Cucsa.299550 (gene) Cucumber (Gy14) v1

NameCucsa.299550
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMicrotubule associated protein (Ase1)
Locationscaffold02920 : 106798 .. 107463 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAATGATGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGTTTGTTCTTAAGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAGTTGTTGATGGGTTTGTTGAATTGTCTACTCGTATTGTAATGATAAGAAAAGATAAACTCTACTATCAAGTATGGATAGATCATTTGAGGAATATGCATGAGAGAAAGTTGTAT

mRNA sequence

ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAATGATGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGTTTGTTCTTAAGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAGTTGTTGATGGGTTTGTTGAATTGTCTACTCGTATTGTAATGATAAGAAAAGATAAACTCTACTATCAAGTATGGATAGATCATTTGAGGAATATGCATGAGAGAAAGTTGTAT

Coding sequence (CDS)

ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAA

Protein sequence

MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL*
BLAST of Cucsa.299550 vs. TrEMBL
Match: A0A0A0L054_CUCSA (Microtubule associated protein (Ase1) OS=Cucumis sativus GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-84
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60
           MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY
Sbjct: 39  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 98

Query: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120
           IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF
Sbjct: 99  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 158

Query: 121 YSSNSGSFTYISKFIVLFVCLLHFVL 147
           YSSNSGSFTYISKFIVLFVCLLHFVL
Sbjct: 159 YSSNSGSFTYISKFIVLFVCLLHFVL 184

BLAST of Cucsa.299550 vs. TrEMBL
Match: A0A061GKL0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-21
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 1

Query: 22  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-----------SYIPPPPPNFY- 81
           L   +S+ +M  PS G LCISDC+TCPVIC+ PPPPL            + PPP P +Y 
Sbjct: 6   LTRVTSEDEMGAPSAGLLCISDCATCPVICSPPPPPLLKSFPPPSPSVHHSPPPVPYYYF 65

Query: 82  ---GGFNMAPPATP---------------SYYLWGPPPPVANYFLGARPSGEMPQTVGPR 141
                ++  PP+ P               SY   G PPP   YF  A P    P  +GP 
Sbjct: 66  PPQSEYHSPPPSEPVSPPSPPRPPPPAPSSYSSKGSPPPPFKYFYNAPPGQGPPTVLGPH 125

Query: 142 DYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL 147
           +Y YPYYYFY+S + S  + +   ++ + L H VL
Sbjct: 126 EYPYPYYYFYASKASSLPFQASLSLVMLVLFHVVL 160

BLAST of Cucsa.299550 vs. TrEMBL
Match: W1P760_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00086p00122850 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1

Query: 9   ILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP---LSYIPPP- 68
           +LG    W +A  +    S AQ  +P+TG LCISDC++CPVIC  PPPP       P P 
Sbjct: 10  VLGRGRWWWMAVMILLMGSSAQ-ELPATGLLCISDCASCPVICAPPPPPSQQYGATPTPH 69

Query: 69  --PPNFYGGFNMAPPATPSYYLWG---PPPPVANYFLGARPSGEMPQTVGPRDYSYPYYY 128
             PP      +  PP  PSYY      PPPP +NY          P + G   Y YPYY+
Sbjct: 70  KSPPPIISSSSFPPPPPPSYYSSSSVPPPPPPSNYVNVPSVQQPPPPSRGGSGYPYPYYF 129

Query: 129 FYSSNSG----SFTYISKFIVL 138
           FYSS+SG     F+++S F +L
Sbjct: 130 FYSSSSGVSAHPFSFLSSFFLL 150

BLAST of Cucsa.299550 vs. TrEMBL
Match: I1JTY5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G053000 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 55/138 (39.86%), Postives = 70/138 (50.72%), Query Frame = 1

Query: 26  SSKAQMAVPSTGQLCISDCSTCPVICTAPP------------------PPLSYIPPPPPN 85
           SS+ ++  PS+G  CISDC+ CPVIC+ PP                  PPLSY+ PPPP 
Sbjct: 30  SSEEKVEDPSSGLFCISDCAKCPVICSPPPPMLITPPHPPTSPSVPHSPPLSYLSPPPPK 89

Query: 86  FYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSG-EMPQTV---GPRDYSYPYYYFYSS 142
                 + PP  PS     PPPP  +Y     PSG   PQ      P D+SYPYYYFY+S
Sbjct: 90  ----SQLPPPPPPSRI--APPPPFKSY--NTPPSGLTQPQPTVISAPHDFSYPYYYFYAS 149

