Cucsa.303110 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.303110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPolynucleotidyl transferase isoform 1
Locationscaffold02951 : 1081476 .. 1084414 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGGTATTTTGTTCATGATGGGATTTTGTGTGAGGGATTGGGAGTAATGGGGCTGAAGCTGAAGTTAACCAAACTTGACCAGTGTTAGTTGTTGTCGATTGTTGCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGGTGAGGCCTTTTACTTTGGTTCTTTTTACTTTGTCGTTCCTATTAAGATTTGTGGAATGTAATTTGATGCAATGCTGAGTGATAACAATGATTGAAGGTTGGTGCCACAAAATCTTGTCGGGAGAACTTTAATTTACTTGAGATATTATTTTCTCTTTCTTTTATCTTTTTCCGTCGTGTGAAGATTTGTTCAAGGTTATTTGATGCTATGCTGAATGATAAACGATGACTGGTTGTGCCACAAAAATCTATAGGGAGTATTTTTTTTAAAAAATCTATTTCCTAGGAAGATTTGTAGAACGATATTTGATGAAATGCTGAATGATAGACAATGATTGAAGGTTGAACAAAATTTTGCAGGGAGAACTTTAATTTTCTTGAGATTTTCTTCTCTCTTTATATCTATCTATCTATCTCTACACACACGCAATCTTTTTCCTTCCTATGAAGATTGGTAGAATGTTGTTTTATGCAATCCTAAATGATAAACAATGATTGAAGGGTGGTGCACACAAATTTTCAGGGAGAATTTTTTCGGTGAGTACCACTTTAGGTGTTGAAATGGGATTTATTAATGATGACACCAGGATTACTTTGTAGTTGCATAGCTTTAACTTTACCTTTTTCCTTACCTCATTTCCTGAGATGTGTTGTTGCGCAACGTATTTGCCTTTAAACTTCAATATATGATAGTGAATTGTTAATGTTGTTCTTTCTTGCAACATTCAGTCATCTCCATCCTGTTTGTATTTACAGTTGTTTCTGATTTGTGTATTCAGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGTGCGTTCTTTATCTCTTCAGAGACATCATTATTGACTCTTATCTGTACTTGACCTTATATTGTTCTGAGTACAGGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTATTGCATCTAGTTTAGCAAGCCCTTCCGGTTCGTCTTGTGACATGTGGCATGCCTTTCAATGTCTCGGTCCATGTCTCCGTTGAATTCACAAACTTGGTCAAATGAGTGTGATTATGTTTTGAATTGTCTTTCACCTGATAAAATTTTCTTTTACGTGGTGCTGACTTATGCATAGGCTACTGCTACATTGAATTTCATCAACAATGAATTTTATATTTGTGATTTACTGATTTCTTTTATCTATACACAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGTAATTTAGAATTCTCTCTCTCTTTTGCTTAAACTTTCATCTTGATAAGGTTGGCAGCTGAAATGATTATCCAATTTTCTCAATGTAAGAATAATATCTTAAAATATCAATAGAAGCTTCAGTGTATTAACAATAAGGTGTGTATGTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAGAGTAAGGTGGACTATATGGGATCAGGTACTTGTTTGTCAACGGAGTTGCTTTCTTTGCAAATTGAAATTTCAAAATTTTGAATTAAAAAATGTCCTTTTGTTCATAAATGTTTACCGTGACTAGAAAATTGGGTTTTCAAATTTAGTTTCTAATGTAAATTTTAGACCATTTAGAAACTAATTTCATATTTCATGGACTAGTCAGAAACTGCATTTGTACTGGATCCAACATGTCATTTTTGGATTTCTAAGGACTAAATAGAACTAAAAGTATTAGTTTTGAAATTCATATACCAAATAAAAATTAAGGGGTTGTTTGGACCCTCAACTTTGAGTGGGTGGAGTGGTGTATTATAATACACTCCATGTTTGGGTCTCGAATAACAATAGAGTGGTTCTTTTTAACTAACCTTAAAATAATTTACACTCTAAATATAAAGTATTATAAAGTATCGACTAATAACTAACTCAACGTTTCAAATGTTTTAAGTTTAAGTATCACCCATGAAGGTTTTATTTTATTACCTAGGTCGGTGATATTTGTGATTTCTAAAGGACAGTTTGTGTTAAACTTTGCCTTCAAATTTTAGGCTTCCTTGTATTGTTCCCACCCTTTGATAATAATTTGATACATTATACATTGATCATTATATGCAGACATTTGATTCTCCCTTCTTAGTAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTGACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAACCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCTTGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTC

mRNA sequence

AAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAGAGTAAGGTGGACTATATGGGATCAGACATTTGATTCTCCCTTCTTAGTAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTGACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAACCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCTTGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTC

Coding sequence (CDS)

ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG

Protein sequence

MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET*
Homology
[Close]
BLAST of Cucsa.303110 vs. Swiss-Prot
Match: YQGF_CALS8 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 1 

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDF----QKMISEFSLAGF 82
           R+L LD+G + +G+A+SDP    A P  VL       DL  +D      K+ +E  +   
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 61

Query: 83  IVGYPFDRLRNNPDAMQVKIF-IDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLNLL 142
           ++GYP  +   +PD    K+  ID++C +  +   V    WDE F++K VE +++  N+ 
Sbjct: 62  VIGYPVSKF--HPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVS 121

Query: 143 PAVSKTIIDKFAAVGILQGYLDYFN 162
               K ++DK AAV ILQGYLD+ N
Sbjct: 122 WQKRKKVVDKLAAVYILQGYLDFIN 137

[Close]
BLAST of Cucsa.303110 vs. Swiss-Prot
Match: YQGF_RHOCS (Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=RC1_1518 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 21  HGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIV 80
           +GRL+GLD+G+K +GLAVSDP   +A P+  + R K T D  AQ+  + + +  +   +V
Sbjct: 16  NGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDRDVRALVV 75

Query: 81  GYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGV--KYTFWDECFTSKNVELLIKPLNLLP 140
           G P +      P    V+ F   L +  +L G   +  FWDE  ++  VE ++   ++  
Sbjct: 76  GLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVERMMIGWDMTR 135

Query: 141 AVSKTIIDKFAAVGILQGYLD 159
                ++DK AA  ILQG LD
Sbjct: 136 KRRDEVVDKMAAAYILQGALD 154

[Close]
BLAST of Cucsa.303110 vs. Swiss-Prot
Match: YQGF_CARHZ (Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=CHY_0542 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 1 

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGY 82
           ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  ++ +K+I    +   ++GY
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDL--EEIKKIIDLHHVTEVVIGY 61

Query: 83  PFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSK 142
           P +      P A  VK F  +L K     G+K  FWDE  ++   E L+   ++     K
Sbjct: 62  PRNMNGTAGPRAELVKRFARELYK---FTGIKPVFWDERLSTVEAEKLLISGDISRRKRK 121

Query: 143 TIIDKFAAVGILQGYLDY 160
            +IDK AA  IL GYL+Y
Sbjct: 122 KVIDKLAATLILSGYLNY 134

[Close]
BLAST of Cucsa.303110 vs. Swiss-Prot
Match: YQGF_NITHX (Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_2279 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1 

Query: 20  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFI 79
           E G L+GLD+G K +G+AVSDPD ++A  +  L RK  T D  A     +  E + AGF+
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 76

Query: 80  VGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPA 139
           +G P +      P A   + F  +L    +L  +    WDE  ++  VE  +  +++  A
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNL---ARLTDLAIGLWDERLSTVAVERELIGMDMSRA 136

Query: 140 VSKTIIDKFAAVGILQGYLD 159
               +ID+ AA+ ILQG LD
Sbjct: 137 KRAKVIDEHAAIFILQGALD 151

[Close]
BLAST of Cucsa.303110 vs. Swiss-Prot
Match: YQGF_SYNWW (Putative pre-16S rRNA nuclease OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN=Swol_0470 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1 

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGY 82
           R++GLD+G+K +G+A SDP    A   S+L RK    DL     Q++  EF +   ++G 
Sbjct: 2   RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSY--LQELCQEFQVEKIVLGL 61

Query: 83  PFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSK 142
           P +      P A++ + F   L +  K   +   FWDE  +SK+ E ++   +L     K
Sbjct: 62  PLNMNGTMGPKALETQEFARALQEALK---IPVDFWDERLSSKSAERVLLEADLSRKRRK 121

