Cla97C06G118860 (gene) Watermelon (97103) v2

Overview
NameCla97C06G118860
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description40S ribosomal protein S24
LocationCla97Chr06 : 13341315 .. 13343412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCCTTCTTTTCTTTTCTACGTTTTATCAATAACGAAAGATTGGTTTTCAACTTTGAAGTCTTTCTCGGATTAGTTTCGTTAAGGAGAAATTCAGTATTCGAACCTCATATCTCTATTACGCGTTTCCTTTGTTTTATAAATTGGTTTGAAGTATAAGATTCAACAACCCATATTCAAATTAATGCAATCCTGTTGAATAAGTTTCTTTTTAATGATTCCCATTTGACCCCAGTTTTCATATGCAGCCCAATCTAATTCTATAGTTTGATATTCGTTCTCTTTGTCGACATTTATCCCATTCATATCTGCTAAGCTTCTGTTATAACTAGCTGACAATTGTATATATGCTTTGTGATTTTGTGCTTTTTCTTTGAATCTTCACAATGTACAAGTCTTGTGTGAATGGTGGCTGCCTATCTGTGATTTCATATCCTATGGGATTCCTTTCGCGACCAGAAATTTAGTAGGGTTAGACCGGACACCCGCAGATGTTAAAAGCATGTTAAAACATGCTACGCTTTTCTTTTGTGCTTAGATGAACTGTACTGGTGTTCGTGTCCTTTTGTGCTCTACTGGCTTGGGAGTTCTACGCTTAAAACCACAACACCATGACAATGGAGTCCAATACTTCCAATTTATAGGCTTTAGTTCTTACTGTTCCTTTTCTGGATTGATGCAGATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGTAAGTCGATTTTAGTTATGGAAGTGATTGTGCTTCTGCTTTAGAGTAATGCTTTCATAATGAATGAATCCAGCAATGTCTTACGGCCAATTTATCACATTTCATATTTAGAATTTATGCTTTCTACGGATAGATTGTTGAGTTTAATGGTTTTGAGTTTCAAGTCTGGTTGCATGTTAAATTATCTGCTCATTTGATTTCACTTTTGTCTTTTTGATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGGTAATTTCTTTTCCTTGTTATTTACACCGCCTTTTCCCTTTTGTTCCATTGTAGGCTTTTACCTGCACACATTCTATTGGATGAAATATTCTAATCAGTACTGTTAACTAATGGATTCAATATTACTAGTTTAAAAAGTATGGACACTGCTTTGAGCACTGTGTGTTGAACATGCGTGGTGTACACATGTTGAGTTCTGATTTGGCAGGGGACAAAGAAATGTAGGTGTGGAGGGTAGGGGGGAATATTAGGATGCAATTGGTTCATATGGAGGACTTGCGTAGAGAATGAAGTAACAAGACAAAAATTGATAGTTCTTTTATGAATAGAGGAATATTGCATCATTTTATTTGGAGAAGAAAAAAGATGAAACCCTATTGAAACTAAGCAAAAGGGGGGGGGGGGGGGTAGGGGTGGACTTTTCGGTTTCACTTGAATGTATCATTAGGAGTGATGTGGGAAAATATAATGTTTGAGATGCAGGTTTCTTTGTTTGAAATATTTGAGGGATACTTGACTTCAATTTGCCGTCAAAGATGTTTAGTCTTTATAAGAGTCATATTTGATAAAAGGCCATGAATAATTATATCTTTACAATTATGGTTCACTATTTTCAAAATAGTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATCAAGTGTTATTTTCTTTACAGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAAACCCTTCTTTTTATTGTTTGAGTTTCTAAATTTGAAAATAGCAGTGTTTAATATTAGCTGCAACTTCCCCTTTCGTTTTACCAGACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

mRNA sequence

ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATCATTGATGTTCTACACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Homology
[Close]
BLAST of Cla97C06G118860 vs. NCBI nr
Match: XP_008462725.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.4e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. NCBI nr
Match: XP_004142519.1 (PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus] >KGN66808.1 hypothetical protein Csa_1G696420 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo])

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. NCBI nr
Match: KZV25444.1 (hypothetical protein F511_17222 [Dorcoceras hygrometricum])

HSP 1 Score: 206.5 bits (524), Expect = 6.0e-50
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLAR+YDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. TrEMBL
Match: tr|A0A1S3CHL4|A0A1S3CHL4_CUCME (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. TrEMBL
Match: tr|A0A0A0LYE3|A0A0A0LYE3_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. TrEMBL
Match: tr|A0A1S3C1J8|A0A1S3C1J8_CUCME (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. TrEMBL
Match: tr|E5GBS0|E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. TrEMBL
Match: tr|A0A0A0LFK1|A0A0A0LFK1_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.1e-50
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 104

[Close]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match: sp|Q9SS17|RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-48
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match: sp|Q8LC83|RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 2.5e-47
Identity = 90/104 (86.54%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

