Cucsa.313570 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.313570
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCytochrome c oxidase, subunit Vib family protein
Locationscaffold02995 : 2704831 .. 2706017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTCTCTTTCCTTAAATAAGTAGAAATGTCTTAGGTTGGATGCGTTAAGAAAGTAAATTTGCTATTTTTATAAAAAAAAaTAGCTTAATTCAACGATACTTTACATGATTTTTGTTtCTTTTTTtATGATGGAGGTGAGAGGTTGGGAATGTTCCAAAAACTGATGGAAATTTAACCCAAAACTACTGATCAACCAAAGGTGGTTATCAACATACTGATGAGGGAGAGAATAATATTATGTTTGTTCATATATCTAAATGGTGTTATAAATTTATAATATTGTATTTTAAATCGTTAAACACATTTAATCCTAAAGAATAACCAAGAATTTAGTACTTTTACTTCAAAAGAAGTTAGAATATTGTTTTtATCAGCTCCAATGGGTAGGTCGCAGTTAATTATTCGTCTGCCAAGTGAGTATCAGTAAACTAACTAATCATGAGAAATAAATACTACACAACGATTATAGTCTATAaTATGTACACTAGTGTATTTTCTCATTCTTCTTTTATATACACTCCAATTCATTCTTAACCAAACTCTCATCCATTTAACAGGACAGACTATCCACTTACAAAAAAGTTATATTTTGCGACCTTACCTAGAGTGAAAAGATCACCCACACACGTGAATATACTAAAGATAGCAATTCTCATACTTATTAGGGACCAAATTTATAATCTTTAACCGAGACTTTGAATCGTATGAGCGAACACAAAAGCTTAAAGGATGGTTAGTGTAAGTATATTATTCAGTGTAGAGATAGTATTTTTTTTTtAATCAATATATCTTATGAAGTTAGGGAGGTCGTGGGGGATTTGAAGTTTCGAATCAATGAAGAGTATCCCTTCACATTATAACATTGCATGTATAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAG

mRNA sequence

ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAG

Coding sequence (CDS)

ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAG

Protein sequence

MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHX
Homology
[Close]
BLAST of Cucsa.313570 vs. Swiss-Prot
Match: CX6BL_ARATH (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-19
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A          
Sbjct: 1   MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA---------- 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
            +RG   R+    ++E         RFP TN+TRHC+ R+++YH
Sbjct: 61  -KRGDSGRETDAAVEE---------RFPVTNETRHCFNRFMQYH 82

[Close]
BLAST of Cucsa.313570 vs. Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 1 

Query: 22  RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTA 81
           + E AP         S+ P  +  +        + N+D+    SE+   +   +  + TA
Sbjct: 68  KSESAPESTE---VASEAPAAAEDNAEETPAAAEENNDEN--ASEEVAEETPDEIKLETA 127

Query: 82  PSDIRFPFTNQTRHCYARYLEYH 105
           P+D RFP TNQTRHC+ RY+EYH
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYH 145

[Close]
BLAST of Cucsa.313570 vs. TrEMBL
Match: A0A0A0LEH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH
Sbjct: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 104

[Close]
BLAST of Cucsa.313570 vs. TrEMBL
Match: V7CH48_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G003400g PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-22
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSA+Q+DPHDKMR+RD++KVARG+QAPRPAH+YGTVS PPPPSS+  P    N +G  D 
Sbjct: 1   MSAAQVDPHDKMRARDVNKVARGQQAPRPAHQYGTVSPPPPPSSTHTPGDTNNKEGKSDI 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
             +G+E  ++            SD +      TRHCYA+Y+EYH
Sbjct: 61  SEKGAELAES------------SDYK------TRHCYAKYVEYH 86

