CmoCh14G020270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G020270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 14841147 .. 14841470 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATACTGCAGGGCCATCACCTATTGTACCTTGCATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCAACTCTTCTATCCATCTGGGAGAGTGTAGAGTCTCTACTTGAACTGGGTACTTGGGTTGCAGTAATTCTTCTTTTCCTCTTACTACTTGTACACTTGCTTTCTTTTTTCTTTCCTGTTCTTCATGTTTCGTCCACTTTTGCAGTTCACCATAACAGCACCCCTGGCTATGATTCTGATGGTTTCGGTTTCGGGTCAGGAACATTGTTTCTAGGTCTTCTCTTCCTCGTCCTCTATAATTTGTTGTAA

mRNA sequence

ATGGGACATACTGCAGGGCCATCACCTATTGTACCTTGCATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCAACTCTTCTATCCATCTGGGAGAGTGTAGAGTCTCTACTTGAACTGGTTCACCATAACAGCACCCCTGGCTATGATTCTGATGGTTTCGGTTTCGGGTCAGGAACATTGTTTCTAGGTCTTCTCTTCCTCGTCCTCTATAATTTGTTGTAA

Coding sequence (CDS)

ATGGGACATACTGCAGGGCCATCACCTATTGTACCTTGCATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCAACTCTTCTATCCATCTGGGAGAGTGTAGAGTCTCTACTTGAACTGGTTCACCATAACAGCACCCCTGGCTATGATTCTGATGGTTTCGGTTTCGGGTCAGGAACATTGTTTCTAGGTCTTCTCTTCCTCGTCCTCTATAATTTGTTGTAA
Homology
[Close]
BLAST of CmoCh14G020270 vs. TrEMBL
Match: A0A0A0L4E9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126815 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-21
Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 1 

Query: 1   MGH-TAGPSPIVPCIIVGFLGMIIFWPTLLSIWESVESLLE--------------LVHH- 60
           MG+ TAGPSP+VPCIIVGFLGMIIFWPTL SIWES+E LLE              LVH  
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  ------------------NSTPGYDSDGFGFGSGTLFLGLLFLVLYNLL 76
                             +S+PGYD+DGFGFGSG L LGLLFLVLY LL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]
BLAST of CmoCh14G020270 vs. TrEMBL
Match: W9R577_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023808 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-06
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = 1 

Query: 1   MGHTAGPSPIVPCIIVGFLGMIIFWPTLLSIWESVESLLE--------------LVHHNS 60
           M    GPSP+VP + VG LG++I WP LLS+WE V  +L+              L+H  S
Sbjct: 1   MRERVGPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLS 60

Query: 61  T-----------PGYDS-----DGFGFGSGTLFLGLLFLVLYNLL 76
           +            GY S     DGFGFG   + L LLFLVLYNL+
Sbjct: 61  SYFPTLGSSCFGYGYASASDGGDGFGFG---MILLLLFLVLYNLV 102

[Close]
BLAST of CmoCh14G020270 vs. NCBI nr
Match: gi|700201485|gb|KGN56618.1| (hypothetical protein Csa_3G126815 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-21
Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 1 

Query: 1   MGH-TAGPSPIVPCIIVGFLGMIIFWPTLLSIWESVESLLE--------------LVHH- 60
           MG+ TAGPSP+VPCIIVGFLGMIIFWPTL SIWES+E LLE              LVH  
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  ------------------NSTPGYDSDGFGFGSGTLFLGLLFLVLYNLL 76
                             +S+PGYD+DGFGFGSG L LGLLFLVLY LL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]
BLAST of CmoCh14G020270 vs. NCBI nr
Match: gi|703103202|ref|XP_010097668.1| (hypothetical protein L484_023808 [Morus notabilis])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = 1 

Query: 1   MGHTAGPSPIVPCIIVGFLGMIIFWPTLLSIWESVESLLE--------------LVHHNS 60
           M    GPSP+VP + VG LG++I WP LLS+WE V  +L+              L+H  S
Sbjct: 1   MRERVGPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLS 60

Query: 61  T-----------PGYDS-----DGFGFGSGTLFLGLLFLVLYNLL 76
           +            GY S     DGFGFG   + L LLFLVLYNL+
Sbjct: 61  SYFPTLGSSCFGYGYASASDGGDGFGFG---MILLLLFLVLYNLV 102

The following BLAST results are available for this feature:
BLAST of CmoCh14G020270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G020270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4E9_CUCSA5.7e-2157.80Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126815 PE=4 SV=1[more]
W9R577_9ROSA6.7e-0640.95Uncharacterized protein OS=Morus notabilis GN=L484_023808 PE=4 SV=1[more]
BLAST of CmoCh14G020270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G020270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201485|gb|KGN56618.1|8.1e-2157.80hypothetical protein Csa_3G126815 [Cucumis sativus][more]
gi|703103202|ref|XP_010097668.1|9.6e-0640.95hypothetical protein L484_023808 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G020270.1CmoCh14G020270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G020270Cucsa.257470Cucumber (Gy14) v1cgycmoB0700
CmoCh14G020270CmaCh00G006550Cucurbita maxima (Rimu)cmacmoB013
CmoCh14G020270CmaCh06G011480Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G020270Lsi05G019410Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G020270CsaV3_3G009880Cucumber (Chinese Long) v3cmocucB0283
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G020270CmoCh06G011770Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G020270Wild cucumber (PI 183967)cmocpiB243
CmoCh14G020270Wild cucumber (PI 183967)cmocpiB263
CmoCh14G020270Cucumber (Chinese Long) v2cmocuB239
CmoCh14G020270Cucumber (Chinese Long) v2cmocuB257
CmoCh14G020270Melon (DHL92) v3.5.1cmomeB199
CmoCh14G020270Melon (DHL92) v3.5.1cmomeB230
CmoCh14G020270Watermelon (Charleston Gray)cmowcgB219
CmoCh14G020270Watermelon (Charleston Gray)cmowcgB225
CmoCh14G020270Watermelon (97103) v1cmowmB231
CmoCh14G020270Watermelon (97103) v1cmowmB241
CmoCh14G020270Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G020270Cucurbita pepo (Zucchini)cmocpeB234
CmoCh14G020270Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G020270Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G020270Bottle gourd (USVL1VR-Ls)cmolsiB211
CmoCh14G020270Cucumber (Gy14) v2cgybcmoB290
CmoCh14G020270Cucumber (Gy14) v2cgybcmoB717
CmoCh14G020270Melon (DHL92) v3.6.1cmomedB221
CmoCh14G020270Melon (DHL92) v3.6.1cmomedB260
CmoCh14G020270Silver-seed gourdcarcmoB0319
CmoCh14G020270Silver-seed gourdcarcmoB0850
CmoCh14G020270Silver-seed gourdcarcmoB1284
CmoCh14G020270Silver-seed gourdcarcmoB1444
CmoCh14G020270Cucumber (Chinese Long) v3cmocucB0308
CmoCh14G020270Watermelon (97103) v2cmowmbB243
CmoCh14G020270Watermelon (97103) v2cmowmbB249
CmoCh14G020270Wax gourdcmowgoB0294
CmoCh14G020270Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G020270Cucurbita moschata (Rifu)cmocmoB230
CmoCh14G020270Cucurbita moschata (Rifu)cmocmoB235
CmoCh14G020270Cucumber (Gy14) v1cgycmoB0992
CmoCh14G020270Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G020270Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G020270Cucurbita maxima (Rimu)cmacmoB880
CmoCh14G020270Cucurbita maxima (Rimu)cmacmoB885