[Close]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match: sp|Q75K27|RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           M   AV +RTRK +TNRLLSRKQF+++V+HPG+ NVSK +LK  +A+++ V D   IF+F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T FGGGKSTGFGLIYD++E AKKYEPKYRL R GL TK
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTK 101

[Close]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match: sp|Q962Q6|RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-30
Identity = 64/101 (63.37%), Postives = 82/101 (81.19%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ + DVLHPG+P VSK E++EKLA++Y V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK 102
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 100

[Close]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match: sp|P0CX31|RS24A_YEAST (40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS24A PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 5   AVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRT 64
           AVTIRTRK ++N LL+RKQF++DVLHP R NVSK EL+EKLA +Y   + +A+ VF FRT
Sbjct: 4   AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRT 63

Query: 65  HFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
            FGGGKS GFGL+Y+SV  AKK+EP YRL+R GL  KVEK
Sbjct: 64  QFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEK 102

[Close]
BLAST of Cla97C06G118860 vs. TAIR10
Match: AT3G04920.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-50
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104

[Close]
BLAST of Cla97C06G118860 vs. TAIR10
Match: AT5G28060.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-48
Identity = 90/104 (86.54%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEK 105
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EK
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEK 104

The following BLAST results are available for this feature:
BLAST of Cla97C06G118860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462725.15.4e-51100.00PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo][more]
XP_004142519.17.0e-5199.04PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus] >KGN66808.1 hypoth... [more]
XP_022933090.17.0e-5199.0440S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso... [more]
XP_008455742.12.0e-5099.04PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >ADN33912.1 40S ribosomal ... [more]
KZV25444.16.0e-5097.12hypothetical protein F511_17222 [Dorcoceras hygrometricum][more]
BLAST of Cla97C06G118860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CHL4|A0A1S3CHL4_CUCME3.6e-51100.0040S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1[more]
tr|A0A0A0LYE3|A0A0A0LYE3_CUCSA4.7e-5199.0440S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1[more]
tr|A0A1S3C1J8|A0A1S3C1J8_CUCME1.4e-5099.0440S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1[more]
tr|E5GBS0|E5GBS0_CUCME1.4e-5099.0440S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A0A0A0LFK1|A0A0A0LFK1_CUCSA5.1e-5097.1240S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1[more]
BLAST of Cla97C06G118860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SS17|RS241_ARATH1.3e-4889.4240S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1[more]
sp|Q8LC83|RS242_ARATH2.5e-4786.5440S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2[more]
sp|Q75K27|RS24_DICDI1.1e-3164.3640S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=... [more]
sp|Q962Q6|RS24_SPOFR1.2e-3063.3740S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1[more]
sp|P0CX31|RS24A_YEAST1.6e-3066.0040S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
BLAST of Cla97C06G118860 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04920.17.3e-5089.42Ribosomal protein S24e family protein[more]
AT5G28060.11.4e-4886.54Ribosomal protein S24e family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR018098Ribosomal_S24e_CS
IPR001976Ribosomal_S24e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0035556 intracellular signal transduction
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G118860.1Cla97C06G118860.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.70.3370coord: 1..134
e-value: 1.6E-62
score: 211.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..137
NoneNo IPR availablePANTHERPTHR10496:SF9SUBFAMILY NOT NAMEDcoord: 3..132
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 26..103
e-value: 9.9E-37
score: 124.7
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 3..132
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 14..86
e-value: 9.0E-33
score: 346.0
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 4..106
score: 19.603
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 66..88
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILYSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 6..108

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G118860Cla004124Watermelon (97103) v1wmwmbB406
Cla97C06G118860Csa1G696420Cucumber (Chinese Long) v2cuwmbB082
Cla97C06G118860MELO3C024684Melon (DHL92) v3.5.1mewmbB266
Cla97C06G118860ClCG06G009050Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G118860CSPI01G33820Wild cucumber (PI 183967)cpiwmbB083
Cla97C06G118860Cucsa.332340Cucumber (Gy14) v1cgywmbB576
Cla97C06G118860CmaCh11G009980Cucurbita maxima (Rimu)cmawmbB142
Cla97C06G118860CmoCh11G010160Cucurbita moschata (Rifu)cmowmbB125
Cla97C06G118860CsGy1G032380Cucumber (Gy14) v2cgybwmbB079
Cla97C06G118860MELO3C024684.2Melon (DHL92) v3.6.1medwmbB252
Cla97C06G118860Carg16497Silver-seed gourdcarwmbB0958
Cla97C06G118860CsaV3_1G045700Cucumber (Chinese Long) v3cucwmbB079
Cla97C06G118860Bhi02G001018Wax gourdwgowmbB661
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G118860Bottle gourd (USVL1VR-Ls)lsiwmbB378
Cla97C06G118860Melon (DHL92) v3.5.1mewmbB262
Cla97C06G118860Wax gourdwgowmbB651