Cucsa.257470 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.257470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold02229 : 4745998 .. 4746706 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAACTAATATGCTGACCTTCACAAAGCATGAAAAGAAGCGAAGCTTTTCCAAAGTCACTCCTACCACCAACAAACAGCCTTTtCCCCTCTCAATATCACTCTTTtGCAACCCAAAGTTCTGATTCAGAGAAAGATAATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAATCCTATCCTAGTACTAGCATAATATAGCTTTTTCTTATCACTTCCACATGTATGCTTTTGTATACATATTCAGTTATCCATCTCTCTTGCTAGTAGGCAAAGTGACTTACTTTGACCAACAAGAGAACAAGCCCTCTCCATGGAGTCTACTAATATATTTTAATGAAAACTTAAACACTCTATCTTCATGTGACTAATGAGTTGTTGAAGACATCAAATTTAAAAGTCAGATGTATAATCT

mRNA sequence

ATCAACTAATATGCTGACCTTCACAAAGCATGAAAAGAAGCGAAGCTTTTCCAAAGTCACTCCTACCACCAACAAACAGCCTTTTCCCCTCTCAATATCACTCTTTTGCAACCCAAAGTTCTGATTCAGAGAAAGATAATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAATCCTATCCTAGTACTAGCATAATATAGCTTTTTCTTATCACTTCCACATGTATGCTTTTGTATACATATTCAGTTATCCATCTCTCTTGCTAGTAGGCAAAGTGACTTACTTTGACCAACAAGAGAACAAGCCCTCTCCATGGAGTCTACTAATATATTTTAATGAAAACTTAAACACTCTATCTTCATGTGACTAATGAGTTGTTGAAGACATCAAATTTAAAAGTCAGATGTATAATCT

Coding sequence (CDS)

ATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAA

Protein sequence

MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL*

Homology

[Close]

BLAST of Cucsa.257470 vs. TrEMBL
Match: A0A0A0L4E9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126815 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.7e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 110
           SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]

BLAST of Cucsa.257470 vs. TrEMBL
Match: W9R577_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023808 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPV 66
           GPSP+VP + VG LG++I WP L S+WE + P+L+LG  +A++LL L+LL+H LS +FP 
Sbjct: 6   GPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLSSYFPT 65

Query: 67  LHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 110
           L +S   +    +S  G   DGFGFG   ++L LLFLVLY L+
Sbjct: 66  LGSSCFGYGYASASDGG---DGFGFG---MILLLLFLVLYNLV 102

[Close]

BLAST of Cucsa.257470 vs. TrEMBL
Match: A0A061EZ51_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025744 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 6   AGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELG--------IWVAVILLFLLLLV 65
           +GPSP+VP ++VG LG++IF PTL SI E + PL E G        + + ++LL LL+LV
Sbjct: 4   SGPSPLVPSLMVGVLGLVIFGPTLQSILEFVLPLFEAGDSESDTFYVVMVLVLLLLLVLV 63

Query: 66  HFLSIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVL 106
             LS FFP LH  SS  +VQ +SS  +D    GFG G L+L +LFLVL
Sbjct: 64  QLLSTFFPTLHMFSSP-SVQQTSSSAFDD---GFGLGTLILVVLFLVL 107

[Close]

BLAST of Cucsa.257470 vs. TrEMBL
Match: A0A0S3SVN8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G029000 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWP-------TLSSIWESIEPLLELGIWVAVILLFLLLLVH- 66
           GPSP++P + +  LG +I+WP       TLSS ++ +  + E  +   +IL+FL+LLV+ 
Sbjct: 4   GPSPLMPSLFLLCLGFLIYWPSLFPFIDTLSSSFQWVSEVEEKSV-TTLILVFLVLLVYV 63

Query: 67  FLSIFFPVLHASSSTFAVQHSSS-PGYDADGFGFGSGALLLGLLFLVLYYL 109
           F+ +       +SS +AV H +S    D  GF FG G LL  LLF++LY L
Sbjct: 64  FIHLPSSFPFGNSSNYAVNHHASISNRDIGGFEFGLGTLLFFLLFILLYNL 113

[Close]

