Cucsa.265730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.265730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cysteine and histidine-rich domain-containing protein RAR1
Location	scaffold02352 : 148168 .. 150666 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAGTAAGTTCACATCGACCTATTGGCTCTCAAGAATATCTTAGTTTGTTTTCATACAAGGATTATGTTTTTCTTTAAATATATATTTGAGAGAAGGTAAGTTGAAATATCTTTTGCAGCCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGGTCAGATCTTTTTCATTCTTGTATTTTTAATTGGAATGCTACACTGTTTCCATGCATAATTGATATGAACTGATGTTTGTTGATTCCATTCCGACACTTTCCTAGAATATACATATTACTTTTGTACAAATAGTAGTTTTTTTCAGGGCAATTCTAAATATGAACCAAGTATTGGTATCCAGACACTCAAGACTATTTACTCTTATGTTTTAGATGCATCAATTTTGCTACGGATCGTATAATCATTTTTGTACTCAATTTCCGGCTTTGGGTCCTGTCATACCCTGATGTGCAACAGATTCACGTACTTCTTCATTACCCATCATATTCTGAAAGATGGGTGGGTGTGACTTTTTTGTGCTGTCACTTTGCTCCTCGATAATGTTTTTGCCTAAGAATTATTTGATCCTACTACATTTGGCTTCTAAGAAAACTAGTAGGATATTAAATTCTTGGGTAACTTAAACTTGTTCCATCAAAACTATTTGCATTGGCTCGTGTTGACTGTTAAGCCACACACAATGGTTTAATGACATGAATTATTCCCTGTTTATATGGTTTTTCATTTGGACTCTGGAAGGTTTGTGTTGTTTTCATAATGCTTTTTTGTGACAAGTATGACATGTTCTTCCGCATAGAATACATTCTTGTTTTTCTGATTTTCATTTCTGTAAATCTATCTACAATTTATACAAGTGAGAATACCTTTCATGTTTAAGACTTAGATGGATGATATTAAAAGCTAAGGTTGGTCTTCGAAAGCCTTTTAAGTTGAATCAAAGTTGTAGTTTTTGTTGACTTTTTTTAATAAAGATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTAAGCGCATCTTTTTACTTTTTTCAATTTGTATCTTGGAGTACCGTACCTGGATTTTATGCTATATCTGCAGATGAGTTTGGTATCCTTATTTGGCAATTCTCCTGAATGTTAACATTGCAATTTAATCCAAGTTTGAATCTTAGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGGTGAGATCATTTATTTACTAAACTTAAAATACACCTTTTTTTGTCGTCATGGCATTTGATTATAGATTATCAACTACTGATATTGATACTTTTTATGTTTGATTTAAAGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGGTATTTAGGTTCTTGTATTTTAGAAGGATGTGCTAACCCTTTGGAATTCTGTTTCAGTTAATTTTTTCTTATTCGATGAAATCCCTCAATCTAGACAAATTTATATATTGCATATTTCTCCACTCCATCTTCCTTCCAGAATTGATTGAACTACCAGAAGCTTTGCAAAGACAATCTATTTACTTCCGAGATAAATATCATAATAGTTTATATGGTACAGAGTTTACCATGAACTTTTATTGGACTTGTTTTGTAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCATATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTGTCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATGGACATGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTA

mRNA sequence

TGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGACCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCATATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTGTCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATGGACATGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTA

Coding sequence (CDS)

TGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGACCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAATTGGTATGAATGA

Protein sequence

CCLVPLLRNVYFTNCLFPFTCHAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKKNWYE*

Homology

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BLAST of Cucsa.265730 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 68/115 (59.13%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GP FHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVL K        +
Sbjct: 31  CQFHAS-GPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKHPVAA 90

Query: 91  PPSSM-TNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P SS   N   K+ C+RC+QGFFCSDHG+Q K   + I +T   PG +  +   P
Sbjct: 91  PTSSPDANAATKDSCSRCRQGFFCSDHGSQPK---EQIKQTLNTPGQAEEEKIEP 141

[Close]

BLAST of Cucsa.265730 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GP+FHDGMK+WSCCK++SHDFSLFL IPGCKTGKHTTEKP+     T   K  
Sbjct: 45  CQYHPS-GPMFHDGMKQWSCCKQKSHDFSLFLAIPGCKTGKHTTEKPITKAVPTKPSKAV 104

Query: 91  PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKK 148
           P  +   ++G + C+RC+QGFFCSDHG+Q K    +    + +          P+KK
Sbjct: 105 PVQTSKQSVGADTCSRCRQGFFCSDHGSQPKAQIPTATSDTNMVPVEKPAVPPPKKK 160

[Close]

BLAST of Cucsa.265730 vs. Swiss-Prot
Match: CHRD1_HUMAN (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 39  PIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNT 98
           P+FHD +K WSCCK+R+ DFS FL I GC  G+H +EKP          +P  P   T T
Sbjct: 31  PVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP---------PEPVKPEVKT-T 86

