Cucsa.251170 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.251170
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMADS-box transcription factor
Locationscaffold02229 : 283154 .. 284037 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGAGTAAATTAAAATACTACACTATTTTTCATTCCTTCTTCTTCTTCTTCTTCTTCTTCTAATTTCTTTTATTTATGGCAATTTATCATCACTTTCATTCATCAATAATCAGCATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGGTGAACAATTAGGAGATCCAAACTATTTATGTATTATTTACTGAGTTATCTTCAGATTGACTAGTAAGATATAGGGTTAATTGGTTCAAAATAAATATTTTCTTTTTATTTTTTGGAATTTGTTGGTGATGATATGATGATATACATGTTGGGAATGCAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGTTAATTTAATTAGATTAGTTAAATGAAGACCTTGTTTTTTTAAAAAATGATCTTGATGTGTGGTTTAATTTTGTATGAATTTTGAAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACAAGCTAGACAGCGAAAGGTAATTCAAGATAAGGATTGGTTTTTTCTATTTTCGTTTAATTTTATTCTTTTTATTAGGTTGGAATCGCTAAATTCATAACATTAATAAGGATGATTTCTCTATGA

mRNA sequence

ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACAAGCTAGACAGCGAAAGGTTGGAATCGCTAAATTCATAACATTAATAAGGATGATTTCTCTATGA

Coding sequence (CDS)

ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACAAGCTAGACAGCGAAAGGTTGGAATCGCTAAATTCATAACATTAATAAGGATGATTTCTCTATGA

Protein sequence

MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLKELHNLEKQLDKTLSQARQRKVGIAKFITLIRMISL*
Homology
[Close]
BLAST of Cucsa.251170 vs. Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.7e-44
Identity = 92/141 (65.25%), Postives = 113/141 (80.14%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIEN++NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMNKILERYHQQCYTSGSTTN-LDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTL 120
            + K LERY   CY +  + N L E+     E+SKL+AK+E+LQR+ R+ LGE+L PL++
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 121 KELHNLEKQLDKTLSQARQRK 141
           KEL  LEKQL+  LSQARQRK
Sbjct: 121 KELQQLEKQLECALSQARQRK 141

[Close]
BLAST of Cucsa.251170 vs. Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 5.4e-43
Identity = 93/146 (63.70%), Postives = 116/146 (79.45%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIEN++NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMNKILERYHQQCYTS-GSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
            +NK LE+Y+  CY + GS + L   + Q   +E+S+L+ K E LQRS R+ LGE+L PL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 121 TLKELHNLEKQLDKTLSQARQRKVGI 144
           ++KEL  LEKQL+ +LSQARQRK  I
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQI 146

[Close]
BLAST of Cucsa.251170 vs. Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-39
Identity = 84/145 (57.93%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V ++RIEN++NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
            +   +ERY+ +CY    + N  E   Q   +EV+KL++KYESL R++RN LGE+L  + 
Sbjct: 61  GIESTIERYN-RCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 120

Query: 121 LKELHNLEKQLDKTLSQARQRKVGI 144
           +KEL  LE+QL+  L+  RQRK  +
Sbjct: 121 VKELQALERQLEAALTATRQRKTQV 144

[Close]
BLAST of Cucsa.251170 vs. Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 88/142 (61.97%), Postives = 106/142 (74.65%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIEN++NRQVTF+KRRNGLLKKA ELSVLCD +VALI+FS RGKL+EF ST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  D-MNKILERYHQQCYTSGSTTN-LDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
             MNK LERY +  Y S  T+    E++   +E  KL+AK + LQRSHRN LGE+L  L+
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 LKELHNLEKQLDKTLSQARQRK 141
            KEL  LE QLDK+L Q R  K
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIK 142

[Close]
BLAST of Cucsa.251170 vs. Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-37
Identity = 86/145 (59.31%), Postives = 106/145 (73.10%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRG+V L+RIEN++NRQVTF+KRRNGLLKKA ELSVLCD +VALIIFS RGKL+EF  S
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  TDMNKILERYHQQCYTSGSTTNLDESDV----QIEEVSKLRAKYESLQRSHRNFLGEELE 120
           + M K LERY Q+C      TN+   +       +E  KL+A+YE+LQRS RN LGE+L 
Sbjct: 61  SSMLKTLERY-QKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query: 121 PLTLKELHNLEKQLDKTLSQARQRK 141
           PL  KEL +LE+QLD +L Q R  +
Sbjct: 121 PLNSKELESLERQLDMSLKQIRSTR 144

