Cucsa.255820 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.255820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-binding family protein
Locationscaffold02229 : 3642427 .. 3645245 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCACATTGCCACTCACCTCTGCTGTTCCCACCTCCTCCCCCATCAAATTTCACCACCATGGCCGCCGCCGCTGCCGCCACCGGAGCCTCCTTCTTCGCCACTTCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCGCAACCCCATCCACTCAAGTTTTGCCTATATTGTCCCGCTCTCTAGCCATTGAATCGCCTCTGCTCAGAGCTTCCTCGGAGAAGTGGCGGCCGGTTATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGACCGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTACATAGCCTGCAAATGTCACTGAGTAGTTTCTATATTGAATTCTAGTAAGCGATCACTTCTAAACAATTACATCATATGAAAACTTTGCTTTAGAATCAAATTCTCTCGAGTTATCTGGCAAATCACAATGTTGGGTTGGGGTATGAGAGCAACAGTTTTAATTCCTTTTGTATAATAGATGCTTGATTCCCATATTAAACAAGGTCACTAGGAGCTGCAACTTAAGAGACTAACTATATGACTATAGATCTAAATGTTTCTGAAGTAATGACCTCAAATCTTAGTGTCACCTACCAAAGTTTCTATGAGTTTTTGAGAAGTTGTTGGTTTAGGATATCGTATCATAAAGTTGTATAGAATTGAGATGCATGTTATTAGCTCAAACATACTAAGAAAAGCCACTAGCATGTTTAGGGGCATATAGGTTTGGTAGTTGGTGGCAAGGCAACTACTTGTTAAACCAATGAGCTATTATTTGTTCTATCAATTGCTGAAGAGTATGATTATATTACTAGGGTGCTAACAGTGACAAGATGGCATCCAGTATATTATTTATTCCAGGAATGTGCAACTTCAAGGGGCTGTATACGTAAATAGCGGGTGATCTTTTACCTTCACTGCCACTAAAATCGAAGCCCATAGCATTAACCTCAATTATTGCCACAAGTAATTAAATTAACTACCATGAGTTGGTGTATTAGTCATTTGGGAAGGGTGAAAAAGAAGAAATGAATTTAAATCATCGTGGCCATCCACAAAACGTTGTTCTATGAGATTAAAAAGAAGGGAAAAAAAaGCCATCAACCTTAATTAGAAAAAAAAaGAACATGGGTAGATCTAGTCTCATTCTTGCAGTGAAGACTTAAGTTTGATGGAACTCTGTTGCTAAGTAATAAGATTGGGGATCTACTCTCATCCTTGCAACGAAGCCTCGAGTTTGATGGCACTCTCTAGTCTCTAGCTACTTATCCGCTCTAGTTCAGATATTTAAAATACTGTTTCTGTTGTGTCGAAGAAATGTTAAGGCTCTCTGCTCATGGCTTTTGCTGTTTTCGTCGTGTCTAGCTTCACATATTAATGGTAAACGAAAAAaTGCATCCTTGTAAAAAGAAGACATGTAGTTGTATACTAATAACGATATTTAACTTATAGAAACTCTTGTTGGGCTTTAAGAAAGAAGTTCCAGTGTAGCAAAATTTTATCTGTCAAATCTTTAAAACAGACTGGTTTATTGCCTGCATTTATTCTCTACTTTGAATTACTTCTCCAAGAGCATATTTTCACATTAAATCTCGTGATTGTTTAGAGTTTCTAACCAATTCGAGTGGTATAAGGTTCTATATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGATCTGTGAGAATCTCTCTCTGTCACCCTTTGTATTCTCCTTTATGTTGCTATATCTATCCTTAGATTGTAAGCTCGTAAATAATTGGAACTATTGAATTCGGATGCTAAATATGAGTATCACTTGTATAATCAGGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCTTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGAGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAAATGGAAACAGCTCTTGAAACTATTAATGAACTGGTAAGTGTCTGTCTTGTTTCTACTCATCTTTTTGTTCACATTGTTATTATATCATATTACTATCATGTACTTAGTTCAATTGACTGTTGTTTTCGACTTCATAGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAGATGTAGAAATGATTTTGTATGTCAAGCATACAGTGACTAATCAAGAAATGGGAAAGAAATTCTAGCTGGCTGTTACTGAACTAACTGCTTGTGACAAAATCTTCCCTCTCCTTTCTTGTTGTATATACCTCATTTCCCACTTTTGTACCTTACAAGCTAAATTCAGAGGGAATTTTTTTCTGTCTCCGACATTTGTTGTAGAGATATCATATCAAACTTGAGTTGATCCCAAAGCTAAAAATGGTTGTACCATGCATGATtGAGAATGTAATGGCTATGAAAGAATGTCTACCTTGCTATTGCTGCTCAAACGCTAAGTGACTGAAATTTCTTTCTCATTATTTtCCTTTACTCAAA