BLAST of Cucsa.257470 vs. TrEMBL
Match: K7KE07_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G094100 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIW--------VAVILLFLLLLVH 66
           GPSP++P + +  LG +I+WP+L SI +++   L+   W        VA ++L LL+L+ 
Sbjct: 4   GPSPLMPSLFLLCLGFLIYWPSLFSILDTLLTSLQ---WISEVDEKSVATLILVLLVLLV 63

Query: 67  FLSIFFPVLHA-SSSTFAV-QHSSSPGYDADGFGFGSGALLLGLLFLVLYYL 109
           +  I  P     S S++ + +H S   +D  GF FG G LLL LLF++LY L
Sbjct: 64  YAFIHLPSSFPFSKSSYGINRHVSISSHDYAGFEFGLGTLLLFLLFILLYNL 112

[Close]

BLAST of Cucsa.257470 vs. NCBI nr
Match: gi|700201485|gb|KGN56618.1| (hypothetical protein Csa_3G126815 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 110
           SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]

BLAST of Cucsa.257470 vs. NCBI nr
Match: gi|703103202|ref|XP_010097668.1| (hypothetical protein L484_023808 [Morus notabilis])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPV 66
           GPSP+VP + VG LG++I WP L S+WE + P+L+LG  +A++LL L+LL+H LS +FP 
Sbjct: 6   GPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLSSYFPT 65

Query: 67  LHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 110
           L +S   +    +S  G   DGFGFG   ++L LLFLVLY L+
Sbjct: 66  LGSSCFGYGYASASDGG---DGFGFG---MILLLLFLVLYNLV 102

[Close]

BLAST of Cucsa.257470 vs. NCBI nr
Match: gi|590640144|ref|XP_007029873.1| (Uncharacterized protein TCM_025744 [Theobroma cacao])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 6   AGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELG--------IWVAVILLFLLLLV 65
           +GPSP+VP ++VG LG++IF PTL SI E + PL E G        + + ++LL LL+LV
Sbjct: 4   SGPSPLVPSLMVGVLGLVIFGPTLQSILEFVLPLFEAGDSESDTFYVVMVLVLLLLLVLV 63

Query: 66  HFLSIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVL 106
             LS FFP LH  SS  +VQ +SS  +D    GFG G L+L +LFLVL
Sbjct: 64  QLLSTFFPTLHMFSSP-SVQQTSSSAFDD---GFGLGTLILVVLFLVL 107

[Close]

BLAST of Cucsa.257470 vs. NCBI nr
Match: gi|965610819|dbj|BAT96958.1| (hypothetical protein VIGAN_09029000 [Vigna angularis var. angularis])

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWP-------TLSSIWESIEPLLELGIWVAVILLFLLLLVH- 66
           GPSP++P + +  LG +I+WP       TLSS ++ +  + E  +   +IL+FL+LLV+ 
Sbjct: 4   GPSPLMPSLFLLCLGFLIYWPSLFPFIDTLSSSFQWVSEVEEKSV-TTLILVFLVLLVYV 63

Query: 67  FLSIFFPVLHASSSTFAVQHSSS-PGYDADGFGFGSGALLLGLLFLVLYYL 109
           F+ +       +SS +AV H +S    D  GF FG G LL  LLF++LY L
Sbjct: 64  FIHLPSSFPFGNSSNYAVNHHASISNRDIGGFEFGLGTLLFFLLFILLYNL 113

[Close]

BLAST of Cucsa.257470 vs. NCBI nr
Match: gi|734364622|gb|KHN17335.1| (hypothetical protein glysoja_042829 [Glycine soja])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIW--------VAVILLFLLLLVH 66
           GPSP++P + +  LG +I+WP+L SI +++   L+   W        VA ++L LL+L+ 
Sbjct: 4   GPSPLMPSLFLLCLGFLIYWPSLFSILDTLLTSLQ---WISEVDEKSVATLILVLLVLLV 63

Query: 67  FLSIFFPVLHA-SSSTFAV-QHSSSPGYDADGFGFGSGALLLGLLFLVLYYL 109
           +  I  P     S S++ + +H S   +D  GF FG G LLL LLF++LY L
Sbjct: 64  YAFIHLPSSFPFSKSSYGINRHVSISSHDYAGFEFGLGTLLLFLLFILLYNL 112

