Cucsa.332340 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.332340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S24
Locationscaffold03264 : 79485 .. 81727 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAGGTTTCATCACTATCTGATTCTTTCCTCTTTGCCGAACCTTCGTCTTCTTGCTCTCTGCTACGATTCACTTCACTTCACTTCATCCCATTCGTCAACGATAATGGCGGACAAGGCAGTCACCATACGAACCCGGAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCCGTTAATCACAACGAAAGATTGCTTTGAACTTTGAAGTCTCTCTTGGATTAGTTTCGTCAAGAAAAAAATTCAAAATTCGAGCCTCAGATCTCTATTACGCTTTTTCTTTTGTTTTATAAATTGCTTTAAAGTTTAAGATTCGACAATCCATATTCAAATTAATCAAATCCCGCTGTTTAAGTTATTTTTTGATATGATTCCCATTGGACCTCAGTTTTCATATGTAGCCCAGTTTAGTCCTTTAGTTTTATGTGCGTTCTCTTTGTCGAAAGTATTTACTCCGTTCGTGTCTGCTAACCTTATGTTATAAGTAGCTGACAATTGACTATATAGCTGGTTTTTTTTTTTTTTACTTTTCCTTTTAATCTTCTTCATTATGTACAACTTTATGTGAATGGTGGCTGCCAATCTATGATTTCATAGTCTAAGTATCTGCCAACCTTGCTGACAAAAAAGAACAAGCATATTTTATGAACAGGCCACGCTTTTCTTTTGTGCTTAGATGAACTGTATGGGTGTTCGTGTCCTTCTTTACACTGCTGGCTGAGAACATTCGGGGACTTCTACTCTTAAAGCCACAACATCATGACTATAGAGTCCAATATTTCCAATTTTTAGGCTTTAATTCTTACGGTTCCTTTTCCGGTTTGATGCAGGTCATTGATGTTCTTCACCCAGGAAGACCTAATGTCTCTAAGGTAAATTTTACTTACAGAAGTTATTGTTCATCTGCTTCAGCATAATTGCATTTCAGCGTGTGGATGCTTTCATAATGAATAAATCCAGCAATTATGTCTCACAGCCAATTTATCACAGTTCATTTTTAGAATTTTTTGCTTTCTTTAGTGTTTTATGCTCATTGCTGGATACATCGTTGAGTTAAATGGTTTTGAGTTTCAAGTATAACCGCATGTTAAATTGTCTGCCATTTGAATTTCACTTTTGTCTTTCTTATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGGTAATTTCTTTTACTTATTAATATTTTATATTTTCATCTTGTGAGTTGTGATTTTGTAGATCTTGATGGAGGACTTCTGTAGAGAATGAAGTAACTAGACAAAAATTGATAATTCTTTTATGAATAGAGGAATATTGCATTATTTGATTTGGAGAAAAAAATGAAGATAGAACCTTGTGGGAATTAAGCAAAATGGGGTAGAGGTGGACCTTTCAGTTTCATTTGAAATTTATCAAAAGGGGTGATGTGGAAAAACATAATGTTGACTTAAATTTGCTGGTGCAAGACGTTTACTCTTTTTAACAGTCATATTTGATAAAAGGCCATGAATCATTATATCTTTGCAATTTTGATTCACTATTTATCAAAGTAGTTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATCAAGTGTTATTTTGTATACAGAATGGGCTTGACACTAAAGTGGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAACAGAGCGAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAGAACCTTCTCCTTCTTCTTGTTGGAGTTTCTAGATATGCAAATAACAGAATGTTTAATACTGGCTGCAATTTCTTTTTTCTTTTTTGTTTTACCAGACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGAGTTCACTTCTATGTTTTCGTGCCTAAGTGTTTTTCTCTATCATGTCTTTATTTCATCCCTCTCTAAATTTTAATTCTTAAGTGGTGTTGGGCACTGCCAATGAAATCCATGTCTGGTTGATTATTGACACCAATGTTTTAGCCATTAATTTTGAATTTGGGGAGTTTTTTGCAGGGAACAATTTTGACATTAGTGACCATATATTTTATAGTTATCAAAAGTTTCATTATAAAAAGTGGTTGAAGTTGTGTTTTGCTT

mRNA sequence

TCAAGGTTTCATCACTATCTGATTCTTTCCTCTTTGCCGAACCTTCGTCTTCTTGCTCTCTGCTACGATTCACTTCACTTCACTTCATCCCATTCGTCAACGATAATGGCGGACAAGGCAGTCACCATACGAACCCGGAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCTAATGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGGCTTGACACTAAAGTGGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAACAGAGCGAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGAGTTCACTTCTATGTTTTCGTGCCTAAGTGTTTTTCTCTATCATGTCTTTATTTCATCCCTCTCTAAATTTTAATTCTTAAGTGGTGTTGGGCACTGCCAATGAAATCCATGTCTGGTTGATTATTGACACCAATGTTTTAGCCATTAATTTTGAATTTGGGGAGTTTTTTGCAGGGAACAATTTTGACATTAGTGACCATATATTTTATAGTTATCAAAAGTTTCATTATAAAAAGTGGTTGAAGTTGTGTTTTGCTT