[Close]
BLAST of Cucsa.251170 vs. TrEMBL
Match: B9ICZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14010g PE=4 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 8.6e-48
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+RGKLFEF  S
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCSS 60

Query: 61  TDMNKILERYHQQCY-TSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
           TD+NK L+RY Q CY T G+    + S    +EVS+LRA+ ESLQRS RNFLGEELEPLT
Sbjct: 61  TDINKTLQRYQQCCYSTEGTNIPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLT 120

Query: 121 LKELHNLEKQLDKTLSQARQRKV 142
           +KEL  +EKQLDKTLS+ARQRKV
Sbjct: 121 VKELKKIEKQLDKTLSEARQRKV 143

[Close]
BLAST of Cucsa.251170 vs. TrEMBL
Match: B9I4G9_POPTR (Apetala1 family protein OS=Populus trichocarpa GN=POPTR_0012s14020g PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-47
Identity = 101/141 (71.63%), Postives = 117/141 (82.98%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+ GKLFEF S 
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFSSI 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQI-EEVSKLRAKYESLQRSHRNFLGEELEPLTL 120
           DMN IL+RY Q CY++  T   +E    + +EVS+LRAK E+LQRS RNFLGE+LEPL  
Sbjct: 61  DMNSILQRYRQCCYSTQDTNIPEEGSHNLYQEVSRLRAKCETLQRSQRNFLGEDLEPLAF 120

Query: 121 KELHNLEKQLDKTLSQARQRK 141
           KEL  +EKQLDKTLSQARQRK
Sbjct: 121 KELEKIEKQLDKTLSQARQRK 141

[Close]
BLAST of Cucsa.251170 vs. TrEMBL
Match: A0A0R7B358_9ROSA (MADS-box protein MADS1 OS=Prunus pseudocerasus PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-47
Identity = 102/140 (72.86%), Postives = 116/140 (82.86%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+VVLERIEN++NRQVTFSKRRNGLLKKA ELSVLCD  VALII S+RGKL+EFGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSRGKLYEFGST 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120
           D+NKILERY Q CY+       +E+    +EVSKL+ KYESLQ S R+FLGE+LE L LK
Sbjct: 61  DVNKILERYRQCCYSLQGNVAENETQNLYQEVSKLKVKYESLQLSQRHFLGEDLEKLRLK 120

Query: 121 ELHNLEKQLDKTLSQARQRK 141
           EL NLE QLDKTLS+ARQRK
Sbjct: 121 ELVNLENQLDKTLSKARQRK 140

[Close]
BLAST of Cucsa.251170 vs. TrEMBL
Match: U5FXL4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14020g PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-47
Identity = 101/141 (71.63%), Postives = 117/141 (82.98%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+ GKLFEF S 
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFSSI 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQI-EEVSKLRAKYESLQRSHRNFLGEELEPLTL 120
           DMN IL+RY Q CY++  T   +E    + +EVS+LRAK E+LQRS RNFLGE+LEPL  
Sbjct: 61  DMNSILQRYRQCCYSTQDTNIPEEGSHNLYQEVSRLRAKCETLQRSQRNFLGEDLEPLAF 120

Query: 121 KELHNLEKQLDKTLSQARQRK 141
           KEL  +EKQLDKTLSQARQRK
Sbjct: 121 KELEKIEKQLDKTLSQARQRK 141

[Close]
BLAST of Cucsa.251170 vs. TrEMBL
Match: A0A0B4U5D5_FICCA (MADS-box protein OS=Ficus carica GN=MADS1 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+VVLERIEN++NRQV+FSKRRNGLLKKA ELSVLCD +V LIIFS+RGKL+EFGST
Sbjct: 1   MGRGRVVLERIENKINRQVSFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFGST 60

Query: 61  DMNKILERYHQQCYTS-GSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
           D+N ILERY Q CY+S  +  N+ +   Q  + E+ KL+ KYESLQR  R+FLGE LE L
Sbjct: 61  DVNLILERYRQFCYSSQDNNINVGDDQAQDLVREIPKLKLKYESLQREERHFLGENLEEL 120

Query: 121 TLKELHNLEKQLDKTLSQARQRK 141
            LKEL NLEKQL+KTLS ARQRK
Sbjct: 121 NLKELQNLEKQLEKTLSHARQRK 143

[Close]
BLAST of Cucsa.251170 vs. TAIR10
Match: AT2G45650.1 (AT2G45650.1 AGAMOUS-like 6)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-40
Identity = 84/145 (57.93%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V ++RIEN++NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
            +   +ERY+ +CY    + N  E   Q   +EV+KL++KYESL R++RN LGE+L  + 
Sbjct: 61  GIESTIERYN-RCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 120