mRNA sequence

CCATCACATTGCCACTCACCTCTGCTGTTCCCACCTCCTCCCCCATCAAATTTCACCACCATGGCCGCCGCCGCTGCCGCCACCGGAGCCTCCTTCTTCGCCACTTCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCGCAACCCCATCCACTCAAGTTTTGCCTATATTGTCCCGCTCTCTAGCCATTGAATCGCCTCTGCTCAGAGCTTCCTCGGAGAAGTGGCGGCCGGTTATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGACCGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTTCTATATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGATCTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCTTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGAGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAAATGGAAACAGCTCTTGAAACTATTAATGAACTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAGATGTAGAAATGATTTTGTATGTCAAGCATACAGTGACTAATCAAGAAATGGGAAAGAAATTCTAGCTGGCTGTTACTGAACTAACTGCTTGTGACAAAATCTTCCCTCTCCTTTCTTGTTGTATATACCTCATTTCCCACTTTTGTACCTTACAAGCTAAATTCAGAGGGAATTTTTTTCTGTCTCCGACATTTGTTGTAGAGATATCATATCAAACTTGAGTTGATCCCAAAGCTAAAAATGGTTGTACCATGCATGATTGAGAATGTAATGGCTATGAAAGAATGTCTACCTTGCTATTGCTGCTCAAACGCTAAGTGACTGAAATTTCTTTCTCATTATTTTCCTTTACTCAAA

Coding sequence (CDS)

ATGGCCGCCGCCGCTGCCGCCACCGGAGCCTCCTTCTTCGCCACTTCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCGCAACCCCATCCACTCAAGTTTTGCCTATATTGTCCCGCTCTCTAGCCATTGAATCGCCTCTGCTCAGAGCTTCCTCGGAGAAGTGGCGGCCGGTTATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGACCGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTTCTATATGACAGGAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGATCTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCTTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGAGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAAATGGAAACAGCTCTTGAAACTATTAATGAACTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAG

Protein sequence

MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKWRPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG*
Homology
[Close]
BLAST of Cucsa.255820 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-39
Identity = 88/211 (41.71%), Postives = 134/211 (63.51%), Query Frame = 1 

Query: 74  ETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 133
           E A++   EE +EE+ E      VE G  +LY GNLP+S+ SSQL+ I  + G    +E+
Sbjct: 88  EVALSAEEEEEIEEKEERVESESVEGG--RLYVGNLPFSMTSSQLSEIFAEAGTVANVEI 147

Query: 134 LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKE-------- 193
           +YDR T +SRGFAFVTM S+E+  + I   DGS   GR ++VNF + P+  E        
Sbjct: 148 VYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKI 207

Query: 194 ----PLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY 253
                 + ++ +KL+V NLSW++TS+ L  AF +    + A+VIYD  +G+SRG+GF+++
Sbjct: 208 RSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITF 267

Query: 254 STKSEMETALETINELELEGRVIRVSLAEGK 273
           S+   M +AL+T+NE+ELEGR +R+++A  K
Sbjct: 268 SSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296

[Close]
BLAST of Cucsa.255820 vs. Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 1 

Query: 69  AVVQGET----AVTVGVEEGVEEETEVEGGSPVESG--STKLYFGNLPYSVDSSQLAAIV 128
           AV++GE+    AV+ G E  V +E  VEGG          KL+ GNLPY VDS +LA I 
Sbjct: 16  AVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIF 75

Query: 129 QDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPK 188
              G+ E+ EV+Y+R T +SRGF FVTMS++E+  K +E L+G    GR L VN +  P+
Sbjct: 76  DAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA-APR 135

Query: 189 PKEPLYPETEY----KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 248
                 P  ++    +++VGNL W V +  L Q F E+G VV ARV+ D ETG+SRG+GF
Sbjct: 136 GSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGF 195

Query: 249 VSYSTKSEMETALETINELELEGRVIRVSLAE 271
           V+ S++SE+  A+  ++   L+GR +RV++AE
Sbjct: 196 VTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]
BLAST of Cucsa.255820 vs. Swiss-Prot
Match: CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38
Identity = 97/259 (37.45%), Postives = 144/259 (55.60%), Query Frame = 1 

Query: 20  SRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSE--KWRPVMIISAAVVQGETAV 79
           S   H  + SL + P    L + S++L   SP++   S+   W       A   +GE   
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNW-------AEEEEGEDGS 93

Query: 80  TVGVEEGVEEETEVEGGS--PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLY 139
             G    V+E  E E G   P      KL+ GNLPY VDS  LA + +  G  E+ EV+Y
Sbjct: 94  IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 153

Query: 140 DRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFS----DKPKPKEPLYPET 199
           +R+T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ ++P   + 
Sbjct: 154 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDA 213

