Cucsa.313310 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAAAGGTGAAAAAGGTGAAAAAGGCCACAGATCTAACACCACTTTCTGAAATAACGAGAAAAACCAAGTAATCCCCTTTACATACAGATCAATTTGGATGAAAACTGATAACACATCTCACGTACCAACAACCTCTCTGATTCCTTTCCAGACAACCCAAATTTTCTGTGATGAAAATATGGTTGACAACTCCCTACAAATGGCAACCGGGAAAAGGTAGATTATGGGGGAGAAGCATGGAAGAGAAGTGTAGGAAAAAGTAAGTTTTTTTATCTTTCTCCTTTCTATTCAGTTAACTTATCTGCTCTTGTATAGACAAAAAAAATATAGCTCAAAAGTAGAATACAGTAAGGTGGAGAGAAAAGGGTGTGACGCGGCTGATGAACAGCCATGAGTATTTCCCAATAGAGAGGAGCGTGTGGCATTTTGGCCCCCACACTCACGTGTACCAAATGCCTTCTTTATCACCAAAACTTTTGAAAAAATTACTAATTGATTAATTAATTAGTTAAAGCTTTTGGTGTTTGAATTGATGTCTCACCAATCCCATCATGCCTTCCATTTCTTTAACCAAAACCATAACATATTACTTATCCAATCATCCCTTTTAACTATTTGGGTTGCTTCAACCTCCTTAACTCAAAATGGATCTTACCGGGTCCTTGTGTTTTGATGGGAAGAAAATTGATTCGGTTACTGGTACTTGTTTCTTTTACATGTACCTAAAAGATGTTGAATTGTGTAGTTTTATGTTCAAGTTTGTATGTTTATTGTGCTATGTTCGAGTGAGGTGGGTTACTCATCCTAAATTATTGGATTGAGATGATATTTAACTTTCTAAATTTTAAGATTTTTTTGTATGGCATATTTAGATTCCATCTTTGGTTTTCTCTCTTACTCCTGATCTACTATCTATGGATCTTTACAACAACACGTCTAGTACTCTTCCCTCTTGCTCTCTCACTCGCCTCTACAACCCTCACCTTATCTCGATCTCCTCCCACTTTCTCCACTTTTCTCTCTTGCTTTCTAGCAAGTTCAACCCAATCAGATAACTTAGCTGCACATTTGATGGCTCTGATCCTTTATTGTTGGGGACACCATTGTAATTGGAAAAAACTGAAACCACTCCAACTAGGGAAGAGAAAGATGATTTTAGTTAATAATGATGTAAGCAATAGGACAAAATTCTCAAGTTAAAAAACAGGTGAGGCAAAATCCACTATGCACTTTCTTTTGGTGGATTCTATACTCTTTTCTCTAGTTTTCTGTAATATATATGTATGCATGTTTTGTGGTGATTTATTTGAAATTTGAACTGGGGATTAAGAGAAGGCCTTGCAAAGGAAAGAAAGAAAAGAAAGAAAAAGCTTTGTTGTAAGAAAGGCTTCAACAAACAACTATTTGATACTTATCCTTTTGCTTTTATGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCTTTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCCTCTCACTTCAACTCATTGCCTTTTCAACCTTTCTTCCCCCAGCTACTTCCTAGCTGGGTTTCTCCATTTTTTTGGTTTGTTCCATTCCATTTCTTCTCAATATCAATACACTGCATTACATTACTTTACTTTACTCTTTTTTCAGGGTCCTTCCACTTTTCAAACACCCTCATCAAAATTCCTTCATTTCTATCCAACTCTCTTCCCAACCCATGTTGCAATTCTCTATCTTTATTTGTTTTCTTCTTTTGATTCCTCTATTTTCTGTGAATTTTCTCAACAGGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGGTTGCTGAGAAAATGTATTAGTTTCCCATTTTCCAATTTTCTCATCACTGGAGCTGTAAATCCTATTGTTTGATGTTGAATATTCATAGCGTTGATTCTAAATTAGGTTTTATGAGCGATTCTTCAAGAAGAGGCTTATGTTTTTTAGAATTAGATTGGGTTTTTTTTATGTGTTTGGTTTCATTAGATCAGTGGTTTGATATTTGGTACTCAACTGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGTATATTTGTTCTTCCTCTTCCTTTTCACCATCTAGCTCGTGCCAATGCTAAATTTGAAATTTCTGTTGGAGAATTCTGTTGTTTTTTGTTTAGAAGAAAGATTGGAAGTTTTAGTAACTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTATGGAAATCTCAGTAACTTTCAAAAACTCCAATTGAAATAACGTTAGACATCCGGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAACAATTCATTCCTAGCTAACTCCCATCATGAGTAGCAACATTATGTTATTGATTGATTCACTATTCACTAAAATTAGCATATCGTTAGAAAATAGTTTAGAGCTACAAACCTTTGTTTGGTAAGGCAATACTCATGTGAATCGAGCAATAAATCCATACTGTTTCAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAGAAAAAAAAACTTCTTTTTGTTGAACTCTCTTTTTCTATACGAGCATTGTTGAACTCTCTTTGTCCATATGAACATGAACTTGGAATAAAGTCATTCGATCTAAATCATCGGGTTGTTTAAGAATTAACGAAAGCTTAGAACATTAAACATGGCTCTGATAGGACTCAAAATTCTTTAATCTATGCTTTTAAAGTTTTAACTCTATCTTTCCATTGTCATTTCTTACTTGAATATGAAGTGAAACCATACATTCTAGTATCTCACATTATCAATGTCTTTCATTGTAGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGA TGAAAAAGGTGAAAAAGGTGAAAAAGGCCACAGATCTAACACCACTTTCTGAAATAACGAGAAAAACCAAGTAATCCCCTTTACATACAGATCAATTTGGATGAAAACTGATAACACATCTCACGTACCAACAACCTCTCTGATTCCTTTCCAGACAACCCAAATTTTCTGTGATGAAAATATGGTTGACAACTCCCTACAAATGGCAACCGGGAAAAGGTAGATTATGGGGGAGAAGCATGGAAGAGAAGTGTAGGAAAAAGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGA ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAA MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSAIDQKA*
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70 Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 1
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 9.1e-69 Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 1