Query: 121 LKELHNLEKQLDKTLSQARQRKVGI 144
           +KEL  LE+QL+  L+  RQRK  +
Sbjct: 121 VKELQALERQLEAALTATRQRKTQV 144

[Close]
BLAST of Cucsa.251170 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-37
Identity = 83/143 (58.04%), Postives = 103/143 (72.03%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRG+V L+RIEN++NRQVTF+KRRNGLLKKA ELSVLCD +VALIIFS RGKL+EF  S
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  TDMNKILERYHQQCYTSGSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
           ++M K L+RY +  Y S    N    +++    E  KL+ +YE+LQR  RN LGE+L PL
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 TLKELHNLEKQLDKTLSQARQRK 141
             KEL  LE+QLD +L Q R  K
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIK 143

[Close]
BLAST of Cucsa.251170 vs. TAIR10
Match: AT3G02310.1 (AT3G02310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-37
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIEN++NRQVTF+KRRNGLLKKA ELSVLCD +V+LI+FS RGKL+EF ST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  -DMNKILERYHQQCYTSGSTTNLDESDVQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
            +M K LERY +  Y S    N    +++    E  KL+ +YE+LQR  RN LGE+L PL
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 TLKELHNLEKQLDKTLSQAR 138
             KEL  LE+QLD +L Q R
Sbjct: 121 NSKELEQLERQLDGSLKQVR 140

[Close]
BLAST of Cucsa.251170 vs. TAIR10
Match: AT3G61120.1 (AT3G61120.1 AGAMOUS-like 13)

HSP 1 Score: 151.4 bits (381), Expect = 4.7e-37
Identity = 75/143 (52.45%), Postives = 107/143 (74.83%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKV ++RIEN++ RQVTFSKR++GLLKKA ELSVLCD +V+LIIFST GKL+EF + 
Sbjct: 1   MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120
            + + +ERY++          L+++    +EV+KL+ KYESL R+HRN +GE+LE +++K
Sbjct: 61  GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

Query: 121 ELHNLEKQLDKTLSQARQRKVGI 144
           EL  LE+QL+  LS  R++K  +
Sbjct: 121 ELQTLERQLEGALSATRKQKTQV 143

[Close]
BLAST of Cucsa.251170 vs. TAIR10
Match: AT1G26310.1 (AT1G26310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 150.6 bits (379), Expect = 8.0e-37
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIEN++NRQVTFSKRR GLLKKA E+SVLCD +V+LI+FS +GKLFE+ S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-MNKILERYHQQCYTSGSTTNLDESDVQIE-----EVSKLRAKYESLQRSHRNFLGEEL 120
             M K+LERY +  Y        D S V  +     E S+L+AK E L+R+ R++LGEEL
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPD-SHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEEL 120

Query: 121 EPLTLKELHNLEKQLDKTLSQARQRK 141
           EP++LK+L NLE+QL+  L   R RK
Sbjct: 121 EPMSLKDLQNLEQQLETALKHIRSRK 145

[Close]
BLAST of Cucsa.251170 vs. NCBI nr
Match: gi|778679422|ref|XP_011651126.1| (PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 6.1e-71
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120
           DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120

Query: 121 ELHNLEKQLDKTLSQARQRKVGI 144
           ELHNLEKQLDKTLSQARQRK  I
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEI 143

[Close]
BLAST of Cucsa.251170 vs. NCBI nr
Match: gi|659077324|ref|XP_008439145.1| (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120
           DMNKILERYHQQCYTSGSTTNLDESD+QIEEVSKLRAKYESLQRS+RNFLGEELEPL+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

Query: 121 ELHNLEKQLDKTLSQARQRKVGI 144
           ELHNLEKQLDKTLSQARQRK  I
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEI 143

[Close]
BLAST of Cucsa.251170 vs. NCBI nr
Match: gi|743896757|ref|XP_011041648.1| (PREDICTED: MADS-box transcription factor 6-like isoform X1 [Populus euphratica])

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-48
Identity = 105/142 (73.94%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+RGKLFEF  S
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCSS 60

Query: 61  TDMNKILERYHQQCYTSGSTTNLDE-SDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
           TD+NK L+RY Q CY++  T N +E S    +EVS+LRA+ ESLQRS RNFLGEELEPLT
Sbjct: 61  TDINKTLQRYQQCCYSTEGTNNPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLT 120