Query: 200 EYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETAL 259
            ++++VGNL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  S ++E+  A+
Sbjct: 214 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 273

Query: 260 ETINELELEGRVIRVSLAE 271
             ++   LEGR I+V++AE
Sbjct: 274 AALDGQNLEGRAIKVNVAE 284

[Close]
BLAST of Cucsa.255820 vs. Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-37
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 1 

Query: 74  ETAVTVGVEEGVE-EETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIE 133
           E     G  + VE +E E E   P E    KL+ GNLPY VDS  LA + +  G+ E+ E
Sbjct: 109 EAVGDAGESDEVEADEEEEEFQEPPEDA--KLFVGNLPYDVDSEGLARLFEQAGVVEIAE 168

Query: 134 VLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK--PKPKEPLYP- 193
           V+Y+R+T +SRGF FVTMS++E+  K +E  +     GR+L VN + +   +P+ P    
Sbjct: 169 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTF 228

Query: 194 ETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMET 253
           E  Y+++VGN+ W +    L Q F E+G VV ARV+YD ETG+SRG+GFV+ ++++EM  
Sbjct: 229 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 288

Query: 254 ALETINELELEGRVIRVSLAEGK 273
           A+  ++   L+GR IRV++AE +
Sbjct: 289 AIANLDGQSLDGRTIRVNVAEDR 309

[Close]
BLAST of Cucsa.255820 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.0e-36
Identity = 95/245 (38.78%), Postives = 138/245 (56.33%), Query Frame = 1 

Query: 35  STQVLPI-LSRSLAIESPLLRASSEKWRPVMIISAAVVQGETAVTVGVEEGVEEETEV-E 94
           STQ+ PI LS SL     LL  +    +    +S       T V    E+G +  + V E
Sbjct: 27  STQLKPISLSSSLPT---LLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGE 86

Query: 95  GGSPVE----SGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFV 154
            G   E    S   KL+ GNLPY +DS  LA + Q  G+ E+ EV+Y+R T +SRGF FV
Sbjct: 87  AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 146

Query: 155 TMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEPLYPET---EYKLFVGNLSWSVT 214
           TMS++E+ +K +E        GR+L VN +     +    P T    Y+++VGN+ W + 
Sbjct: 147 TMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDID 206

Query: 215 SEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIR 271
              L Q F E+G VV ARV++D E+G+SRG+GFV+ S+++EM  A+  ++   L+GR IR
Sbjct: 207 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 266

[Close]
BLAST of Cucsa.255820 vs. TrEMBL
Match: A0A0A0L496_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 1.8e-149
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 

Query: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60
           MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW
Sbjct: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60

Query: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120
           RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA
Sbjct: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120

Query: 121 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 180
           IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK
Sbjct: 121 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 180

Query: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 240
           PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS
Sbjct: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 240

Query: 241 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 277
           YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG
Sbjct: 241 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]
BLAST of Cucsa.255820 vs. TrEMBL
Match: A0A067KAS6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12870 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.7e-91
Identity = 192/304 (63.16%), Postives = 226/304 (74.34%), Query Frame = 1 

Query: 2   AAAAAATGASFFATSLRG---SRSKHWLSDSLLATPSTQVLPI----LSRSLAIESPLLR 61
           AAAAAAT AS F+ S+     S SKH+LSDSLL  PST  L I    +SRS AIE P+  
Sbjct: 5   AAAAAATVASSFSPSIHNRKCSNSKHFLSDSLLKLPSTTRLAITASSISRSYAIE-PISS 64

Query: 62  ASSEKWRPVMIISAAVVQGETAVTVGVEE------------------GVEEETEVEGGSP 121
             +  WR V  +SAAV Q E A T  VEE                   VEEE + +  + 
Sbjct: 65  LVAVSWR-VPRVSAAVAQEEAAATAAVEEEEAAATAAVEEEKAAPTAAVEEEAQQQQVAG 124

Query: 122 VESG------STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTM 181
              G      +TKLYFGNLPY+VDS+QLA I+Q+YG  EL+EVLYDR+TG+SRGFAFVTM
Sbjct: 125 EGEGEAEIPLNTKLYFGNLPYNVDSAQLAGIIQEYGAPELVEVLYDRDTGRSRGFAFVTM 184

Query: 182 SSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILT 241
           SS+EDCN+VIENLDGS YMGRILRVNF+DKPKPKEPLYPETE+KLFVGNLSWSVTSE LT
Sbjct: 185 SSVEDCNRVIENLDGSQYMGRILRVNFADKPKPKEPLYPETEHKLFVGNLSWSVTSESLT 244

Query: 242 QAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAE 275
           +AFQEYG VVGARV+YDGETG+SRGYGFV YST+SEME A+E++N +ELEGR +RVSLA+
Sbjct: 245 RAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTRSEMENAIESLNGVELEGRAMRVSLAQ 304

