Cucsa.313310 (gene) Cucumber (Gy14) v1

NameCucsa.313310
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionZinc finger, LSD1-type
Locationscaffold02995 : 2472381 .. 2476011 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAAAGGTGAAAAAGGTGAAAAAGGCCACAGATCTAACACCACTTTCTGAAATAACGAGAAAAACCAAGTAATCCCCTTTACATACAGATCAATTTGGATGAAAACTGATAACACATCTCACGTACCAACAACCTCTCTGATTCCTTTCCAGACAACCCAAATTTTCTGTGATGAAAATATGGTTGACAACTCCCTACAAATGGCAACCGGGAAAAGGTAGATTATGGGGGAGAAGCATGGAAGAGAAGTGTAGGAAAAAGTAAGTTTTTTTATCTTTCTCCTTTCTATTCAGTTAACTTATCTGCTCTTGTATAGACAAAAAAAATATAGCTCAAAAGTAGAATACAGTAAGGTGGAGAGAAAAGGGTGTGACGCGGCTGATGAACAGCCATGAGTATTTCCCAATAGAGAGGAGCGTGTGGCATTTTGGCCCCCACACTCACGTGTACCAAATGCCTTCTTTATCACCAAAACTTTTGAAAAAATTACTAATTGATTAATTAATTAGTTAAAGCTTTTGGTGTTTGAATTGATGTCTCACCAATCCCATCATGCCTTCCATTTCTTTAACCAAAACCATAACATATTACTTATCCAATCATCCCTTTTAACTATTTGGGTTGCTTCAACCTCCTTAACTCAAAATGGATCTTACCGGGTCCTTGTGTTTTGATGGGAAGAAAATTGATTCGGTTACTGGTACTTGTTTCTTTTACATGTACCTAAAAGATGTTGAATTGTGTAGTTTTATGTTCAAGTTTGTATGTTTATTGTGCTATGTTCGAGTGAGGTGGGTTACTCATCCTAAATTATTGGATTGAGATGATATTTAACTTTCTAAATTTTAAGATTTTTTTGTATGGCATATTTAGATTCCATCTTTGGTTTTCTCTCTTACTCCTGATCTACTATCTATGGATCTTTACAACAACACGTCTAGTACTCTTCCCTCTTGCTCTCTCACTCGCCTCTACAACCCTCACCTTATCTCGATCTCCTCCCACTTTCTCCACTTTTCTCTCTTGCTTTCTAGCAAGTTCAACCCAATCAGATAACTTAGCTGCACATTTGATGGCTCTGATCCTTTATTGTTGGGGACACCATTGTAATTGGAAAAAACTGAAACCACTCCAACTAGGGAAGAGAAAGATGATTTTAGTTAATAATGATGTAAGCAATAGGACAAAATTCTCAAGTTAAAAAACAGGTGAGGCAAAATCCACTATGCACTTTCTTTTGGTGGATTCTATACTCTTTTCTCTAGTTTTCTGTAATATATATGTATGCATGTTTTGTGGTGATTTATTTGAAATTTGAACTGGGGATTAAGAGAAGGCCTTGCAAAGGAAAGAAAGAAAAGAAAGAAAAAGCTTTGTTGTAAGAAAGGCTTCAACAAACAACTATTTGATACTTATCCTTTTGCTTTTATGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCTTTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCCTCTCACTTCAACTCATTGCCTTTTCAACCTTTCTTCCCCCAGCTACTTCCTAGCTGGGTTTCTCCATTTTTTTGGTTTGTTCCATTCCATTTCTTCTCAATATCAATACACTGCATTACATTACTTTACTTTACTCTTTTTTCAGGGTCCTTCCACTTTTCAAACACCCTCATCAAAATTCCTTCATTTCTATCCAACTCTCTTCCCAACCCATGTTGCAATTCTCTATCTTTATTTGTTTTCTTCTTTTGATTCCTCTATTTTCTGTGAATTTTCTCAACAGGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGGTTGCTGAGAAAATGTATTAGTTTCCCATTTTCCAATTTTCTCATCACTGGAGCTGTAAATCCTATTGTTTGATGTTGAATATTCATAGCGTTGATTCTAAATTAGGTTTTATGAGCGATTCTTCAAGAAGAGGCTTATGTTTTTTAGAATTAGATTGGGTTTTTTTTATGTGTTTGGTTTCATTAGATCAGTGGTTTGATATTTGGTACTCAACTGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGTATATTTGTTCTTCCTCTTCCTTTTCACCATCTAGCTCGTGCCAATGCTAAATTTGAAATTTCTGTTGGAGAATTCTGTTGTTTTTTGTTTAGAAGAAAGATTGGAAGTTTTAGTAACTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTATGGAAATCTCAGTAACTTTCAAAAACTCCAATTGAAATAACGTTAGACATCCGGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAACAATTCATTCCTAGCTAACTCCCATCATGAGTAGCAACATTATGTTATTGATTGATTCACTATTCACTAAAATTAGCATATCGTTAGAAAATAGTTTAGAGCTACAAACCTTTGTTTGGTAAGGCAATACTCATGTGAATCGAGCAATAAATCCATACTGTTTCAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAGAAAAAAAAACTTCTTTTTGTTGAACTCTCTTTTTCTATACGAGCATTGTTGAACTCTCTTTGTCCATATGAACATGAACTTGGAATAAAGTCATTCGATCTAAATCATCGGGTTGTTTAAGAATTAACGAAAGCTTAGAACATTAAACATGGCTCTGATAGGACTCAAAATTCTTTAATCTATGCTTTTAAAGTTTTAACTCTATCTTTCCATTGTCATTTCTTACTTGAATATGAAGTGAAACCATACATTCTAGTATCTCACATTATCAATGTCTTTCATTGTAGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGA

mRNA sequence

TGAAAAAGGTGAAAAAGGTGAAAAAGGCCACAGATCTAACACCACTTTCTGAAATAACGAGAAAAACCAAGTAATCCCCTTTACATACAGATCAATTTGGATGAAAACTGATAACACATCTCACGTACCAACAACCTCTCTGATTCCTTTCCAGACAACCCAAATTTTCTGTGATGAAAATATGGTTGACAACTCCCTACAAATGGCAACCGGGAAAAGGTAGATTATGGGGGAGAAGCATGGAAGAGAAGTGTAGGAAAAAGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGA

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAA

Protein sequence

MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSAIDQKA*
BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.1e-69
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTE
Sbjct: 43  PVPLAPYPTPPVPFTPP-NGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S    DQK
Sbjct: 163 KCAVCNFVTSVGASPGT-DQK 181

BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL2_ORYSJ (Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-41
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 1

Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPP-PGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMST 138
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM+T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116


HSP 2 Score: 40.4 bits (93), Expect = 1.9e-02
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 1

Query: 25  SQLVCSGCRNLLLYPVGATSVCCAVCNAVT--------AVPPPGT 62
           + L C  C+ +L+YP GA SV CA+CN +T         +PP GT
Sbjct: 81  AHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHLPPNGT 125

BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LOL3_ORYSJ (Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-41
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 1

Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 140
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM+T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119


HSP 2 Score: 68.9 bits (167), Expect = 5.1e-11
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1

Query: 12  PPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGC 71
           PPAP  +      + L+C GCR LL+Y   A +V C+ C+ V  V P    +A + CG C
Sbjct: 36  PPAPVME-----MAHLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPVNN-IAHVSCGQC 95

Query: 72  HTLLMYIRGATSVQCSCCHTV 93
            T LMY  GA SV+C+ CH +
Sbjct: 96  RTTLMYPYGAPSVKCAICHYI 110

BLAST of Cucsa.313310 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-37
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 1

Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126


HSP 2 Score: 72.4 bits (176), Expect = 4.6e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1

Query: 10  PTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPP--------PGT 69
           P PP P+        + ++C GCR +L+Y  GA+SV C+ C     VP         P +
Sbjct: 40  PPPPPPHDM------AHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSS 99

Query: 70  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 93
           ++AQ+ CG C T LMY  GA+SV+C+ C  V
Sbjct: 100 QVAQINCGHCRTTLMYPYGASSVKCAVCQFV 124

BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A0A0LEE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.6e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1

Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

BLAST of Cucsa.313310 vs. TrEMBL
Match: M5WNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013007mg PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG+STS  +QK
Sbjct: 122 KCAVCNFVTSVGVSTSTPEQK 142

BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A061G2E0_THECC (Lsd one like 1 isoform 1 OS=Theobroma cacao GN=TCM_015740 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.5e-74
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S SA +QK
Sbjct: 122 KCAVCNFVTSVGASASATEQK 142

BLAST of Cucsa.313310 vs. TrEMBL
Match: A0A067EIT9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032227mg PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 131/141 (92.91%), Postives = 135/141 (95.74%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVT+VG STS  +QK
Sbjct: 122 KCAVCNFVTAVGASTSTTEQK 142

BLAST of Cucsa.313310 vs. TrEMBL
Match: M1BH57_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017509 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P+N TQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPTPFTPPANGTQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG+STS  +QK
Sbjct: 122 KCAVCNFVTSVGVSTSTAEQK 142

BLAST of Cucsa.313310 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 242.7 bits (618), Expect = 1.4e-64
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 1

Query: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 139
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG STS 
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTST 180

Query: 140 IDQK 144
            D K
Sbjct: 181 TDSK 184

BLAST of Cucsa.313310 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-28
Identity = 67/156 (42.95%), Postives = 84/156 (53.85%), Query Frame = 1

Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLL---------------------------- 141
           +SV+CSCC T NL  E++    +   N   +L                            
Sbjct: 62  SSVRCSCCQTTNLVPESSFT--LLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQI 121


HSP 2 Score: 88.6 bits (218), Expect = 3.5e-18
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 1

Query: 10  PTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG-TEMAQLVC 69
           P PP P+        + ++C GCR +L+Y  GA+SV C+ C     VP    T +   + 
Sbjct: 35  PPPPPPHDM------AHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNIL 94