Query: 99  LGKELC 105
             KELC
Sbjct: 91  EKKELC 86

HSP 2 Score: 58.9 bits (141), Expect = 5.5e-08
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 20  TCHAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEK 77
           T      L E+C  H S  PIFH+GMK WSCC++++ DF+ FL   GC  GKH   K
Sbjct: 165 TYQGLESLEEVCVYH-SGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTK 220

[Close]

BLAST of Cucsa.265730 vs. Swiss-Prot
Match: CHRD1_PIG (Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 20  TCHAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEK 77
           T      L E+C  H S  PIFH+GMK WSCC++++ DF+ FL   GC TGKHT  K
Sbjct: 165 TYQGPQSLEEVCVYH-SGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHTWTK 220

HSP 2 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 39 PIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKP 78
          P+FHD +K WSCCK+R+ DFS FL I GC  G+H +EKP
Sbjct: 31 PVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRHNSEKP 69

[Close]

BLAST of Cucsa.265730 vs. Swiss-Prot
Match: CHRD1_BOVIN (Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-09
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 39 PIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKP 78
          P+FHD +K WSCCK+R+ DFS FL I GC  G+H +EKP
Sbjct: 31 PVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP 69

HSP 2 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1


Query: 20  TCHAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEK 77
           T      L E+C  H S  PIFH+GMK WSCC++++ DF+ FL   GC TGKH   K
Sbjct: 165 TYQGPQSLEEVCVYH-SGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHMWTK 220

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BLAST of Cucsa.265730 vs. TrEMBL
Match: A0A0A0LKX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110230 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.5e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 45  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 104
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60

Query: 105 ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 149
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK
Sbjct: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 104

[Close]

BLAST of Cucsa.265730 vs. TrEMBL
Match: A0A067FQA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027086mg PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 75/119 (63.03%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GPIFHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+
Sbjct: 33  CTFHDS-GPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPA 92

Query: 91  PPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P  + + TLG     KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P
Sbjct: 93  PAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVP 147

[Close]

BLAST of Cucsa.265730 vs. TrEMBL
Match: V4S837_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 75/119 (63.03%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GPIFHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+
Sbjct: 33  CTFHDS-GPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPA 92

Query: 91  PPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P  + + TLG     KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P
Sbjct: 93  PAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVP 147

[Close]

BLAST of Cucsa.265730 vs. TrEMBL
Match: V4U6X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 74/119 (62.18%), Postives = 84/119 (70.59%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S  PIFHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+
Sbjct: 33  CTFHDS--PIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPA 92

Query: 91  PPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P  + + TLG     KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P
Sbjct: 93  PAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVP 146

[Close]

BLAST of Cucsa.265730 vs. TrEMBL
Match: V9HXG0_NICAT (RAR1 (Fragment) OS=Nicotiana attenuata PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 75/123 (60.98%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GP+FHDGMK+WSCCKK SHDFSLFLEIPGCKTGKHTTEKPV+ KP     +  
Sbjct: 24  CTYHES-GPLFHDGMKKWSCCKKSSHDFSLFLEIPGCKTGKHTTEKPVIAKPAANRNRAI 83

Query: 91  P-PSSMTNTLGKELCARCQQGFFCSDHGTQIK-GNNKSINETSTIPGASNTDTQ---APQ 149
           P P+SM N   K+ C RC+QGFFCSDHG+Q +    K+ N T+++P  SNT  Q   AP 
Sbjct: 84  PAPTSMANVSPKDACPRCRQGFFCSDHGSQPREAIPKASNTTTSVPSESNTGQQSHPAPV 143

[Close]

BLAST of Cucsa.265730 vs. TAIR10
Match: AT5G51700.1 (AT5G51700.1 protein binding;zinc ion binding)

HSP 1 Score: 137.5 bits (345), Expect = 6.9e-33
Identity = 68/115 (59.13%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GP FHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVL K        +
Sbjct: 31  CQFHAS-GPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKHPVAA 90

Query: 91  PPSSM-TNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P SS   N   K+ C+RC+QGFFCSDHG+Q K   + I +T   PG +  +   P
Sbjct: 91  PTSSPDANAATKDSCSRCRQGFFCSDHGSQPK---EQIKQTLNTPGQAEEEKIEP 141

[Close]

BLAST of Cucsa.265730 vs. NCBI nr
Match: gi|659082603|ref|XP_008441929.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1, partial [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 6.6e-78
Identity = 139/149 (93.29%), Postives = 142/149 (95.30%), Query Frame = 1


Query: 1   CCLVPLLRNVYFTNCLFPFTCHAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSL 60
           CCLVPLLRNVYFTNCLFPFTC+AATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSL
Sbjct: 9   CCLVPLLRNVYFTNCLFPFTCYAATGLVEICGLHCSQGPIFHDGMKEWSCCKKRSHDFSL 68

Query: 61  FLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPP-SSMTNTLGKELCARCQQGFFCSDHGTQ 120
           FLEIPGCKTGKHTTEKPVLTKPTT VKK SPP SSMTNTLGKE CARCQQGFFCSDHGTQ
Sbjct: 69  FLEIPGCKTGKHTTEKPVLTKPTTAVKKLSPPLSSMTNTLGKESCARCQQGFFCSDHGTQ 128