BLAST of Cucsa.299550 vs. TrEMBL
Match: F8WL72_CITUN (Putative uncharacterized protein ORF05 OS=Citrus unshiu GN=ORF05 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = 1

Query: 17  IVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP------------------PPL 76
           ++   L   +++ Q A P+ G LCISDC+TCPVIC+ PP                  PP 
Sbjct: 23  MMTMMLKGVAAEDQTAGPAAGLLCISDCATCPVICSPPPPSPEESDTPVAPPPTHHSPPQ 82

Query: 77  SYIPPPPPNFYGGFNMAPPATP--------SYYLWGPPPPVANYFLGARPSGEMPQTVGP 136
           SY   PPP         PP  P        S   WG PPP    +    P G+ P T  P
Sbjct: 83  SYYHSPPPPSPTSSPPPPPPPPRTSEPPSGSSPSWGTPPPPPFKYNNNVPPGQGPPTTVP 142

Query: 137 RDYSYPYYYFYSSNSGSFTYISKFIVLFV 140
            DY YPYYYFY+S + S +  +  +++ +
Sbjct: 143 HDYPYPYYYFYASRASSLSCQASILLMIL 171

BLAST of Cucsa.299550 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-11
Identity = 49/165 (29.70%), Postives = 70/165 (42.42%), Query Frame = 1

Query: 15  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSY 74
           L +V     S S +  +  P    LCIS+CSTCP IC+ PP               PLS 
Sbjct: 10  LVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSS 69

Query: 75  IPPPPPNFYG-----GFNMAPPATPSYYLWGPPPPVANYFLGARP--------SGEMP-- 134
            PPPPP           +++PP  P   +  PPPP   YF    P         G  P  
Sbjct: 70  SPPPPPPHKHSPPPLSQSLSPP--PLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSV 129

Query: 135 ---------QTVGPRD--YSYPYYYFYSSNSGSFTYISKFIVLFV 140
                    Q+ G +   Y +PY+YFY++++ +  + S F++  V
Sbjct: 130 PSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATLLFSSSFLIALV 168

BLAST of Cucsa.299550 vs. NCBI nr
Match: gi|700200192|gb|KGN55350.1| (Microtubule associated protein (Ase1) [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 5.9e-84
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60
           MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY
Sbjct: 39  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 98

Query: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120
           IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF
Sbjct: 99  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 158

Query: 121 YSSNSGSFTYISKFIVLFVCLLHFVL 147
           YSSNSGSFTYISKFIVLFVCLLHFVL
Sbjct: 159 YSSNSGSFTYISKFIVLFVCLLHFVL 184

BLAST of Cucsa.299550 vs. NCBI nr
Match: gi|731385032|ref|XP_010648362.1| (PREDICTED: extensin [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 5.5e-21
Identity = 60/140 (42.86%), Postives = 72/140 (51.43%), Query Frame = 1

Query: 27  SKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIP------------------PPPPNF 86
           S+ Q  VP TG LCISDC+TCPVIC+ PPPP  Y P                  PPPP+ 
Sbjct: 34  SEDQTGVPPTGMLCISDCATCPVICSPPPPPSEYKPPHSPPSHHSPAPAYHSHSPPPPSS 93

Query: 87  YGGFNMAPPATPSYYL-WGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSGS 141
                 +PP  PS+Y  W  PPP  NY     PSG  P   G   Y YPYYYFY+SNS S
Sbjct: 94  PSPPPPSPPPPPSFYFSWDAPPPPFNYI--GIPSGPAPPAKGQPGYGYPYYYFYASNSFS 153

BLAST of Cucsa.299550 vs. NCBI nr
Match: gi|590574196|ref|XP_007012334.1| (Uncharacterized protein TCM_037325 [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 1

Query: 22  LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-----------SYIPPPPPNFY- 81
           L   +S+ +M  PS G LCISDC+TCPVIC+ PPPPL            + PPP P +Y 
Sbjct: 6   LTRVTSEDEMGAPSAGLLCISDCATCPVICSPPPPPLLKSFPPPSPSVHHSPPPVPYYYF 65

