmB599