CmoCh19G003780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Cytochrome c oxidase subunit 6b-1) (1.9.3.1)
LocationCmo_Chr19 : 3768757 .. 3769863 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAACTTAAATAAATAAATAAATAATCGAAAAAAAAGGCGAAGCAATAACAACAGTAATAATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACAGCGATCGCCGCCACGGTGGCAAAGACAAAGACAGTAAGGTCGGAAAATTTTTTAGTAATAAATACTAATATCAAGTATGATATTGTCCGCTTTGAATCTAAATTCTAGTGATTTTGTTTTAGGCTTTCCCGTATTCTTTGATTATAAATTTATATTATTCCCTAAATTAGCAGTGCCGGACTTTTCTTCCACCGTTCTAGAAAAAGAAAATAGAATTTAAATAATAATTTTTTAATTTTTTATAATTATTGATGGATATTAATAATTTTTTTTTTAATTTAAGAATATTTTTTAAATAATGATTTTTGTTTAGAATAAAGTATTTTATATATTTTTTAATTTAAATATATTATTATTTTTAAAGTAAGCAATATTGTATAATGAGGGTGTAGTAGGTGGTGGTGGAAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGGTAAATTATAATTACTATACACTTCATTATTAATCCATAATCTTCTACCACGTTTAATTTATTTTAGTTCAATTCTTTTAGCTCCCTACAGAAGAAGGGGGAACACGCGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTGTGCCCCGTAGAATGGGTAACTCAAATTATTTACGTTTCTACTAACTTATTTACAGTATTTACATTTTTAAAAATTGTGTTGAACAATATATTATTATCTTATTTTTTTAAATAGGAAGTTCGATTAACGATATATTATTATCTATCTATTAAAATTTGAATTTTCAATTTCGCTCATTTAGTTTTTGTTGATGTAGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA

mRNA sequence

TTATAACTTAAATAAATAAATAAATAATCGAAAAAAAAGGCGAAGCAATAACAACAGTAATAATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACAGCGATCGCCGCCACGGTGGCAAAGACAAAGACAGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTCCCTACAGAAGAAGGGGGAACACGCGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTGTGCCCCGTAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA

Coding sequence (CDS)

ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACAGCGATCGCCGCCACGGTGGCAAAGACAAAGACAGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTCCCTACAGAAGAAGGGGGAACACGCGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTGTGCCCCGTAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA
Homology
[Close]
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-28
Identity = 66/134 (49.25%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 22  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEEG--- 81
           PV E  +V    S+  P S+  AS A    + N++      +++     S+ V EE    
Sbjct: 57  PVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAEETPDE 116

Query: 82  --VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEK 141
             +ETAP D RFP TNQTRHC+TRY+EYH  +  KG+ APECDKFAK+YRSLCP EW+++
Sbjct: 117 IKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDR 176

[Close]
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match: CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-26
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 70  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWN 129
           ++TAP D RFP TNQTRHC+TRY+E+H     KGE A EC++FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 130 EQRELGIFPGPI 142
           EQRE G FPGP+
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match: CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-26
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 70  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWN 129
           ++TAP D RFP TNQTRHC+TRY+E+H     KGE + +C++FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 130 EQRELGIFPGPI 142
           EQRE G FPGP+
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match: CX6BL_ARATH (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-19
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           R RDISKVARG+QAPRP H  GTVS  PPP + +   A          + G   +++   
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA----------KRGDSGRETDAA 72

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
           VEE         RFP TN+TRHC+ R+++YH  ++K G  A +C+    Y RS+CP E +
Sbjct: 73  VEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELV 113

Query: 126 EK 128
            K
Sbjct: 133 SK 113

[Close]
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-17
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 76  DMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELG 135
           D RFP TNQT+HC+  Y++Y   ++ KGE    C +F   Y+SLCP+EW+E+W+EQRE G
Sbjct: 21  DARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENG 80

Query: 136 IFPGPI 142
            FP PI
Sbjct: 81  TFPAPI 86

[Close]
BLAST of CmoCh19G003780 vs. TrEMBL
Match: A0A0A0LEH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-60
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD-RRHGGKDKDSKV 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN D RR G +D+D+KV
Sbjct: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV 72

Query: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEW 125
           V++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGEHAPEC KFAKYYRSLCP EW
Sbjct: 73  VMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEW 132

Query: 126 IEKWNEQRELGIFPGPI 142
           +EKWNEQRELG+FPGP+
Sbjct: 133 VEKWNEQRELGVFPGPM 149

[Close]
BLAST of CmoCh19G003780 vs. TrEMBL
Match: B9SS20_RICCO (Cytochrome C oxidase polypeptide vib, putative OS=Ricinus communis GN=RCOM_0519940 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 80/136 (58.82%), Postives = 95/136 (69.85%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           + RD++KVARGEQAPRP HE+G VSK P P   +    Q             +D+D   +
Sbjct: 13  KSRDVNKVARGEQAPRPPHEHGHVSKIPSPPVDNKHRLQ-------------EDEDEYEL 72

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
            + G  TAP D RFP  NQTRHCYTRYLEYH  +Q+KG+ APEC KFAKYYRSLCPVEW+
Sbjct: 73  EDPG--TAPADARFPSMNQTRHCYTRYLEYHKCIQEKGKDAPECGKFAKYYRSLCPVEWV 132

Query: 126 EKWNEQRELGIFPGPI 142
           E+WNEQRE+G FPGPI
Sbjct: 133 ERWNEQREMGTFPGPI 133

[Close]
BLAST of CmoCh19G003780 vs. TrEMBL
Match: A0A067LNB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11862 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           R RD++KVARGEQAP+P H+YG + K P P   +    Q N           K+ + +  
Sbjct: 15  RARDVNKVARGEQAPKPPHQYGHIDKTPSPPIHNKYPHQIN----------NKENEEEGW 74

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
           VE G  TAP D+RFP TNQTRHCYTRYLEYH  +++KG+ A EC+KFAKYYRS CP EWI
Sbjct: 75  VEAG--TAPADVRFPTTNQTRHCYTRYLEYHKCIKEKGKDATECEKFAKYYRSFCPDEWI 134

Query: 126 EKWNEQRELGIFPGPI 142
           E+WN+QRE G F GPI
Sbjct: 135 ERWNDQRENGTFAGPI 138

[Close]
BLAST of CmoCh19G003780 vs. TrEMBL
Match: V4SHN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002573mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 67/128 (52.34%), Postives = 84/128 (65.62%), Query Frame = 1 

Query: 17  EQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD---RRHGGKDKDSKVVVEEGVETA 76
           E AP P  E  T +    P  S++ +A    + +S+     + G  + S+   E  +ETA
Sbjct: 65  EDAPAPAAEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPEIKLETA 124

Query: 77  PNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRE 136
           P D RFP TNQTRHC+TRY+EYH  +  KGE APECDKFAKYYR+LCP +WIEKWNEQRE
Sbjct: 125 PADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRE 184

Query: 137 LGIFPGPI 142
            G FPGP+
Sbjct: 185 NGTFPGPL 192

[Close]
BLAST of CmoCh19G003780 vs. TrEMBL
Match: A0A067GN17_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029538mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1 

Query: 17  EQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD---RRHGGKDKDSKVVVEEGVETA 76
           E AP P  E  T +    P  S++ +A    + +S+     + G  + S+   +  +ETA
Sbjct: 65  EDAPAPAPEESTEASSASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETA 124

Query: 77  PNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRE 136
           P D RFP TNQTRHC+TRY+EYH  +  KGE APECDKFAKYYR+LCP +WIEKWNEQRE
Sbjct: 125 PADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRE 184

Query: 137 LGIFPGPI 142
            G FPGP+
Sbjct: 185 NGTFPGPL 192

[Close]
BLAST of CmoCh19G003780 vs. TAIR10
Match: AT1G22450.1 (AT1G22450.1 cytochrome C oxidase 6B)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 66/134 (49.25%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 22  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEEG--- 81
           PV E  +V    S+  P S+  AS A    + N++      +++     S+ V EE    
Sbjct: 57  PVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAEETPDE 116

Query: 82  --VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEK 141
             +ETAP D RFP TNQTRHC+TRY+EYH  +  KG+ APECDKFAK+YRSLCP EW+++
Sbjct: 117 IKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDR 176

[Close]
BLAST of CmoCh19G003780 vs. TAIR10
Match: AT4G28060.1 (AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 120.6 bits (301), Expect = 8.0e-28
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 70  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWN 129
           ++TAP D RFP TNQTRHC+TRY+E+H     KGE A EC++FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 130 EQRELGIFPGPI 142
           EQRE G FPGP+
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of CmoCh19G003780 vs. TAIR10
Match: AT5G57815.1 (AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-27
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 70  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWN 129
           ++TAP D RFP TNQTRHC+TRY+E+H     KGE + +C++FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 130 EQRELGIFPGPI 142
           EQRE G FPGP+
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of CmoCh19G003780 vs. TAIR10
Match: AT1G32710.1 (AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-20
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           R RDISKVARG+QAPRP H  GTVS  PPP + +   A          + G   +++   
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA----------KRGDSGRETDAA 72

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
           VEE         RFP TN+TRHC+ R+++YH  ++K G  A +C+    Y RS+CP E +
Sbjct: 73  VEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELV 113

Query: 126 EK 128
            K
Sbjct: 133 SK 113

[Close]
BLAST of CmoCh19G003780 vs. NCBI nr
Match: gi|700205302|gb|KGN60435.1| (hypothetical protein Csa_3G910720 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 5.7e-60
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD-RRHGGKDKDSKV 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN D RR G +D+D+KV
Sbjct: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV 72

Query: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEW 125
           V++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGEHAPEC KFAKYYRSLCP EW
Sbjct: 73  VMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEW 132

Query: 126 IEKWNEQRELGIFPGPI 142
           +EKWNEQRELG+FPGP+
Sbjct: 133 VEKWNEQRELGVFPGPM 149

[Close]
BLAST of CmoCh19G003780 vs. NCBI nr
Match: gi|659131908|ref|XP_008465918.1| (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 109/138 (78.99%), Postives = 119/138 (86.23%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGG--KDKDSK 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTN D    RR G   KDKD+K
Sbjct: 13  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDD---HRRSGSEDKDKDNK 72

Query: 66  VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVE 125
           VV++EGVETAP+D+RFPFTNQTRHCY RYLEYH  +QKKGEHAPEC KFA YYRSLCP E
Sbjct: 73  VVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFANYYRSLCPGE 132

Query: 126 WIEKWNEQRELGIFPGPI 142
           W+EKWNEQRELG+FPGPI
Sbjct: 133 WVEKWNEQRELGVFPGPI 147

[Close]
BLAST of CmoCh19G003780 vs. NCBI nr
Match: gi|223531792|gb|EEF33611.1| (cytochrome C oxidase polypeptide vib, putative [Ricinus communis])

HSP 1 Score: 162.5 bits (410), Expect = 5.2e-37
Identity = 80/136 (58.82%), Postives = 95/136 (69.85%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           + RD++KVARGEQAPRP HE+G VSK P P   +    Q             +D+D   +
Sbjct: 13  KSRDVNKVARGEQAPRPPHEHGHVSKIPSPPVDNKHRLQ-------------EDEDEYEL 72

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
            + G  TAP D RFP  NQTRHCYTRYLEYH  +Q+KG+ APEC KFAKYYRSLCPVEW+
Sbjct: 73  EDPG--TAPADARFPSMNQTRHCYTRYLEYHKCIQEKGKDAPECGKFAKYYRSLCPVEWV 132

Query: 126 EKWNEQRELGIFPGPI 142
           E+WNEQRE+G FPGPI
Sbjct: 133 ERWNEQREMGTFPGPI 133

[Close]
BLAST of CmoCh19G003780 vs. NCBI nr
Match: gi|1000947417|ref|XP_002528789.2| (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Ricinus communis])

HSP 1 Score: 162.5 bits (410), Expect = 5.2e-37
Identity = 80/136 (58.82%), Postives = 95/136 (69.85%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           + RD++KVARGEQAPRP HE+G VSK P P   +    Q             +D+D   +
Sbjct: 36  KSRDVNKVARGEQAPRPPHEHGHVSKIPSPPVDNKHRLQ-------------EDEDEYEL 95

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
            + G  TAP D RFP  NQTRHCYTRYLEYH  +Q+KG+ APEC KFAKYYRSLCPVEW+
Sbjct: 96  EDPG--TAPADARFPSMNQTRHCYTRYLEYHKCIQEKGKDAPECGKFAKYYRSLCPVEWV 155

Query: 126 EKWNEQRELGIFPGPI 142
           E+WNEQRE+G FPGPI
Sbjct: 156 ERWNEQREMGTFPGPI 156

[Close]
BLAST of CmoCh19G003780 vs. NCBI nr
Match: gi|802540185|ref|XP_012075107.1| (PREDICTED: cytochrome c oxidase subunit 6b-3-like [Jatropha curcas])

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-34
Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 1 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVV 65
           R RD++KVARGEQAP+P H+YG + K P P   +    Q N           K+ + +  
Sbjct: 15  RARDVNKVARGEQAPKPPHQYGHIDKTPSPPIHNKYPHQIN----------NKENEEEGW 74

Query: 66  VEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWI 125
           VE G  TAP D+RFP TNQTRHCYTRYLEYH  +++KG+ A EC+KFAKYYRS CP EWI
Sbjct: 75  VEAG--TAPADVRFPTTNQTRHCYTRYLEYHKCIKEKGKDATECEKFAKYYRSFCPDEWI 134

