CmaCh19G004610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Zinc finger protein LSD1
Location	Cma_Chr19 : 5529264 .. 5531343 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATTAACCCATTTCTCAATAATAATACCCCCTTTCATCTTCTTCTTACCATCCACCCGGCTGCCTCTCCACCGCTTAACGACCCTCGATTCAATCCATAAATCAGTGCTCATAAGTGGGGTTGATCGGCGGAACAGCCCCTCCTCTTCAACCTCCCCAAACCCCCCCGCAGCTATGTGGATTCAGAGCAGCCATTGGAAACAACTGTGGAATACAAAAAGAATCGATAATGACAGGTTAAACTGGCATCTCATTCTTGCTTGGTTACTTTGTCAAATCTCTCAAGTTTTTTACATAAACCCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCTCACTCTATCCTCTGCAAGTTGCAACTCTATGAATCTGCCCCACTTCTTCCATTGCCTTTTCAAGCTTTCTTGTTGGGTTTCTCTTTATTTGGTTTGTTCCATATCTTCTTCAATAATCATACATTATAGTTCTTTACTCTGTTTTGTGGGTTTTGCTTCATTTCAATCCAAATTTCTGCCCAACCCTTGATGTAATTTTGTTTCTAATCTGTTCTTGTTTAAGGGTTTTCTGTGAATTTGTTCATCAGGCTCCTGTCTAGAAATCTTGTTTCCATGGGAGAGTAGCTGGTATTGTTTGTTGCTGAGGCAGTGAGGTTCTAAAGAGAGAAATAGGGAAGATTTTCCTCTATCAAGCTCCAAAATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCAGCACAACCTTATTCACAGCCTGCTAATGGTATTCACTCTGTTTTAAAGCTTTACATTATTGTTTGGTTGCCGAGGAATTGATTTAGTTTGTGTGAGATCCAATATCAGTTGGGGATGAGAACAGAGCACCCTTTATAAGACTTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCTTTTTAGAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACCATATCTGTTAACGGTGGGCTTGGGTGGTTACAGTTGGCCATTTTTCAACTTTCCAAGTGGGAAATCTATTGATTTTCCCATTCAATGGACCTCAGCCCCACTGTTTGAGGTAGCATATCCAGAGCCAAATTGGTTATGAGAAACCCTGCAAGAATGGCTCAAGTTTTCAGGCTTATTTTGGATTTTCTATGTGTTTGTGTGTGCTTTCTGTGATCAGTGTTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTTTGCTCAGGATGTAGAAACCTTTTACTCTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGTATATCTGTTCTTCCTCTTCTTTTTCACCATCTACAAGAAATATTGGAAGTTTTAGTTGCTTTATGCTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGGTATGTAAATCTAACTAGTTTAGAGAGTGATTCTACAAATCTTGGTAAATTTCTTTGGCTGCCTAGAACATCTCCTTCCTAGCTAGCTCCCATCATGAATATCAGCATTCTCTGTTCCCTAAGAACATATATTCGAATCCGCTCTTCGATGATTGTTTGGGGATGCAAACCTTGGTGTTTTAAGGCACGACTCCTGTGCATTAAGCGTCGAATGTATACCGTTACAGCGAATCAGGTGGCACACGTTAGCTGTGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTGTAAGTATAAACTTTCATTCTATTGAATTCGTGTTAGTTTCATCAGTTTAAGCATCATCTGAAAGCTCAGAACACCAACAGAGCTCTGATAGTTCTATATTTCCATCGTCGTTTCTTACTTGAATCTGAAGAGAATCCGTCCATTCTAGTAGTACCTCACACTATTAATGTCTTTCGTTGTAGATGACAACAAGTGCGATCGATCAAAAAGCTTAA

mRNA sequence

AAAAATTAACCCATTTCTCAATAATAATACCCCCTTTCATCTTCTTCTTACCATCCACCCGGCTGCCTCTCCACCGCTTAACGACCCTCGATTCAATCCATAAATCAGTGCTCATAAGTGGGGTTGATCGGCGGAACAGCCCCTCCTCTTCAACCTCCCCAAACCCCCCCGCAGCTATGTGGATTCAGAGCAGCCATTGGAAACAACTGTGGAATACAAAAAGAATCGATAATGACAGGCTCCTGTCTAGAAATCTTGTTTCCATGGGAGAGTAGCTGGTATTGTTTGTTGCTGAGGCAGTGAGGTTCTAAAGAGAGAAATAGGGAAGATTTTCCTCTATCAAGCTCCAAAATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCAGCACAACCTTATTCACAGCCTGCTAATGCCACACAGAGCCAGCTTGTTTGCTCAGGATGTAGAAACCTTTTACTCTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCACACGTTAGCTGTGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA

Coding sequence (CDS)

ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCAGCACAACCTTATTCACAGCCTGCTAATGCCACACAGAGCCAGCTTGTTTGCTCAGGATGTAGAAACCTTTTACTCTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCACACGTTAGCTGTGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA

Protein sequence

MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQKA

Homology

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BLAST of CmaCh19G004610 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.7e-65
Identity = 126/150 (84.00%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQ-----PANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPA   +      PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSIGMTTSAIDQK 145
           MYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

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BLAST of CmaCh19G004610 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-62
Identity = 120/142 (84.51%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPP  P++ P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGT
Sbjct: 43  PVPLAPYPTPPV-PFTPP-NGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGT 102

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 103 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 162

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G  +   DQK
Sbjct: 163 VKCAVCNFVTSVG-ASPGTDQK 181

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BLAST of CmaCh19G004610 vs. Swiss-Prot
Match: LOL2_ORYSJ (Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-39
Identity = 74/115 (64.35%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPP-PGTEMAQLVCGGCHTLLMYIRGAT 84
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 85  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTT 139
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116

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BLAST of CmaCh19G004610 vs. Swiss-Prot
Match: LOL3_ORYSJ (Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.8e-39
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 84
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 85  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSA 141
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119

[Close]

BLAST of CmaCh19G004610 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-34
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 84
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 85  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 142
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

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BLAST of CmaCh19G004610 vs. TrEMBL
Match: A0A0A0LEE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 146
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 144

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BLAST of CmaCh19G004610 vs. TrEMBL
Match: M5WNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013007mg PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-68
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPPA PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPA-PYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G++TS  +QK
Sbjct: 122 VKCAVCNFVTSVGVSTSTPEQK 142

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BLAST of CmaCh19G004610 vs. TrEMBL
Match: A0A061G2E0_THECC (Lsd one like 1 isoform 1 OS=Theobroma cacao GN=TCM_015740 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.1e-68
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPPA PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPA-PYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G + SA +QK
Sbjct: 122 VKCAVCNFVTSVGASASATEQK 142

[Close]

BLAST of CmaCh19G004610 vs. TrEMBL
Match: M1BH57_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017509 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.0e-68
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPP  P++ PAN TQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPT-PFTPPANGTQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G++TS  +QK
Sbjct: 122 VKCAVCNFVTSVGVSTSTAEQK 142

[Close]

BLAST of CmaCh19G004610 vs. TrEMBL
Match: V4TED2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032940mg PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.0e-68
Identity = 129/142 (90.85%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPPA PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPA-PYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVT++G +TS  +QK
Sbjct: 122 VKCAVCNFVTAVGASTSTTEQK 142

[Close]

BLAST of CmaCh19G004610 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 233.4 bits (594), Expect = 8.7e-62
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1


Query: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 84
           QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 85  VQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQK 144
           VQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDSK 184

[Close]

BLAST of CmaCh19G004610 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 65/156 (41.67%), Postives = 84/156 (53.85%), Query Frame = 1


Query: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 84
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 85  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLL---------------------------- 142
           +SV+CSCC T NL  E++    +   N   +L                            
Sbjct: 62  SSVRCSCCQTTNLVPESSFT--LLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQI 121

[Close]

BLAST of CmaCh19G004610 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2)

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-20
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 40  PVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA 99
           P    ++  AV    T V  P  E AQ+VCG C  LL Y+RG+  V+CS C TVNL LEA
Sbjct: 36  PPPIVTITAAVNPNPTTVEIP--EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEA 95

Query: 100 NQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSI 135
           NQV  V+C NC++LLMY YGA +V+C+ CN VT I
Sbjct: 96  NQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDI 128

[Close]

BLAST of CmaCh19G004610 vs. NCBI nr
Match: gi|449461521|ref|XP_004148490.1| (PREDICTED: protein LOL1 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 146
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CmaCh19G004610 vs. NCBI nr
Match: gi|659131977|ref|XP_008465951.1| (PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-72
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP P
Sbjct: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 146
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CmaCh19G004610 vs. NCBI nr
Match: gi|697164091|ref|XP_009590862.1| (PREDICTED: protein LOL1 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 266.5 bits (680), Expect = 2.6e-68
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPP  P++ PAN TQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPT-PFTPPANGTQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G++TS I+QK
Sbjct: 122 VKCAVCNFVTSVGVSTSTIEQK 142

[Close]

BLAST of CmaCh19G004610 vs. NCBI nr
Match: gi|595849533|ref|XP_007209744.1| (hypothetical protein PRUPE_ppa013007mg [Prunus persica])

HSP 1 Score: 265.8 bits (678), Expect = 4.5e-68
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPPA PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPA-PYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G++TS  +QK
Sbjct: 122 VKCAVCNFVTSVGVSTSTPEQK 142

[Close]

BLAST of CmaCh19G004610 vs. NCBI nr
Match: gi|590675741|ref|XP_007039533.1| (Lsd one like 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 265.4 bits (677), Expect = 5.9e-68
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 3   PVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 62
           PVPLAPYPTPPA PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT
Sbjct: 2   PVPLAPYPTPPA-PYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 61

Query: 63  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 122
           EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARS
Sbjct: 62  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 121

Query: 123 VKCAVCNFVTSIGMTTSAIDQK 145
           VKCAVCNFVTS+G + SA +QK
Sbjct: 122 VKCAVCNFVTSVGASASATEQK 142

The following BLAST results are available for this feature:

BLAST of CmaCh19G004610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LOL1_ARATH	4.7e-65	84.00	Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1	[more]
LSD1_ORYSJ	1.3e-62	84.51	Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1	[more]
LOL2_ORYSJ	3.4e-39	64.35	Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1	[more]
LOL3_ORYSJ	9.8e-39	63.56	Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1	[more]
LSD1_ARATH	1.1e-34	56.25	Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1	[more]

BLAST of CmaCh19G004610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEE4_CUCSA	1.1e-73	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902960 PE=4 SV=1	[more]
M5WNS8_PRUPE	3.1e-68	91.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013007mg PE=4 SV=1	[more]
A0A061G2E0_THECC	4.1e-68	91.55	Lsd one like 1 isoform 1 OS=Theobroma cacao GN=TCM_015740 PE=4 SV=1	[more]
M1BH57_SOLTU	7.0e-68	90.14	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017509 PE=4 SV=1	[more]
V4TED2_9ROSI	7.0e-68	90.85	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032940mg PE=4 SV=1	[more]

BLAST of CmaCh19G004610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32540.1	8.7e-62	92.50	lsd one like 1	[more]
AT4G20380.8	1.3e-25	41.67	LSD1 zinc finger family protein	[more]
AT4G21610.1	3.7e-20	52.63	lsd one like 2	[more]

BLAST of CmaCh19G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461521\|ref\|XP_004148490.1\|	1.6e-73	96.55	PREDICTED: protein LOL1 [Cucumis sativus]	[more]
gi\|659131977\|ref\|XP_008465951.1\|	1.4e-72	95.86	PREDICTED: protein LOL1 [Cucumis melo]	[more]
gi\|697164091\|ref\|XP_009590862.1\|	2.6e-68	90.85	PREDICTED: protein LOL1 isoform X1 [Nicotiana tomentosiformis]	[more]
gi\|595849533\|ref\|XP_007209744.1\|	4.5e-68	91.55	hypothetical protein PRUPE_ppa013007mg [Prunus persica]	[more]
gi\|590675741\|ref\|XP_007039533.1\|	5.9e-68	91.55	Lsd one like 1 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005735	Znf_LSD1
IPR011031	Multihaem_cyt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0045595	regulation of cell differentiation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004725	protein tyrosine phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004610.1	CmaCh19G004610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 30..54 score: 1.4E-10coord: 69..93 score: 1.3E-12coord: 107..131 score: 1.0
IPR005735	Zinc finger, LSD1-type	TIGRFAMs	TIGR01053	TIGR01053	coord: 104..133 score: 1.7E-11coord: 66..95 score: 8.7E-15coord: 27..57 score: 9.8
IPR011031	Multihaem cytochrome	unknown	SSF48695	Multiheme cytochromes	coord: 30..128 score: 3.7
None	No IPR available	GENE3D	G3DSA:3.90.10.10		coord: 19..128 score: 3.
None	No IPR available	PANTHER	PTHR31747	FAMILY NOT NAMED	coord: 3..138 score: 4.1
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..138 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G004610	Cucsa.313310	Cucumber (Gy14) v1	cgycmaB0869
CmaCh19G004610	Cla016175	Watermelon (97103) v1	cmawmB476
CmaCh19G004610	Csa3G902960	Cucumber (Chinese Long) v2	cmacuB516
CmaCh19G004610	MELO3C003394	Melon (DHL92) v3.5.1	cmameB468
CmaCh19G004610	ClCG09G012100	Watermelon (Charleston Gray)	cmawcgB445
CmaCh19G004610	CSPI03G46880	Wild cucumber (PI 183967)	cmacpiB523
CmaCh19G004610	CmoCh02G016470	Cucurbita moschata (Rifu)	cmacmoB520
CmaCh19G004610	CmoCh19G004760	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G004610	Lsi05G011590	Bottle gourd (USVL1VR-Ls)	cmalsiB492
CmaCh19G004610	Cp4.1LG15g03500	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G004610	MELO3C003394.2	Melon (DHL92) v3.6.1	cmamedB543
CmaCh19G004610	CsaV3_3G001860	Cucumber (Chinese Long) v3	cmacucB0626
CmaCh19G004610	CsaV3_3G049320	Cucumber (Chinese Long) v3	cmacucB0622
CmaCh19G004610	Cla97C09G174980	Watermelon (97103) v2	cmawmbB553
CmaCh19G004610	Bhi05G000366	Wax gourd	cmawgoB0648
CmaCh19G004610	CsGy3G001690	Cucumber (Gy14) v2	cgybcmaB387
CmaCh19G004610	CsGy3G044280	Cucumber (Gy14) v2	cgybcmaB382
CmaCh19G004610	Carg08828	Silver-seed gourd	carcmaB1081
CmaCh19G004610	Carg22828	Silver-seed gourd	carcmaB0401

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G004610	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh19G004610	Cucurbita maxima (Rimu)	cmacmaB449
CmaCh19G004610	Cucurbita pepo (Zucchini)	cmacpeB551