Query: 82  ---GGFNMAPPATP---------------SYYLWGPPPPVANYFLGARPSGEMPQTVGPR 141
                ++  PP+ P               SY   G PPP   YF  A P    P  +GP 
Sbjct: 66  PPQSEYHSPPPSEPVSPPSPPRPPPPAPSSYSSKGSPPPPFKYFYNAPPGQGPPTVLGPH 125

Query: 142 DYSYPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL 147
           +Y YPYYYFY+S + S  + +   ++ + L H VL
Sbjct: 126 EYPYPYYYFYASKASSLPFQASLSLVMLVLFHVVL 160

BLAST of Cucsa.299550 vs. NCBI nr
Match: gi|1009168446|ref|XP_015902662.1| (PREDICTED: extensin-1 [Ziziphus jujuba])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 64/171 (37.43%), Postives = 80/171 (46.78%), Query Frame = 1

Query: 16  WIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP------------------- 75
           +I   TL + +   Q+  P  G LCISDC+TCPVIC+ PPP                   
Sbjct: 19  FIALLTLATLTYGGQVGDPQAGLLCISDCATCPVICSPPPPILQSHPPPSPSLPTSPPPE 78

Query: 76  ----PLSYI----------------PPPPPNFYGGFNMAPPATPSYY-LWGPPPPVANYF 135
               P SY                 P PPP+ +       P +PS+Y  WG PPP  NYF
Sbjct: 79  HHSPPQSYYGFPPPPSAPSTPPPSPPSPPPSPHKETPPTSPPSPSWYPSWGTPPPPFNYF 138

Query: 136 LGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSF--TYISKFIVLFVCLLHF 145
               PSG +  T GP DYSYPYYYFYSS + S    ++S +   F+ LL F
Sbjct: 139 -NQPPSGPLTPTRGPHDYSYPYYYFYSSEASSLFSVHVSSY---FLILLFF 185

BLAST of Cucsa.299550 vs. NCBI nr
Match: gi|586682932|ref|XP_006841135.1| (PREDICTED: formin-like protein 20 [Amborella trichopoda])

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1

Query: 9   ILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPP---LSYIPPP- 68
           +LG    W +A  +    S AQ  +P+TG LCISDC++CPVIC  PPPP       P P 
Sbjct: 10  VLGRGRWWWMAVMILLMGSSAQ-ELPATGLLCISDCASCPVICAPPPPPSQQYGATPTPH 69

Query: 69  --PPNFYGGFNMAPPATPSYYLWG---PPPPVANYFLGARPSGEMPQTVGPRDYSYPYYY 128
             PP      +  PP  PSYY      PPPP +NY          P + G   Y YPYY+
Sbjct: 70  KSPPPIISSSSFPPPPPPSYYSSSSVPPPPPPSNYVNVPSVQQPPPPSRGGSGYPYPYYF 129

Query: 129 FYSSNSG----SFTYISKFIVL 138
           FYSS+SG     F+++S F +L
Sbjct: 130 FYSSSSGVSAHPFSFLSSFFLL 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L054_CUCSA4.1e-84100.00Microtubule associated protein (Ase1) OS=Cucumis sativus GN=Csa_4G646240 PE=4 SV... [more]
A0A061GKL0_THECC5.0e-2137.42Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1[more]
W1P760_AMBTC1.8e-1840.85Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00086p00122850 PE=4 SV=... [more]
I1JTY5_SOYBN2.8e-1639.86Uncharacterized protein OS=Glycine max GN=GLYMA_04G053000 PE=4 SV=1[more]
F8WL72_CITUN1.4e-1534.23Putative uncharacterized protein ORF05 OS=Citrus unshiu GN=ORF05 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11990.19.3e-1129.70 proline-rich family protein[more]
Match NameE-valueIdentityDescription
gi|700200192|gb|KGN55350.1|5.9e-84100.00Microtubule associated protein (Ase1) [Cucumis sativus][more]
gi|731385032|ref|XP_010648362.1|5.5e-2142.86PREDICTED: extensin [Vitis vinifera][more]
gi|590574196|ref|XP_007012334.1|7.1e-2137.42Uncharacterized protein TCM_037325 [Theobroma cacao][more]
gi|1009168446|ref|XP_015902662.1|1.9e-1837.43PREDICTED: extensin-1 [Ziziphus jujuba][more]
gi|586682932|ref|XP_006841135.1|2.5e-1840.85PREDICTED: formin-like protein 20 [Amborella trichopoda][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.299550.1Cucsa.299550.1mRNA


The following gene(s) are paralogous to this gene:

None