The following BLAST results are available for this feature:

BLAST of Cucsa.257470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4E9_CUCSA	6.7e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126815 PE=4 SV=1	[more]
W9R577_9ROSA	1.1e-17	49.51	Uncharacterized protein OS=Morus notabilis GN=L484_023808 PE=4 SV=1	[more]
A0A061EZ51_THECC	2.3e-15	49.07	Uncharacterized protein OS=Theobroma cacao GN=TCM_025744 PE=4 SV=1	[more]
A0A0S3SVN8_PHAAN	3.6e-08	38.74	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G029000 PE=...	[more]
K7KE07_SOYBN	8.1e-08	37.50	Uncharacterized protein OS=Glycine max GN=GLYMA_03G094100 PE=4 SV=1	[more]

BLAST of Cucsa.257470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201485\|gb\|KGN56618.1\|	9.7e-55	100.00	hypothetical protein Csa_3G126815 [Cucumis sativus]	[more]
gi\|703103202\|ref\|XP_010097668.1\|	1.6e-17	49.51	hypothetical protein L484_023808 [Morus notabilis]	[more]
gi\|590640144\|ref\|XP_007029873.1\|	3.4e-15	49.07	Uncharacterized protein TCM_025744 [Theobroma cacao]	[more]
gi\|965610819\|dbj\|BAT96958.1\|	5.2e-08	38.74	hypothetical protein VIGAN_09029000 [Vigna angularis var. angularis]	[more]
gi\|734364622\|gb\|KHN17335.1\|	1.2e-07	37.50	hypothetical protein glysoja_042829 [Glycine soja]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.257470.1	Cucsa.257470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.257470	CmaCh00G006550	Cucurbita maxima (Rimu)	cgycmaB0708
Cucsa.257470	CmaCh06G011480	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.257470	CmoCh14G020270	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.257470	CmoCh06G011770	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.257470	Lsi05G019410	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.257470	CsaV3_3G009880	Cucumber (Chinese Long) v3	cgycucB387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.257470	Melon (DHL92) v3.6.1	cgymedB423
Cucsa.257470	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.257470	Silver-seed gourd	carcgyB1077
Cucsa.257470	Silver-seed gourd	carcgyB0269
Cucsa.257470	Silver-seed gourd	carcgyB0693
Cucsa.257470	Silver-seed gourd	carcgyB1191
Cucsa.257470	Cucumber (Chinese Long) v3	cgycucB398
Cucsa.257470	Watermelon (97103) v2	cgywmbB452
Cucsa.257470	Watermelon (97103) v2	cgywmbB455
Cucsa.257470	Wax gourd	cgywgoB506
Cucsa.257470	Wax gourd	cgywgoB513
Cucsa.257470	Cucumber (Gy14) v1	cgycgyB130
Cucsa.257470	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.257470	Cucurbita maxima (Rimu)	cgycmaB0715
Cucsa.257470	Cucurbita maxima (Rimu)	cgycmaB0730
Cucsa.257470	Cucurbita moschata (Rifu)	cgycmoB0708
Cucsa.257470	Cucurbita moschata (Rifu)	cgycmoB0719
Cucsa.257470	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.257470	Wild cucumber (PI 183967)	cgycpiB393
Cucsa.257470	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.257470	Cucumber (Chinese Long) v2	cgycuB374
Cucsa.257470	Melon (DHL92) v3.5.1	cgymeB429
Cucsa.257470	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.257470	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.257470	Watermelon (Charleston Gray)	cgywcgB454
Cucsa.257470	Watermelon (97103) v1	cgywmB479
Cucsa.257470	Watermelon (97103) v1	cgywmB484
Cucsa.257470	Cucurbita pepo (Zucchini)	cgycpeB0670
Cucsa.257470	Cucurbita pepo (Zucchini)	cgycpeB0677
Cucsa.257470	Cucurbita pepo (Zucchini)	cgycpeB0679
Cucsa.257470	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.257470	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.257470	Bottle gourd (USVL1VR-Ls)	cgylsiB410