[Close]
BLAST of Cucsa.255820 vs. TrEMBL
Match: D7SZP1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01930 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 5.6e-90
Identity = 186/282 (65.96%), Postives = 217/282 (76.95%), Query Frame = 1 

Query: 2   AAAAAATGASFFAT--SLRGSRSKHWLSDSLLATPSTQV--LPILSRSLAIESPLLRASS 61
           A AAAA G+SF  T  +L+ SRSKH  SD+LL   ST +  +P +S S  I+ PL    S
Sbjct: 3   ATAAAAIGSSFSTTMHTLKLSRSKHCPSDALLRIISTPIFKVPSISHSHVIDPPLSLPIS 62

Query: 62  EKWRPVMIISAAVVQGETAVTVGVEE----GVEEETEVEGGSPVESG-STKLYFGNLPYS 121
            KWR   I SAAV Q E A T  VEE    G EE  +V      ES  +TKLYFGNLPYS
Sbjct: 63  HKWRAPRI-SAAVAQEEAAATAPVEEEQQQGQEEGEQVLREEGAESPVNTKLYFGNLPYS 122

Query: 122 VDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRI 181
            DS+QLA I+Q+YG  EL+EVLY+R+TG+SRGFAFVTMSS+EDCN VIENLDGS Y GR 
Sbjct: 123 CDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRT 182

Query: 182 LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGK 241
           LRVNFSDKPKPK PLYPETEYKLFVGNLSWSVTSE L Q FQEYGNV+GARV+YDGETG+
Sbjct: 183 LRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGR 242

Query: 242 SRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQA 275
           SRGYGFV YSTK+EM+TALE++N +ELEGR IR+SLA+G+++
Sbjct: 243 SRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLAQGRRS 283

[Close]
BLAST of Cucsa.255820 vs. TrEMBL
Match: B9SQT1_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1217370 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.2e-89
Identity = 183/287 (63.76%), Postives = 221/287 (77.00%), Query Frame = 1 

Query: 1   MAAAAAATGASFFATS---LRGSRSKHWLSDSLLATPSTQVLPILS---RSLAIESPLLR 60
           MAA AAA  +S F+ S   L+ + SKH  SDSLL  PS   + + S   RS AIE   L 
Sbjct: 1   MAATAAAAISSSFSPSIHTLKCTNSKHLPSDSLLRLPSAHRVALASIYHRSYAIEP--LS 60

Query: 61  ASSEKWRPVM-IISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESG------STKLYFG 120
             +  WR V  ++SAAV Q E AVT  VEE  +++   EG +  E+       +TKLYFG
Sbjct: 61  QVAVSWRSVARLVSAAVAQEEAAVTAPVEEDEQQQVAEEGEAEPEAEPEAAPINTKLYFG 120

Query: 121 NLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSA 180
           NLPY+VDS+QLA I+QDYG  EL+EVLYDR+TG+SRGFAFVTMS++EDCN VIENLDGS 
Sbjct: 121 NLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIENLDGSQ 180

Query: 181 YMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYD 240
           +MGRILRVNFSDKPKPKEPLYPETE+KLFVGNLSWSVTSE L +AFQEYGN+VGARV+YD
Sbjct: 181 FMGRILRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYD 240

Query: 241 GETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQA 275
           GETG+SRGYGFV Y+T+SEME AL ++N +ELEGR +RVSLA+GK++
Sbjct: 241 GETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVSLAQGKKS 285

[Close]
BLAST of Cucsa.255820 vs. TrEMBL
Match: A0A061EMY4_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_021006 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.7e-86
Identity = 178/292 (60.96%), Postives = 218/292 (74.66%), Query Frame = 1 

Query: 2   AAAAAATGASFFAT--SLRGSRSKHWLSD-SLLATPSTQVLPILSRSLAIESPLLRASS- 61
           A AAAA G+SF  +  +L+  R K   +D S+L  PS++ +  +S S       L + + 
Sbjct: 3   ATAAAAVGSSFSPSIQTLKCMRFKQLTADHSVLRFPSSRTISSISHSFFTHELFLTSGTV 62

Query: 62  EKWRPVMIISAAVVQGETAVTVGVEEGVEEE------------TEVEGGSPVESGS---T 121
           +KWR V+ +SAAV Q E A T   EE + EE            TE +  +  E+ S   T
Sbjct: 63  QKWR-VLKVSAAVAQQEAAATAQEEESLAEEEVKEGEVAAEGETEAQAETAAEAESPVNT 122

Query: 122 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 181
           KLYFGNLPY+VDS+QLA I+Q+YG  EL+EVLYDR TGKSRGFAFVTMS++EDCN VIEN
Sbjct: 123 KLYFGNLPYNVDSAQLAGIIQEYGSPELVEVLYDRETGKSRGFAFVTMSTVEDCNTVIEN 182