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL2_ORYSJ (Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 1.6e-41 Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 1
HSP 2 Score: 40.4 bits (93), Expect = 1.9e-02 Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 1
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL3_ORYSJ (Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 3.6e-41 Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 1
HSP 2 Score: 68.9 bits (167), Expect = 5.1e-11 Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.4e-37 Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 1
HSP 2 Score: 72.4 bits (176), Expect = 4.6e-12 Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A0A0LEE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902960 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 1.6e-80 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Cucsa.313310 vs. TrEMBL
Match: M5WNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013007mg PE=4 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74 Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1
BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A061G2E0_THECC (Lsd one like 1 isoform 1 OS=Theobroma cacao GN=TCM_015740 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 6.5e-74 Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1
BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A067EIT9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032227mg PE=4 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73 Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 1
BLAST of Cucsa.313310 vs. TrEMBL
Match: M1BH57_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017509 PE=4 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73 Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 1
BLAST of Cucsa.313310 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1) HSP 1 Score: 242.7 bits (618), Expect = 1.4e-64 Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 1
BLAST of Cucsa.313310 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein) HSP 1 Score: 122.1 bits (305), Expect = 2.8e-28 Identity = 67/156 (42.95%), Postives = 84/156 (53.85%), Query Frame = 1
HSP 2 Score: 88.6 bits (218), Expect = 3.5e-18 Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 1
BLAST of Cucsa.313310 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2) HSP 1 Score: 101.3 bits (251), Expect = 5.2e-22 Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1
HSP 2 Score: 59.7 bits (143), Expect = 1.7e-09 Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 1
BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|449461521|ref|XP_004148490.1| (PREDICTED: protein LOL1 [Cucumis sativus]) HSP 1 Score: 306.6 bits (784), Expect = 2.3e-80 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|659131977|ref|XP_008465951.1| (PREDICTED: protein LOL1 [Cucumis melo]) HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79 Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1
BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|697164091|ref|XP_009590862.1| (PREDICTED: protein LOL1 isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 285.8 bits (730), Expect = 4.2e-74 Identity = 131/141 (92.91%), Postives = 137/141 (97.16%), Query Frame = 1
BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|595849533|ref|XP_007209744.1| (hypothetical protein PRUPE_ppa013007mg [Prunus persica]) HSP 1 Score: 285.0 bits (728), Expect = 7.2e-74 Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1
BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|590675741|ref|XP_007039533.1| (Lsd one like 1 isoform 1 [Theobroma cacao]) HSP 1 Score: 284.6 bits (727), Expect = 9.4e-74 Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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