Query: 143 TIIDKFAAVGILQGYLD 159
            +IDK AAV ILQ YLD
Sbjct: 122 ELIDKIAAVHILQAYLD 133

[Close]
BLAST of Cucsa.303110 vs. TrEMBL
Match: A0A0A0KMK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-91
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

[Close]
BLAST of Cucsa.303110 vs. TrEMBL
Match: D7TW01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03570 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.5e-65
Identity = 125/162 (77.16%), Postives = 141/162 (87.04%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P+ LF DL K  A E GRLLGLDVGDKYVGLAVSD  NKIA PLSVLLRKK+ +D
Sbjct: 56  MKYVKPVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNID 115

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ +IS+ SLAGFIVGYPF+R R++P A+ VK+FIDDLCKTGKLEGV+YT+WDEC
Sbjct: 116 LMATDFQSLISDLSLAGFIVGYPFNRQRSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDEC 175

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR 163
           FTSKNVELL+KPLNL P  SKTI+DKFAAVGILQGYLD+ NR
Sbjct: 176 FTSKNVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNR 217

[Close]
BLAST of Cucsa.303110 vs. TrEMBL
Match: B9GKI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09310g PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.5e-65
Identity = 123/166 (74.10%), Postives = 143/166 (86.14%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LF +L K  A+  GR LGLDVGDKYVGLAVSDP NKIA PLSVLLRKK+ ++
Sbjct: 1   MKYVRPLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIE 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ +ISE SL GFIVGYPFDR R  PDA++VK+F+DDLCKTGKLEGVK+T+WDEC
Sbjct: 61  LMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 167
           FTSKNVELL+KPL+L P  +K+I+DKFAAVGILQGYLDY N++ +L
Sbjct: 121 FTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVNKKMKL 166

[Close]
BLAST of Cucsa.303110 vs. TrEMBL
Match: A0A067JRJ0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20599 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-64
Identity = 125/169 (73.96%), Postives = 142/169 (84.02%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL LF +L K  A    RLLGLDVG KYVGLA+SD  N+IA PLSVLLRKK+ +D
Sbjct: 1   MKYVKPLALFHELMKAKAQGERRLLGLDVGGKYVGLAISDQCNEIASPLSVLLRKKSNID 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ + SE SLAGF+VGYPFDRLR+ PDA+QVK+FIDDLCKTGKLEG+KYT+WDEC
Sbjct: 61  LMADDFQSLTSELSLAGFVVGYPFDRLRSAPDAVQVKVFIDDLCKTGKLEGLKYTYWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVELLIKPL L P  +KT+IDKFAAVGILQGYLDY NR  ++ ET
Sbjct: 121 FTSKNVELLIKPLALCPTQAKTMIDKFAAVGILQGYLDYVNRETKMEET 169

[Close]
BLAST of Cucsa.303110 vs. TrEMBL
Match: A0A0J8C2Z4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-64
Identity = 122/162 (75.31%), Postives = 143/162 (88.27%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MK+++PL LF+DL K +ALE GRLLGLDVGDKYVGLA+SDP+NKIA PLSVLLRKK  +D
Sbjct: 163 MKHMKPLSLFQDLLKTNALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNID 222

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           +MA DF  +ISEFSL+GFIVG P+DRLR +P A+QVK+F+DDLCKTGKLEGVKYT+W+EC
Sbjct: 223 MMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNEC 282

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR 163
           FTSKNVELL+KPL L P   KT++DKFAAVGILQGYLDY NR
Sbjct: 283 FTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQGYLDYVNR 324

[Close]
BLAST of Cucsa.303110 vs. TAIR10
Match: AT3G52905.1 (AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL L  +  K      GR LGLDVGDKYVGLA+SDP N +A PLSVLLRKK+ +D
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ ++  FS++G +VGYPF +L N  D + V +FI++L KT KL+ VKYT+WDE 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR 163
            +SK VEL++KPLNL P   KT++DK AAV ILQ YLDY NR
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

[Close]
BLAST of Cucsa.303110 vs. NCBI nr
Match: gi|449452328|ref|XP_004143911.1| (PREDICTED: uncharacterized protein LOC101219574 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 4.4e-91
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