[Close]
BLAST of Cucsa.313570 vs. TrEMBL
Match: B9SS20_RICCO (Cytochrome C oxidase polypeptide vib, putative OS=Ricinus communis GN=RCOM_0519940 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS ++++PHDKM+SRD++KVARGEQAPRP HE+G VSK P P                D+
Sbjct: 1   MSGAEVEPHDKMKSRDVNKVARGEQAPRPPHEHGHVSKIPSPPV--------------DN 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           + R  ED D   + D   GTAP+D RFP  NQTRHCY RYLEYH
Sbjct: 61  KHRLQEDEDEYELEDP--GTAPADARFPSMNQTRHCYTRYLEYH 88

[Close]
BLAST of Cucsa.313570 vs. TrEMBL
Match: A0A067LNB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11862 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-20
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 4   SQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRR 63
           +Q++PH+KMR+RD++KVARGEQAP+P H+YG + K P P   +    Q N          
Sbjct: 6   AQVEPHEKMRARDVNKVARGEQAPKPPHQYGHIDKTPSPPIHNKYPHQIN---------- 65

Query: 64  GSEDRDNKVVMDEG---VGTAPSDIRFPFTNQTRHCYARYLEYH 105
                 NK   +EG    GTAP+D+RFP TNQTRHCY RYLEYH
Sbjct: 66  ------NKENEEEGWVEAGTAPADVRFPTTNQTRHCYTRYLEYH 93

[Close]
BLAST of Cucsa.313570 vs. TrEMBL
Match: A0A072UCZ3_MEDTR (Cytochrome C oxidase, subunit VIb family protein OS=Medicago truncatula GN=MTR_5g013865 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-18
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS +Q+DPHDKMR+RD+SKVARGEQAPRP HE+GTVS PPPPSS++          N  D
Sbjct: 1   MSGAQVDPHDKMRARDLSKVARGEQAPRPPHEFGTVSPPPPPSSTN----------NTHD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEY 104
            +  +   +N    + G   +PS+       QTRHCY +Y+EY
Sbjct: 61  IKNNNNKGENARTAENG-SESPSN-----NYQTRHCYVKYVEY 87

[Close]
BLAST of Cucsa.313570 vs. TAIR10
Match: AT1G32710.1 (AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-20
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A          
Sbjct: 1   MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA---------- 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
            +RG   R+    ++E         RFP TN+TRHC+ R+++YH
Sbjct: 61  -KRGDSGRETDAAVEE---------RFPVTNETRHCFNRFMQYH 82

[Close]
BLAST of Cucsa.313570 vs. TAIR10
Match: AT1G22450.1 (AT1G22450.1 cytochrome C oxidase 6B)

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-08
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 1 

Query: 22  RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTA 81
           + E AP         S+ P  +  +        + N+D+    SE+   +   +  + TA
Sbjct: 68  KSESAPESTE---VASEAPAAAEDNAEETPAAAEENNDEN--ASEEVAEETPDEIKLETA 127

Query: 82  PSDIRFPFTNQTRHCYARYLEYH 105
           P+D RFP TNQTRHC+ RY+EYH
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYH 145

[Close]
BLAST of Cucsa.313570 vs. TAIR10
Match: AT4G28060.1 (AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1 

Query: 80  TAPSDIRFPFTNQTRHCYARYLEYH 105
           TAP+D RFP TNQTRHC+ RY+E+H
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFH 33

[Close]
BLAST of Cucsa.313570 vs. TAIR10
Match: AT5G57815.1 (AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1 

Query: 80  TAPSDIRFPFTNQTRHCYARYLEYH 105
           TAP+D RFP TNQTRHC+ RY+E+H
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFH 33

[Close]
BLAST of Cucsa.313570 vs. NCBI nr
Match: gi|700205302|gb|KGN60435.1| (hypothetical protein Csa_3G910720 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH
Sbjct: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 104

[Close]
BLAST of Cucsa.313570 vs. NCBI nr
Match: gi|659131908|ref|XP_008465918.1| (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 93/106 (87.74%), Postives = 97/106 (91.51%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD 
Sbjct: 1   MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT----NDDH 60

Query: 61  RRRGSE--DRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           RR GSE  D+DNKVVMDEGV TAPSD+RFPFTNQTRHCYARYLEYH
Sbjct: 61  RRSGSEDKDKDNKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYH 102