Query: 182 LDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGA 241
           LDGS Y+GR LRVNFSDKP+P+EPLYPETE+KLFVGNLSWSVTSE LTQAFQEYG VVGA
Sbjct: 183 LDGSEYLGRTLRVNFSDKPRPREPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGTVVGA 242

Query: 242 RVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQA 275
           RV+YDGETG+SRGYGFVSYSTKSEME AL+++N +ELEGR IRVS A+G+++
Sbjct: 243 RVLYDGETGRSRGYGFVSYSTKSEMEAALQSLNGVELEGRAIRVSQAQGRRS 293

[Close]
BLAST of Cucsa.255820 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 270.8 bits (691), Expect = 9.4e-73
Identity = 136/227 (59.91%), Postives = 182/227 (80.18%), Query Frame = 1 

Query: 52  LLRASSEKWRPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGS----PVESGSTKLYFG 111
           LLR +    +P++I S +  +    ++  +   +EEE + +G S    P  + +TKLYFG
Sbjct: 31  LLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFG 90

Query: 112 NLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSA 171
           NLPY+VDS+ LA I+QD+   EL+EVLY+R+TG+SRGFAFVTMS++EDCN +I+NLDG+ 
Sbjct: 91  NLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTE 150

Query: 172 YMGRILRVNFSDKPKP-KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIY 231
           Y+GR L+VNF+DKPKP KEPLYPETE+KLFVGNLSW+VTSE L  AF+E G+VVGARV++
Sbjct: 151 YLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVF 210

Query: 232 DGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQ 274
           DG+TG+SRGYGFV YS+K+EMETALE+++  ELEGR IRV+LA+GK+
Sbjct: 211 DGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257

[Close]
BLAST of Cucsa.255820 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39
Identity = 97/259 (37.45%), Postives = 144/259 (55.60%), Query Frame = 1 

Query: 20  SRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSE--KWRPVMIISAAVVQGETAV 79
           S   H  + SL + P    L + S++L   SP++   S+   W       A   +GE   
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNW-------AEEEEGEDGS 93

Query: 80  TVGVEEGVEEETEVEGGS--PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLY 139
             G    V+E  E E G   P      KL+ GNLPY VDS  LA + +  G  E+ EV+Y
Sbjct: 94  IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 153

Query: 140 DRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFS----DKPKPKEPLYPET 199
           +R+T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ ++P   + 
Sbjct: 154 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDA 213

Query: 200 EYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETAL 259
            ++++VGNL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  S ++E+  A+
Sbjct: 214 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 273

Query: 260 ETINELELEGRVIRVSLAE 271
             ++   LEGR I+V++AE
Sbjct: 274 AALDGQNLEGRAIKVNVAE 284

[Close]
BLAST of Cucsa.255820 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-37
Identity = 79/217 (36.41%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 69  AVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIA 128
           A V+ E  V    +EG EE  E +  +       +LY GNLPY++ SS+L+ I  + G  
Sbjct: 83  ASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTV 142

Query: 129 ELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEP-- 188
             ++++YD+ T +SRGF FVTM SIE+  + ++  + S   GR ++VNF + P+  E   
Sbjct: 143 VDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEV 202

Query: 189 ----------LYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGY 248
                      Y ++ +K++ GNL W++TS+ L  AF +   V+GA+VIY+  TG+SRG+
Sbjct: 203 MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262

Query: 249 GFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQ 274
           GF+S+ +   +++AL T+N +E+EGR +R++LA  ++
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299


HSP 2 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1 

Query: 103 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 162
           K+Y GNL +++ S  L     D       +V+Y+RNTG+SRGF F++  S E+    +  
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279

Query: 163 LDGSAYMGRILRVNFS---DKPKPKEPLYPETE 193
           ++G    GR LR+N +   +KP    P   E E
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEGE 312

[Close]
BLAST of Cucsa.255820 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.4 bits (381), Expect = 8.3e-37
Identity = 85/221 (38.46%), Postives = 127/221 (57.47%), Query Frame = 1 

Query: 77  VTVGVEEGVEEETEVEGGSPVE---SGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 136
           V +  E  VEE+   +   P E   S   KL+ GNLP++VDS+QLA + +  G  E++EV
Sbjct: 63  VAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 122

Query: 137 LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEPLY---PE 196
           +YD+ TG+SRGF FVTMSS+ +     +  +G    GR LRVN    P  +E  +   P 
Sbjct: 123 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 182

Query: 197 TEY-------------------KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETG 256
           + +                   +++VGNLSW V    L   F E G VV ARVIYD ++G
Sbjct: 183 SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSG 242

Query: 257 KSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGK 273
           +S+G+GFV+Y +  E++ A+++++  +L+GR IRVS AE +
Sbjct: 243 RSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

[Close]
BLAST of Cucsa.255820 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36
Identity = 84/201 (41.79%), Postives = 120/201 (59.70%), Query Frame = 1 