Query: 121 IKGNNKSINETSTIPGASNTDTQAPQKKK 149
           IKG NKSINETSTIPGASNTDTQ P ++K
Sbjct: 129 IKGTNKSINETSTIPGASNTDTQXPLQQK 157

[Close]

BLAST of Cucsa.265730 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-61
Identity = 114/118 (96.61%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS
Sbjct: 29  CQYHDS-GPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 88

Query: 91  PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 149
           PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK
Sbjct: 89  PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 145

[Close]

BLAST of Cucsa.265730 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-60
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S  PIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS
Sbjct: 29  CQYHDS--PIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 88

Query: 91  PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 149
           PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK
Sbjct: 89  PPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 144

[Close]

BLAST of Cucsa.265730 vs. NCBI nr
Match: gi|778668197|ref|XP_011649054.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 45  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 104
           MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC
Sbjct: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELC 60

Query: 105 ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 149
           ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK
Sbjct: 61  ARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAPQKKK 104

[Close]

BLAST of Cucsa.265730 vs. NCBI nr
Match: gi|567858174|ref|XP_006421770.1| (hypothetical protein CICLE_v10005807mg [Citrus clementina])

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-35
Identity = 75/119 (63.03%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 31  CGLHCSQGPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLTKPTTGVKKPS 90
           C  H S GPIFHDGMKEWSCCK+RSHDFSLFLEIPGCKTGKHTTEKPVLTKP    K P+
Sbjct: 33  CTFHDS-GPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLTKPVATSKTPA 92

Query: 91  PPSSMTNTLG-----KELCARCQQGFFCSDHGTQIKGNNKSINETSTIPGASNTDTQAP 145
           P  + + TLG     KELC+RC+QGFFCSDHG+Q K   +  N    +P  SN   + P
Sbjct: 93  PAPAPSTTLGSSTPSKELCSRCRQGFFCSDHGSQAK---EQTNYAPAVPAGSNVAAEVP 147

The following BLAST results are available for this feature:

BLAST of Cucsa.265730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAR1_ARATH	1.2e-31	59.13	Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thalia...	[more]
RAR1_ORYSJ	2.0e-29	50.43	Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp...	[more]
CHRD1_HUMAN	1.7e-09	48.48	Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORD...	[more]
CHRD1_PIG	2.2e-09	50.88	Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa GN=CHORDC1...	[more]
CHRD1_BOVIN	5.0e-09	61.54	Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1...	[more]

BLAST of Cucsa.265730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKX0_CUCSA	8.5e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110230 PE=4 SV=1	[more]
A0A067FQA4_CITSI	2.8e-35	63.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027086mg PE=4 SV=1	[more]
V4S837_9ROSI	2.8e-35	63.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1	[more]
V4U6X4_9ROSI	1.8e-34	62.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1	[more]
V9HXG0_NICAT	1.6e-33	60.98	RAR1 (Fragment) OS=Nicotiana attenuata PE=2 SV=1	[more]

BLAST of Cucsa.265730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51700.1	6.9e-33	59.13	protein binding;zinc ion binding	[more]

BLAST of Cucsa.265730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082603\|ref\|XP_008441929.1\|	6.6e-78	93.29	PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing pr...	[more]
gi\|449442307\|ref\|XP_004138923.1\|	5.6e-61	96.61	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1...	[more]
gi\|778668194\|ref\|XP_011649053.1\|	3.6e-60	95.76	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2...	[more]
gi\|778668197\|ref\|XP_011649054.1\|	1.2e-55	100.00	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3...	[more]
gi\|567858174\|ref\|XP_006421770.1\|	4.1e-35	63.03	hypothetical protein CICLE_v10005807mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007051	CHORD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.265730.1	Cucsa.265730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007051	CHORD domain	PFAM	PF04968	CHORD	coord: 30..72 score: 1.0
IPR007051	CHORD domain	PROFILE	PS51401	CHORD	coord: 1..72 score: 19
None	No IPR available	PANTHER	PTHR12621	CYSTEINE AND HISTIDINE-RICH DOMAIN CHORD -CONTAINING PROTEIN	coord: 39..78 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.265730	Csa2G110230	Cucumber (Chinese Long) v2	cgycuB382
Cucsa.265730	CSPI02G08450	Wild cucumber (PI 183967)	cgycpiB403
Cucsa.265730	Lsi11G009890	Bottle gourd (USVL1VR-Ls)	cgylsiB433
Cucsa.265730	CsaV3_2G010830	Cucumber (Chinese Long) v3	cgycucB408

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.265730	Melon (DHL92) v3.6.1	cgymedB443
Cucsa.265730	Wax gourd	cgywgoB544
Cucsa.265730	Cucurbita moschata (Rifu)	cgycmoB0734
Cucsa.265730	Cucurbita maxima (Rimu)	cgycmaB0744
Cucsa.265730	Melon (DHL92) v3.5.1	cgymeB447