[Close]
BLAST of Cucsa.313570 vs. NCBI nr
Match: gi|593787154|ref|XP_007156616.1| (hypothetical protein PHAVU_002G003400g [Phaseolus vulgaris])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSA+Q+DPHDKMR+RD++KVARG+QAPRPAH+YGTVS PPPPSS+  P    N +G  D 
Sbjct: 1   MSAAQVDPHDKMRARDVNKVARGQQAPRPAHQYGTVSPPPPPSSTHTPGDTNNKEGKSDI 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
             +G+E  ++            SD +      TRHCYA+Y+EYH
Sbjct: 61  SEKGAELAES------------SDYK------TRHCYAKYVEYH 86

[Close]
BLAST of Cucsa.313570 vs. NCBI nr
Match: gi|223531792|gb|EEF33611.1| (cytochrome C oxidase polypeptide vib, putative [Ricinus communis])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS ++++PHDKM+SRD++KVARGEQAPRP HE+G VSK P P                D+
Sbjct: 1   MSGAEVEPHDKMKSRDVNKVARGEQAPRPPHEHGHVSKIPSPPV--------------DN 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           + R  ED D   + D   GTAP+D RFP  NQTRHCY RYLEYH
Sbjct: 61  KHRLQEDEDEYELEDP--GTAPADARFPSMNQTRHCYTRYLEYH 88

[Close]
BLAST of Cucsa.313570 vs. NCBI nr
Match: gi|1000947417|ref|XP_002528789.2| (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Ricinus communis])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS ++++PHDKM+SRD++KVARGEQAPRP HE+G VSK P P                D+
Sbjct: 24  MSGAEVEPHDKMKSRDVNKVARGEQAPRPPHEHGHVSKIPSPPV--------------DN 83

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYH 105
           + R  ED D   + D   GTAP+D RFP  NQTRHCY RYLEYH
Sbjct: 84  KHRLQEDEDEYELEDP--GTAPADARFPSMNQTRHCYTRYLEYH 111