Query: 81  VEEGVEEETEVEGGS-------PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 140
           V EG E E +V  G+       P  S   KL+ GNL Y V+S  LA + +  G  E+ EV
Sbjct: 122 VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV 181

Query: 141 LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFS----DKPKPKEPLYP 200
           +Y+R T +SRGF FVTMSS+++    +E  +     GR+L VN +     +P+    +Y 
Sbjct: 182 IYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVY- 241

Query: 201 ETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMET 260
           E  ++++VGNL W V +  L Q F E+G VV ARV+YD ETG+SRG+GFV+ S   E+  
Sbjct: 242 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 301

Query: 261 ALETINELELEGRVIRVSLAE 271
           A+  ++   LEGR IRV++AE
Sbjct: 302 AISALDGQNLEGRAIRVNVAE 321

[Close]
BLAST of Cucsa.255820 vs. NCBI nr
Match: gi|449432502|ref|XP_004134038.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 536.6 bits (1381), Expect = 2.6e-149
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 

Query: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60
           MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW
Sbjct: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60

Query: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120
           RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA
Sbjct: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120

Query: 121 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 180
           IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK
Sbjct: 121 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 180

Query: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 240
           PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS
Sbjct: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 240

Query: 241 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 277
           YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG
Sbjct: 241 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]
BLAST of Cucsa.255820 vs. NCBI nr
Match: gi|659076017|ref|XP_008438454.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 508.1 bits (1307), Expect = 1.0e-140
Identity = 259/276 (93.84%), Postives = 267/276 (96.74%), Query Frame = 1 

Query: 1   MAAAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKW 60
           MAAAAAATGASFF T LRGSRSKHW SDSLLATPSTQVLPILSRSL IESP LRASSE+W
Sbjct: 1   MAAAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERW 60

Query: 61  RPVMIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120
           RPV+IISAAVVQGETAV VGVEEGVEEET VEGGSPVESGSTKLYFGNLPYSVDSSQLAA
Sbjct: 61  RPVLIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGSTKLYFGNLPYSVDSSQLAA 120

Query: 121 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 180
           IVQD+G+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGRILRVNFSDK
Sbjct: 121 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 180

Query: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 240
           PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIY+GETGKSRGYGFVS
Sbjct: 181 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVS 240

Query: 241 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 277
           YSTKSEMETALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 241 YSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 276

[Close]
BLAST of Cucsa.255820 vs. NCBI nr
Match: gi|802633660|ref|XP_012077603.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas])

HSP 1 Score: 344.0 bits (881), Expect = 2.5e-91
Identity = 192/304 (63.16%), Postives = 226/304 (74.34%), Query Frame = 1 

Query: 2   AAAAAATGASFFATSLRG---SRSKHWLSDSLLATPSTQVLPI----LSRSLAIESPLLR 61
           AAAAAAT AS F+ S+     S SKH+LSDSLL  PST  L I    +SRS AIE P+  
Sbjct: 5   AAAAAATVASSFSPSIHNRKCSNSKHFLSDSLLKLPSTTRLAITASSISRSYAIE-PISS 64

Query: 62  ASSEKWRPVMIISAAVVQGETAVTVGVEE------------------GVEEETEVEGGSP 121
             +  WR V  +SAAV Q E A T  VEE                   VEEE + +  + 
Sbjct: 65  LVAVSWR-VPRVSAAVAQEEAAATAAVEEEEAAATAAVEEEKAAPTAAVEEEAQQQQVAG 124

Query: 122 VESG------STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTM 181
              G      +TKLYFGNLPY+VDS+QLA I+Q+YG  EL+EVLYDR+TG+SRGFAFVTM
Sbjct: 125 EGEGEAEIPLNTKLYFGNLPYNVDSAQLAGIIQEYGAPELVEVLYDRDTGRSRGFAFVTM 184

Query: 182 SSIEDCNKVIENLDGSAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILT 241
           SS+EDCN+VIENLDGS YMGRILRVNF+DKPKPKEPLYPETE+KLFVGNLSWSVTSE LT
Sbjct: 185 SSVEDCNRVIENLDGSQYMGRILRVNFADKPKPKEPLYPETEHKLFVGNLSWSVTSESLT 244

Query: 242 QAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAE 275
           +AFQEYG VVGARV+YDGETG+SRGYGFV YST+SEME A+E++N +ELEGR +RVSLA+
Sbjct: 245 RAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTRSEMENAIESLNGVELEGRAMRVSLAQ 304

[Close]
BLAST of Cucsa.255820 vs. NCBI nr
Match: gi|731389898|ref|XP_010650156.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Vitis vinifera])

HSP 1 Score: 339.0 bits (868), Expect = 8.0e-90
Identity = 186/282 (65.96%), Postives = 217/282 (76.95%), Query Frame = 1 