[Close]
BLAST of Cucsa.303110 vs. NCBI nr
Match: gi|659073795|ref|XP_008437257.1| (PREDICTED: uncharacterized protein LOC103482742 isoform X1 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

[Close]
BLAST of Cucsa.303110 vs. NCBI nr
Match: gi|659073797|ref|XP_008437258.1| (PREDICTED: uncharacterized protein LOC103482742 isoform X2 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 134/154 (87.01%), Postives = 144/154 (93.51%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQ 155
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQ
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ 154

[Close]
BLAST of Cucsa.303110 vs. NCBI nr
Match: gi|743852442|ref|XP_011029263.1| (PREDICTED: uncharacterized protein LOC105129048 isoform X2 [Populus euphratica])

HSP 1 Score: 256.1 bits (653), Expect = 4.2e-65
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LF +L K  A+  GR LGLDVGDKYVGLAVSDP NKIA PLSVLLRKK+ ++
Sbjct: 1   MKYVRPLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIE 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ +ISE SL GFIVGYPFDR R  PDA++VK+F+DDLCKTGKLEGVK+T+WDEC
Sbjct: 61  LMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 167
           FTSKNVELL+KPL+L P  +K+I+DKFAAVGILQGYLDY NR+ +L
Sbjct: 121 FTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVNRKMKL 166

[Close]
BLAST of Cucsa.303110 vs. NCBI nr
Match: gi|224053911|ref|XP_002298037.1| (hypothetical protein POPTR_0001s09310g [Populus trichocarpa])

HSP 1 Score: 255.0 bits (650), Expect = 9.3e-65
Identity = 123/166 (74.10%), Postives = 143/166 (86.14%), Query Frame = 1 

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LF +L K  A+  GR LGLDVGDKYVGLAVSDP NKIA PLSVLLRKK+ ++
Sbjct: 1   MKYVRPLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIE 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ +ISE SL GFIVGYPFDR R  PDA++VK+F+DDLCKTGKLEGVK+T+WDEC
Sbjct: 61  LMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 167
           FTSKNVELL+KPL+L P  +K+I+DKFAAVGILQGYLDY N++ +L
Sbjct: 121 FTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVNKKMKL 166