Query: 70  GGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCN 129
               T L+   G  +      H       ++QVA ++CG+CR  LMY YGA SVKCAVC 
Sbjct: 95  KVLKTKLLDGPGGLAHSNQVAHA-----PSSQVAQINCGHCRTTLMYPYGASSVKCAVCQ 154

Query: 130 FVTSVGMSTSAI 141
           FVT+V MS   +
Sbjct: 155 FVTNVNMSNGRV 155

BLAST of Cucsa.313310 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-22
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1

Query: 39  PVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA 98
           P    ++  AV    T V  P  E AQ+VCG C  LL Y+RG+  V+CS C TVNL LEA
Sbjct: 36  PPPIVTITAAVNPNPTTVEIP--EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEA 95

Query: 99  NQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSV 134
           NQV  V+C NC++LLMY YGA +V+C+ CN VT +
Sbjct: 96  NQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDI 128


HSP 2 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 1

Query: 2   PPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61
           PP+        P P T      ++Q+VC  CR LL Y  G+  V C+ C  V  V     
Sbjct: 37  PPIVTITAAVNPNP-TTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-AN 96

Query: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQ 101
           ++ Q+ C  C  LLMY  GA +V+CS C++V    E N+
Sbjct: 97  QVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNK 133

BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|449461521|ref|XP_004148490.1| (PREDICTED: protein LOL1 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1

Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|659131977|ref|XP_008465951.1| (PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1

Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|697164091|ref|XP_009590862.1| (PREDICTED: protein LOL1 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 285.8 bits (730), Expect = 4.2e-74
Identity = 131/141 (92.91%), Postives = 137/141 (97.16%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P+N TQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPTPFTPPANGTQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG+STS I+QK
Sbjct: 122 KCAVCNFVTSVGVSTSTIEQK 142

BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|595849533|ref|XP_007209744.1| (hypothetical protein PRUPE_ppa013007mg [Prunus persica])

HSP 1 Score: 285.0 bits (728), Expect = 7.2e-74
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG+STS  +QK
Sbjct: 122 KCAVCNFVTSVGVSTSTPEQK 142

BLAST of Cucsa.313310 vs. NCBI nr
Match: gi|590675741|ref|XP_007039533.1| (Lsd one like 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 284.6 bits (727), Expect = 9.4e-74
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1

Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S SA +QK
Sbjct: 122 KCAVCNFVTSVGASASATEQK 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LOL1_ARATH1.7e-7086.00Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1[more]
LSD1_ORYSJ9.1e-6987.23Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1[more]
LOL2_ORYSJ1.6e-4164.35Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1[more]
LOL3_ORYSJ3.6e-4163.56Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1[more]
LSD1_ARATH2.4e-3757.81Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LEE4_CUCSA1.6e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902960 PE=4 SV=1[more]
M5WNS8_PRUPE5.0e-7493.62Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013007mg PE=4 SV=1[more]
A0A061G2E0_THECC6.5e-7493.62Lsd one like 1 isoform 1 OS=Theobroma cacao GN=TCM_015740 PE=4 SV=1[more]
A0A067EIT9_CITSI1.1e-7392.91Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032227mg PE=4 SV=1[more]
M1BH57_SOLTU1.1e-7392.20Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017509 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32540.11.4e-6491.94 lsd one like 1[more]
AT4G20380.82.8e-2842.95 LSD1 zinc finger family protein[more]
AT4G21610.15.2e-2251.58 lsd one like 2[more]
Match NameE-valueIdentityDescription
gi|449461521|ref|XP_004148490.1|2.3e-80100.00PREDICTED: protein LOL1 [Cucumis sativus][more]
gi|659131977|ref|XP_008465951.1|1.9e-7999.31PREDICTED: protein LOL1 [Cucumis melo][more]
gi|697164091|ref|XP_009590862.1|4.2e-7492.91PREDICTED: protein LOL1 isoform X1 [Nicotiana tomentosiformis][more]
gi|595849533|ref|XP_007209744.1|7.2e-7493.62hypothetical protein PRUPE_ppa013007mg [Prunus persica][more]
gi|590675741|ref|XP_007039533.1|9.4e-7493.62Lsd one like 1 isoform 1 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005735Znf_LSD1
IPR011031Multihaem_cyt
IPR005735Znf_LSD1
IPR011031Multihaem_cyt
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.313310.2Cucsa.313310.2mRNA
Cucsa.313310.1Cucsa.313310.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 29..53
score: 1.4E-10coord: 106..130
score: 1.0E-12coord: 68..92
score: 1.3
IPR005735Zinc finger, LSD1-typeTIGRFAMsTIGR01053TIGR01053coord: 65..94
score: 8.6E-15coord: 26..56
score: 9.7E-13coord: 103..133
score: 1.8
IPR011031Multihaem cytochromeunknownSSF48695Multiheme cytochromescoord: 29..127
score: 6.8
NoneNo IPR availableGENE3DG3DSA:3.90.10.10coord: 20..127
score: 5.
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 3..137
score: 2.1
NoneNo IPR availablePANTHERPTHR31747:SF1PROTEIN LOL1coord: 3..137
score: 2.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.313310Cucsa.321740Cucumber (Gy14) v1cgycgyB146