Query: 2   AAAAAATGASFFAT--SLRGSRSKHWLSDSLLATPSTQV--LPILSRSLAIESPLLRASS 61
           A AAAA G+SF  T  +L+ SRSKH  SD+LL   ST +  +P +S S  I+ PL    S
Sbjct: 3   ATAAAAIGSSFSTTMHTLKLSRSKHCPSDALLRIISTPIFKVPSISHSHVIDPPLSLPIS 62

Query: 62  EKWRPVMIISAAVVQGETAVTVGVEE----GVEEETEVEGGSPVESG-STKLYFGNLPYS 121
            KWR   I SAAV Q E A T  VEE    G EE  +V      ES  +TKLYFGNLPYS
Sbjct: 63  HKWRAPRI-SAAVAQEEAAATAPVEEEQQQGQEEGEQVLREEGAESPVNTKLYFGNLPYS 122

Query: 122 VDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRI 181
            DS+QLA I+Q+YG  EL+EVLY+R+TG+SRGFAFVTMSS+EDCN VIENLDGS Y GR 
Sbjct: 123 CDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRT 182

Query: 182 LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGK 241
           LRVNFSDKPKPK PLYPETEYKLFVGNLSWSVTSE L Q FQEYGNV+GARV+YDGETG+
Sbjct: 183 LRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGR 242

Query: 242 SRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQA 275
           SRGYGFV YSTK+EM+TALE++N +ELEGR IR+SLA+G+++
Sbjct: 243 SRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLAQGRRS 283

[Close]
BLAST of Cucsa.255820 vs. NCBI nr
Match: gi|255574887|ref|XP_002528350.1| (PREDICTED: 30 kDa ribonucleoprotein, chloroplastic [Ricinus communis])

HSP 1 Score: 337.8 bits (865), Expect = 1.8e-89
Identity = 183/287 (63.76%), Postives = 221/287 (77.00%), Query Frame = 1 

Query: 1   MAAAAAATGASFFATS---LRGSRSKHWLSDSLLATPSTQVLPILS---RSLAIESPLLR 60
           MAA AAA  +S F+ S   L+ + SKH  SDSLL  PS   + + S   RS AIE   L 
Sbjct: 1   MAATAAAAISSSFSPSIHTLKCTNSKHLPSDSLLRLPSAHRVALASIYHRSYAIEP--LS 60

Query: 61  ASSEKWRPVM-IISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESG------STKLYFG 120
             +  WR V  ++SAAV Q E AVT  VEE  +++   EG +  E+       +TKLYFG
Sbjct: 61  QVAVSWRSVARLVSAAVAQEEAAVTAPVEEDEQQQVAEEGEAEPEAEPEAAPINTKLYFG 120

Query: 121 NLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSA 180
           NLPY+VDS+QLA I+QDYG  EL+EVLYDR+TG+SRGFAFVTMS++EDCN VIENLDGS 
Sbjct: 121 NLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIENLDGSQ 180

Query: 181 YMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYD 240
           +MGRILRVNFSDKPKPKEPLYPETE+KLFVGNLSWSVTSE L +AFQEYGN+VGARV+YD
Sbjct: 181 FMGRILRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYD 240

Query: 241 GETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQA 275
           GETG+SRGYGFV Y+T+SEME AL ++N +ELEGR +RVSLA+GK++
Sbjct: 241 GETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVSLAQGKKS 285