The following BLAST results are available for this feature:
BLAST of Cucsa.303110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YQGF_CALS81.3e-1335.17Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A... [more]
YQGF_RHOCS1.4e-1234.04Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / S... [more]
YQGF_CARHZ2.4e-1236.23Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC... [more]
YQGF_NITHX2.4e-1235.00Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain X14 / DSM 102... [more]
YQGF_SYNWW4.1e-1235.77Putative pre-16S rRNA nuclease OS=Syntrophomonas wolfei subsp. wolfei (strain DS... [more]
BLAST of Cucsa.303110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMK7_CUCSA3.1e-91100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153680 PE=3 SV=1[more]
D7TW01_VITVI6.5e-6577.16Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03570 PE=3 SV=... [more]
B9GKI3_POPTR6.5e-6574.10Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09310g PE=3 SV=1[more]
A0A067JRJ0_JATCU1.4e-6473.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20599 PE=3 SV=1[more]
A0A0J8C2Z4_BETVU1.4e-6475.31Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 S... [more]
BLAST of Cucsa.303110 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52905.11.1e-5059.88 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of Cucsa.303110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452328|ref|XP_004143911.1|4.4e-91100.00PREDICTED: uncharacterized protein LOC101219574 [Cucumis sativus][more]
gi|659073795|ref|XP_008437257.1|1.5e-7887.57PREDICTED: uncharacterized protein LOC103482742 isoform X1 [Cucumis melo][more]
gi|659073797|ref|XP_008437258.1|1.6e-6987.01PREDICTED: uncharacterized protein LOC103482742 isoform X2 [Cucumis melo][more]
gi|743852442|ref|XP_011029263.1|4.2e-6574.70PREDICTED: uncharacterized protein LOC105129048 isoform X2 [Populus euphratica][more]
gi|224053911|ref|XP_002298037.1|9.3e-6574.10hypothetical protein POPTR_0001s09310g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006364 rRNA processing
biological_process GO:0031564 transcription antitermination
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.303110.3Cucsa.303110.3mRNA
Cucsa.303110.2Cucsa.303110.2mRNA
Cucsa.303110.1Cucsa.303110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 22..161
score: 16
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 23..158
score: 1.3
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMsTIGR00250TIGR00250coord: 25..158
score: 1.7
IPR006641YqgF/RNase H-like domainGENE3DG3DSA:3.30.420.140coord: 22..161
score: 3.4
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 22..126
score: 6.8
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 22..161
score: 2.28
NoneNo IPR availablePANTHERPTHR33317FAMILY NOT NAMEDcoord: 1..163
score: 2.5
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEINcoord: 1..163
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.303110Cla011454Watermelon (97103) v1cgywmB552
Cucsa.303110Csa5G153680Cucumber (Chinese Long) v2cgycuB434
Cucsa.303110MELO3C005669Melon (DHL92) v3.5.1cgymeB495
Cucsa.303110ClCG01G002790Watermelon (Charleston Gray)cgywcgB520
Cucsa.303110CSPI05G05490Wild cucumber (PI 183967)cgycpiB457
Cucsa.303110CmaCh15G012220Cucurbita maxima (Rimu)cgycmaB0830
Cucsa.303110CmaCh02G014580Cucurbita maxima (Rimu)cgycmaB0837
Cucsa.303110CmoCh02G014930Cucurbita moschata (Rifu)cgycmoB0832
Cucsa.303110Lsi09G002640Bottle gourd (USVL1VR-Ls)cgylsiB487
Cucsa.303110Cp4.1LG05g03400Cucurbita pepo (Zucchini)cgycpeB0792
Cucsa.303110MELO3C005669.2Melon (DHL92) v3.6.1cgymedB494
Cucsa.303110CsaV3_5G002870Cucumber (Chinese Long) v3cgycucB470
Cucsa.303110Cla97C01G002860Watermelon (97103) v2cgywmbB520
Cucsa.303110Bhi12G000240Wax gourdcgywgoB602
Cucsa.303110Carg02524Silver-seed gourdcarcgyB1043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.303110Cucurbita pepo (Zucchini)cgycpeB0789
Cucsa.303110Bottle gourd (USVL1VR-Ls)cgylsiB486
Cucsa.303110Bottle gourd (USVL1VR-Ls)cgylsiB489
Cucsa.303110Melon (DHL92) v3.6.1cgymedB495
Cucsa.303110Melon (DHL92) v3.6.1cgymedB496
Cucsa.303110Silver-seed gourdcarcgyB1054
Cucsa.303110Cucumber (Chinese Long) v3cgycucB466
Cucsa.303110Cucumber (Chinese Long) v3cgycucB471
Cucsa.303110Watermelon (97103) v2cgywmbB522
Cucsa.303110Watermelon (97103) v2cgywmbB524
Cucsa.303110Watermelon (97103) v2cgywmbB526
Cucsa.303110Wax gourdcgywgoB603
Cucsa.303110Wax gourdcgywgoB609
Cucsa.303110Cucumber (Gy14) v1cgycgyB087
Cucsa.303110Cucurbita maxima (Rimu)cgycmaB0833
Cucsa.303110Cucumber (Chinese Long) v2cgycuB435
Cucsa.303110Cucurbita moschata (Rifu)cgycmoB0824
Cucsa.303110Cucurbita moschata (Rifu)cgycmoB0828
Cucsa.303110Cucurbita moschata (Rifu)cgycmoB0836
Cucsa.303110Wild cucumber (PI 183967)cgycpiB453
Cucsa.303110Wild cucumber (PI 183967)cgycpiB454
Cucsa.303110Wild cucumber (PI 183967)cgycpiB458
Cucsa.303110Cucumber (Chinese Long) v2cgycuB430
Cucsa.303110Cucumber (Chinese Long) v2cgycuB431
Cucsa.303110Melon (DHL92) v3.5.1cgymeB496
Cucsa.303110Melon (DHL92) v3.5.1cgymeB497
Cucsa.303110Watermelon (Charleston Gray)cgywcgB521
Cucsa.303110Watermelon (Charleston Gray)cgywcgB523
Cucsa.303110Watermelon (97103) v1cgywmB549