The following BLAST results are available for this feature:
BLAST of Cucsa.313570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CX6BL_ARATH2.1e-1948.08Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g327... [more]
CX6B1_ARATH1.6e-0633.73Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1[more]
BLAST of Cucsa.313570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEH8_CUCSA1.9e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910720 PE=4 SV=1[more]
V7CH48_PHAVU9.4e-2251.92Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G003400g PE=4 SV=1[more]
B9SS20_RICCO1.2e-2153.85Cytochrome C oxidase polypeptide vib, putative OS=Ricinus communis GN=RCOM_05199... [more]
A0A067LNB2_JATCU6.7e-2050.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11862 PE=4 SV=1[more]
A0A072UCZ3_MEDTR2.8e-1849.51Cytochrome C oxidase, subunit VIb family protein OS=Medicago truncatula GN=MTR_5... [more]
BLAST of Cucsa.313570 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32710.11.2e-2048.08 Cytochrome c oxidase, subunit Vib family protein[more]
AT1G22450.19.0e-0833.73 cytochrome C oxidase 6B[more]
AT4G28060.12.2e-0672.00 Cytochrome c oxidase, subunit Vib family protein[more]
AT5G57815.12.2e-0672.00 Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of Cucsa.313570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205302|gb|KGN60435.1|2.7e-54100.00hypothetical protein Csa_3G910720 [Cucumis sativus][more]
gi|659131908|ref|XP_008465918.1|1.1e-4487.74PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo][more]
gi|593787154|ref|XP_007156616.1|1.3e-2151.92hypothetical protein PHAVU_002G003400g [Phaseolus vulgaris][more]
gi|223531792|gb|EEF33611.1|1.8e-2153.85cytochrome C oxidase polypeptide vib, putative [Ricinus communis][more]
gi|1000947417|ref|XP_002528789.2|1.8e-2153.85PREDICTED: putative cytochrome c oxidase subunit 6b-like [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003213Cyt_c_oxidase_su6B
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.313570.1Cucsa.313570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbGENE3DG3DSA:1.10.10.140coord: 76..104
score: 1.
IPR003213Cytochrome c oxidase, subunit VIbunknownSSF47694Cytochrome c oxidase subunit hcoord: 79..104
score: 1.8
NoneNo IPR availablePRODOMPD015172coord: 82..104
score: 3.
NoneNo IPR availablePANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 56..104
score: 9.9
NoneNo IPR availablePANTHERPTHR11387:SF17CYTOCHROME C OXIDASE SUBUNIT 6B-LIKE-RELATEDcoord: 56..104
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.313570Cla016134Watermelon (97103) v1cgywmB561
Cucsa.313570Csa3G910720Cucumber (Chinese Long) v2cgycuB450
Cucsa.313570MELO3C003366Melon (DHL92) v3.5.1cgymeB517
Cucsa.313570ClCG09G012420Watermelon (Charleston Gray)cgywcgB534
Cucsa.313570CSPI03G47170Wild cucumber (PI 183967)cgycpiB473
Cucsa.313570CmaCh19G003760Cucurbita maxima (Rimu)cgycmaB0868
Cucsa.313570CmoCh19G003780Cucurbita moschata (Rifu)cgycmoB0869
Cucsa.313570Lsi05G000440Bottle gourd (USVL1VR-Ls)cgylsiB506
Cucsa.313570Cp4.1LG09g06650Cucurbita pepo (Zucchini)cgycpeB0810
Cucsa.313570MELO3C003366.2Melon (DHL92) v3.6.1cgymedB517
Cucsa.313570CsaV3_3G049600Cucumber (Chinese Long) v3cgycucB487
Cucsa.313570Cla97C09G175290Watermelon (97103) v2cgywmbB549
Cucsa.313570Bhi05G000352Wax gourdcgywgoB626
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.313570Silver-seed gourdcarcgyB0641
Cucsa.313570Silver-seed gourdcarcgyB0790
Cucsa.313570Silver-seed gourdcarcgyB0890
Cucsa.313570Cucumber (Chinese Long) v3cgycucB488
Cucsa.313570Cucumber (Chinese Long) v3cgycucB489
Cucsa.313570Watermelon (97103) v2cgywmbB538
Cucsa.313570Watermelon (97103) v2cgywmbB542
Cucsa.313570Wax gourdcgywgoB622
Cucsa.313570Wax gourdcgywgoB623
Cucsa.313570Wax gourdcgywgoB625
Cucsa.313570Cucumber (Gy14) v1cgycgyB127
Cucsa.313570Cucumber (Gy14) v1cgycgyB146
Cucsa.313570Cucurbita maxima (Rimu)cgycmaB0861
Cucsa.313570Cucurbita maxima (Rimu)cgycmaB0869
Cucsa.313570Cucurbita maxima (Rimu)cgycmaB0870
Cucsa.313570Cucurbita maxima (Rimu)cgycmaB0878
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0859
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0860
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0867
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0868
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0870
Cucsa.313570Cucurbita moschata (Rifu)cgycmoB0875
Cucsa.313570Wild cucumber (PI 183967)cgycpiB474
Cucsa.313570Cucumber (Chinese Long) v2cgycuB451
Cucsa.313570Melon (DHL92) v3.5.1cgymeB518
Cucsa.313570Watermelon (Charleston Gray)cgywcgB535
Cucsa.313570Watermelon (Charleston Gray)cgywcgB540
Cucsa.313570Watermelon (97103) v1cgywmB563
Cucsa.313570Watermelon (97103) v1cgywmB569
Cucsa.313570Cucurbita pepo (Zucchini)cgycpeB0815
Cucsa.313570Cucurbita pepo (Zucchini)cgycpeB0826
Cucsa.313570Bottle gourd (USVL1VR-Ls)cgylsiB508
Cucsa.313570Bottle gourd (USVL1VR-Ls)cgylsiB510
Cucsa.313570Melon (DHL92) v3.6.1cgymedB518
Cucsa.313570Melon (DHL92) v3.6.1cgymedB519