The following BLAST results are available for this feature:
BLAST of Cucsa.255820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ROC5_NICSY1.3e-3941.7133 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
ROC1_SPIOL1.1e-3843.4028 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1[more]
CP31B_ARATH2.4e-3837.45RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 S... [more]
ROC4_NICSY2.1e-3741.8731 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
ROC3_NICSY3.0e-3638.7828 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
BLAST of Cucsa.255820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L496_CUCSA1.8e-149100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134590 PE=4 SV=1[more]
A0A067KAS6_JATCU1.7e-9163.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12870 PE=4 SV=1[more]
D7SZP1_VITVI5.6e-9065.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01930 PE=4 SV=... [more]
B9SQT1_RICCO1.2e-8963.76Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1217370 PE=... [more]
A0A061EMY4_THECC3.7e-8660.96RNA-binding family protein OS=Theobroma cacao GN=TCM_021006 PE=4 SV=1[more]
BLAST of Cucsa.255820 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60000.19.4e-7359.91 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G50250.11.4e-3937.45 chloroplast RNA-binding protein 31B[more]
AT3G52380.12.2e-3736.41 chloroplast RNA-binding protein 33[more]
AT2G37220.18.3e-3738.46 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G24770.11.1e-3641.79 31-kDa RNA binding protein[more]
BLAST of Cucsa.255820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432502|ref|XP_004134038.1|2.6e-149100.00PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|659076017|ref|XP_008438454.1|1.0e-14093.84PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo][more]
gi|802633660|ref|XP_012077603.1|2.5e-9163.16PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas][more]
gi|731389898|ref|XP_010650156.1|8.0e-9065.96PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Vitis vinifera][more]
gi|255574887|ref|XP_002528350.1|1.8e-8963.76PREDICTED: 30 kDa ribonucleoprotein, chloroplastic [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.255820.1Cucsa.255820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 104..173
score: 3.2E-15coord: 195..265
score: 1.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 103..176
score: 6.5E-21coord: 194..267
score: 2.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 102..180
score: 17.234coord: 193..271
score: 19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 95..182
score: 3.7E-24coord: 183..274
score: 3.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 188..273
score: 4.84E-28coord: 97..185
score: 4.7
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 82..273
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.255820Cla021482Watermelon (97103) v1cgywmB479
Cucsa.255820Csa3G134590Cucumber (Chinese Long) v2cgycuB366
Cucsa.255820MELO3C006374Melon (DHL92) v3.5.1cgymeB439
Cucsa.255820ClCG05G003980Watermelon (Charleston Gray)cgywcgB451
Cucsa.255820CSPI03G11540Wild cucumber (PI 183967)cgycpiB383
Cucsa.255820CmaCh14G018440Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.255820CmaCh06G012890Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.255820CmoCh14G018870Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.255820CmoCh06G012970Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.255820Lsi05G017740Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.255820Cp4.1LG03g09660Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.255820Cp4.1LG08g03180Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.255820MELO3C006373.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.255820CsaV3_3G011660Cucumber (Chinese Long) v3cgycucB387
Cucsa.255820Cla97C05G084600Watermelon (97103) v2cgywmbB452
Cucsa.255820Bhi01G000470Wax gourdcgywgoB517
Cucsa.255820Carg16534Silver-seed gourdcarcgyB0276
Cucsa.255820Carg06251Silver-seed gourdcarcgyB1077
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.255820Melon (DHL92) v3.6.1cgymedB424
Cucsa.255820Melon (DHL92) v3.6.1cgymedB428
Cucsa.255820Melon (DHL92) v3.6.1cgymedB429
Cucsa.255820Silver-seed gourdcarcgyB0269
Cucsa.255820Silver-seed gourdcarcgyB0847
Cucsa.255820Silver-seed gourdcarcgyB0887
Cucsa.255820Silver-seed gourdcarcgyB1190
Cucsa.255820Cucumber (Chinese Long) v3cgycucB384
Cucsa.255820Cucumber (Chinese Long) v3cgycucB386
Cucsa.255820Watermelon (97103) v2cgywmbB453
Cucsa.255820Watermelon (97103) v2cgywmbB456
Cucsa.255820Wax gourdcgywgoB525
Cucsa.255820Wax gourdcgywgoB510
Cucsa.255820Wax gourdcgywgoB528
Cucsa.255820Cucumber (Gy14) v1cgycgyB090
Cucsa.255820Cucumber (Gy14) v1cgycgyB129
Cucsa.255820Cucumber (Gy14) v1cgycgyB133
Cucsa.255820Cucurbita maxima (Rimu)cgycmaB0715
Cucsa.255820Cucurbita maxima (Rimu)cgycmaB0717
Cucsa.255820Cucurbita maxima (Rimu)cgycmaB0719
Cucsa.255820Cucurbita maxima (Rimu)cgycmaB0732
Cucsa.255820Cucurbita moschata (Rifu)cgycmoB0708
Cucsa.255820Cucurbita moschata (Rifu)cgycmoB0710
Cucsa.255820Cucurbita moschata (Rifu)cgycmoB0713
Cucsa.255820Cucurbita moschata (Rifu)cgycmoB0721
Cucsa.255820Wild cucumber (PI 183967)cgycpiB378
Cucsa.255820Wild cucumber (PI 183967)cgycpiB381
Cucsa.255820Cucumber (Chinese Long) v2cgycuB362
Cucsa.255820Cucumber (Chinese Long) v2cgycuB365
Cucsa.255820Melon (DHL92) v3.5.1cgymeB433
Cucsa.255820Melon (DHL92) v3.5.1cgymeB434
Cucsa.255820Watermelon (Charleston Gray)cgywcgB452
Cucsa.255820Watermelon (Charleston Gray)cgywcgB455
Cucsa.255820Watermelon (Charleston Gray)cgywcgB457
Cucsa.255820Watermelon (97103) v1cgywmB475
Cucsa.255820Watermelon (97103) v1cgywmB483
Cucsa.255820Cucurbita pepo (Zucchini)cgycpeB0670
Cucsa.255820Cucurbita pepo (Zucchini)cgycpeB0675
Cucsa.255820Cucurbita pepo (Zucchini)cgycpeB0683
Cucsa.255820Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.255820Bottle gourd (USVL1VR-Ls)cgylsiB417