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATACGAACCCGGAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCTAATGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGGCTTGACACTAAAGTGGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAACAGAGCGAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK*
Homology
[Close]
BLAST of Cucsa.332340 vs. Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.2e-63
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]
BLAST of Cucsa.332340 vs. Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 5.1e-61
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]
BLAST of Cucsa.332340 vs. Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-41
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]
BLAST of Cucsa.332340 vs. Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-39
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKGGKKK 138
                   GKKK
Sbjct: 125 NVG----AGKKK 131

[Close]
BLAST of Cucsa.332340 vs. Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-39
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKGGKKK 138
                   GKKK
Sbjct: 125 NVG----AGKKK 131

[Close]
BLAST of Cucsa.332340 vs. TrEMBL
Match: A0A0A0LYE3_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.2e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsa.332340 vs. TrEMBL
Match: A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsa.332340 vs. TrEMBL
Match: E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-68
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsa.332340 vs. TrEMBL
Match: A0A068U2P0_COFCA (40S ribosomal protein S24 OS=Coffea canephora GN=GSCOC_T00037054001 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-67
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKA DAAKGGKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

[Close]
BLAST of Cucsa.332340 vs. TrEMBL
Match: A0A0F7G7L7_9ROSI (40S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+R+Y+VKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsa.332340 vs. TAIR10
Match: AT3G04920.1 (AT3G04920.1 Ribosomal protein S24e family protein)

HSP 1 Score: 240.7 bits (613), Expect = 5.2e-64
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]
BLAST of Cucsa.332340 vs. TAIR10
Match: AT5G28060.1 (AT5G28060.1 Ribosomal protein S24e family protein)

HSP 1 Score: 235.0 bits (598), Expect = 2.9e-62
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]
BLAST of Cucsa.332340 vs. NCBI nr
Match: gi|449449533|ref|XP_004142519.1| (PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 6.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsa.332340 vs. NCBI nr
Match: gi|659125520|ref|XP_008462725.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 3.9e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsa.332340 vs. NCBI nr
Match: gi|449442901|ref|XP_004139219.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 6.6e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsa.332340 vs. NCBI nr
Match: gi|659070580|ref|XP_008455742.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsa.332340 vs. NCBI nr
Match: gi|747071407|ref|XP_011082571.1| (PREDICTED: 40S ribosomal protein S24-1 [Sesamum indicum])

HSP 1 Score: 265.8 bits (678), Expect = 4.3e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKA DAAKGGKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

The following BLAST results are available for this feature:
BLAST of Cucsa.332340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS241_ARATH9.2e-6390.1540S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1[more]
RS242_ARATH5.1e-6187.1240S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2[more]
RS24_SPOFR2.0e-4163.6440S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1[more]
RS24_BOVIN1.4e-3964.3940S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2[more]
RS24_PONAB1.4e-3964.3940S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1[more]
BLAST of Cucsa.332340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYE3_CUCSA4.2e-70100.0040S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1[more]
A0A0A0LFK1_CUCSA4.6e-6998.5440S ribosomal protein S24 OS=Cucumis sativus GN=Csa_2G012120 PE=3 SV=1[more]
E5GBS0_CUCME1.0e-6897.8140S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A068U2P0_COFCA1.9e-6795.6240S ribosomal protein S24 OS=Coffea canephora GN=GSCOC_T00037054001 PE=3 SV=1[more]
A0A0F7G7L7_9ROSI2.5e-6795.6240S ribosomal protein S24 OS=Betula luminifera PE=2 SV=1[more]
BLAST of Cucsa.332340 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04920.15.2e-6490.15 Ribosomal protein S24e family protein[more]
AT5G28060.12.9e-6287.12 Ribosomal protein S24e family protein[more]
BLAST of Cucsa.332340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449533|ref|XP_004142519.1|6.0e-70100.00PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus][more]
gi|659125520|ref|XP_008462725.1|3.9e-6998.54PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo][more]
gi|449442901|ref|XP_004139219.1|6.6e-6998.54PREDICTED: 40S ribosomal protein S24-1 [Cucumis sativus][more]
gi|659070580|ref|XP_008455742.1|1.5e-6897.81PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo][more]
gi|747071407|ref|XP_011082571.1|4.3e-6897.08PREDICTED: 40S ribosomal protein S24-1 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001976Ribosomal_S24e
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR018098Ribosomal_S24e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.332340.1Cucsa.332340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 14..86
score: 6.0
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 4..106
score: 19
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 1..137
score: 5.5E
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 25..103
score: 3.3
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 6..108
score: 4.9
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 6..108
score: 1.9
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 66..88
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.332340Csa1G696420Cucumber (Chinese Long) v2cgycuB470
Cucsa.332340MELO3C024684Melon (DHL92) v3.5.1cgymeB544
Cucsa.332340ClCG06G009050Watermelon (Charleston Gray)cgywcgB572
Cucsa.332340CSPI01G33820Wild cucumber (PI 183967)cgycpiB496
Cucsa.332340Lsi06G008130Bottle gourd (USVL1VR-Ls)cgylsiB540
Cucsa.332340MELO3C024684.2Melon (DHL92) v3.6.1cgymedB545
Cucsa.332340CsaV3_1G045700Cucumber (Chinese Long) v3cgycucB513
Cucsa.332340Cla97C06G118860Watermelon (97103) v2cgywmbB576
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.332340Wax gourdcgywgoB669