Query: 126 EKWNEQRELGIFPGPI 142
           E+WN+QRE G F GPI
Sbjct: 135 ERWNDQRENGTFAGPI 138

The following BLAST results are available for this feature:
BLAST of CmoCh19G003780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CX6B1_ARATH2.6e-2849.25Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1[more]
CX6B3_ARATH1.4e-2666.67Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2[more]
CX6B2_ARATH7.1e-2663.89Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1[more]
CX6BL_ARATH8.4e-1941.80Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g327... [more]
COX12_SCHPO6.0e-1753.03Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
BLAST of CmoCh19G003780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEH8_CUCSA4.0e-6081.02Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910720 PE=4 SV=1[more]
B9SS20_RICCO3.6e-3758.82Cytochrome C oxidase polypeptide vib, putative OS=Ricinus communis GN=RCOM_05199... [more]
A0A067LNB2_JATCU1.3e-3455.88Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11862 PE=4 SV=1[more]
V4SHN7_9ROSI1.3e-2952.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002573mg PE=4 SV=1[more]
A0A067GN17_CITSI2.8e-2951.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029538mg PE=4 SV=1[more]
BLAST of CmoCh19G003780 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22450.11.5e-2949.25 cytochrome C oxidase 6B[more]
AT4G28060.18.0e-2866.67 Cytochrome c oxidase, subunit Vib family protein[more]
AT5G57815.14.0e-2763.89 Cytochrome c oxidase, subunit Vib family protein[more]
AT1G32710.14.7e-2041.80 Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of CmoCh19G003780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205302|gb|KGN60435.1|5.7e-6081.02hypothetical protein Csa_3G910720 [Cucumis sativus][more]
gi|659131908|ref|XP_008465918.1|1.3e-5678.99PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo][more]
gi|223531792|gb|EEF33611.1|5.2e-3758.82cytochrome C oxidase polypeptide vib, putative [Ricinus communis][more]
gi|1000947417|ref|XP_002528789.2|5.2e-3758.82PREDICTED: putative cytochrome c oxidase subunit 6b-like [Ricinus communis][more]
gi|802540185|ref|XP_012075107.1|1.9e-3455.88PREDICTED: cytochrome c oxidase subunit 6b-3-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003213Cyt_c_oxidase_su6B
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0009060 aerobic respiration
biological_process GO:0009853 photorespiration
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003780.1CmoCh19G003780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbGENE3DG3DSA:1.10.10.140coord: 67..141
score: 1.1
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 78..132
score: 2.2
IPR003213Cytochrome c oxidase, subunit VIbunknownSSF47694Cytochrome c oxidase subunit hcoord: 70..140
score: 2.35
NoneNo IPR availablePRODOMPD015172coord: 74..141
score: 6.0
NoneNo IPR availablePANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 47..141
score: 1.1
NoneNo IPR availablePANTHERPTHR11387:SF15CYTOCHROME C OXIDASE SUBUNIT 6B-1coord: 47..141
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G003780Cucsa.313570Cucumber (Gy14) v1cgycmoB0869
CmoCh19G003780CmaCh19G003760Cucurbita maxima (Rimu)cmacmoB510
CmoCh19G003780Csa3G910720Cucumber (Chinese Long) v2cmocuB508
CmoCh19G003780MELO3C003366Melon (DHL92) v3.5.1cmomeB463
CmoCh19G003780Lsi05G000440Bottle gourd (USVL1VR-Ls)cmolsiB473
CmoCh19G003780Cp4.1LG09g06650Cucurbita pepo (Zucchini)cmocpeB477
CmoCh19G003780MELO3C003366.2Melon (DHL92) v3.6.1cmomedB531
CmoCh19G003780CsaV3_3G049600Cucumber (Chinese Long) v3cmocucB0610
CmoCh19G003780Bhi05G000352Wax gourdcmowgoB0649
CmoCh19G003780CsGy3G044560Cucumber (Gy14) v2cgybcmoB359
CmoCh19G003780Carg23647Silver-seed gourdcarcmoB1380
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G003780Watermelon (97103) v2cmowmbB533
CmoCh19G003780Wax gourdcmowgoB0648
CmoCh19G003780Cucurbita moschata (Rifu)cmocmoB393
CmoCh19G003780Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G003780Cucurbita maxima (Rimu)cmacmoB509
CmoCh19G003780Cucurbita maxima (Rimu)cmacmoB511
CmoCh19G003780Cucurbita maxima (Rimu)cmacmoB512
CmoCh19G003780Cucurbita maxima (Rimu)cmacmoB604
CmoCh19G003780Wild cucumber (PI 183967)cmocpiB514
CmoCh19G003780Melon (DHL92) v3.5.1cmomeB460
CmoCh19G003780Watermelon (Charleston Gray)cmowcgB443
CmoCh19G003780Watermelon (97103) v1cmowmB474
CmoCh19G003780Watermelon (97103) v1cmowmB477
CmoCh19G003780Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G003780Cucurbita pepo (Zucchini)cmocpeB504
CmoCh19G003780Bottle gourd (USVL1VR-Ls)cmolsiB476