Query: 121 LKELHNLEKQLDKTLSQARQRK 141
           +KEL  +EKQLDKTLS+ARQRK
Sbjct: 121 VKELKKIEKQLDKTLSEARQRK 142

[Close]
BLAST of Cucsa.251170 vs. NCBI nr
Match: gi|743896759|ref|XP_011041649.1| (PREDICTED: MADS-box transcription factor 6-like isoform X2 [Populus euphratica])

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-48
Identity = 105/142 (73.94%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+RGKLFEF  S
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCSS 60

Query: 61  TDMNKILERYHQQCYTSGSTTNLDE-SDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
           TD+NK L+RY Q CY++  T N +E S    +EVS+LRA+ ESLQRS RNFLGEELEPLT
Sbjct: 61  TDINKTLQRYQQCCYSTEGTNNPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLT 120

Query: 121 LKELHNLEKQLDKTLSQARQRK 141
           +KEL  +EKQLDKTLS+ARQRK
Sbjct: 121 VKELKKIEKQLDKTLSEARQRK 142

[Close]
BLAST of Cucsa.251170 vs. NCBI nr
Match: gi|566207511|ref|XP_002321868.2| (hypothetical protein POPTR_0015s14010g [Populus trichocarpa])

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1 

Query: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRGKVVLERIEN+++RQVTFSKRRNGLLKKA ELS+LCD +VALIIFS+RGKLFEF  S
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCSS 60

Query: 61  TDMNKILERYHQQCY-TSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLT 120
           TD+NK L+RY Q CY T G+    + S    +EVS+LRA+ ESLQRS RNFLGEELEPLT
Sbjct: 61  TDINKTLQRYQQCCYSTEGTNIPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLT 120

Query: 121 LKELHNLEKQLDKTLSQARQRKV 142
           +KEL  +EKQLDKTLS+ARQRKV
Sbjct: 121 VKELKKIEKQLDKTLSEARQRKV 143

The following BLAST results are available for this feature:
BLAST of Cucsa.251170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MADS6_ORYSJ3.7e-4465.25MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV... [more]
MAD17_ORYSJ5.4e-4363.70MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 ... [more]
AGL6_ARATH2.8e-3957.93Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2[more]
CMB1_DIACA2.3e-3861.97MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1[more]
AGL9_PETHY2.0e-3759.31Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2[more]
BLAST of Cucsa.251170 vs. TrEMBL
Match NameE-valueIdentityDescription
B9ICZ9_POPTR8.6e-4873.43Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14010g PE=4 SV=2[more]
B9I4G9_POPTR4.3e-4771.63Apetala1 family protein OS=Populus trichocarpa GN=POPTR_0012s14020g PE=4 SV=1[more]
A0A0R7B358_9ROSA4.3e-4772.86MADS-box protein MADS1 OS=Prunus pseudocerasus PE=2 SV=1[more]
U5FXL4_POPTR4.3e-4771.63Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14020g PE=4 SV=1[more]
A0A0B4U5D5_FICCA2.8e-4669.93MADS-box protein OS=Ficus carica GN=MADS1 PE=2 SV=1[more]
BLAST of Cucsa.251170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45650.11.6e-4057.93 AGAMOUS-like 6[more]
AT5G15800.21.2e-3758.04 K-box region and MADS-box transcription factor family protein [more]
AT3G02310.12.1e-3758.57 K-box region and MADS-box transcription factor family protein [more]
AT3G61120.14.7e-3752.45 AGAMOUS-like 13[more]
AT1G26310.18.0e-3755.48 K-box region and MADS-box transcription factor family protein [more]
BLAST of Cucsa.251170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679422|ref|XP_011651126.1|6.1e-7198.60PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus][more]
gi|659077324|ref|XP_008439145.1|1.2e-6996.50PREDICTED: MADS-box transcription factor 17-like [Cucumis melo][more]
gi|743896757|ref|XP_011041648.1|3.3e-4873.94PREDICTED: MADS-box transcription factor 6-like isoform X1 [Populus euphratica][more]
gi|743896759|ref|XP_011041649.1|3.3e-4873.94PREDICTED: MADS-box transcription factor 6-like isoform X2 [Populus euphratica][more]
gi|566207511|ref|XP_002321868.2|1.2e-4773.43hypothetical protein POPTR_0015s14010g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.251170.1Cucsa.251170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 3.0E-29coord: 23..38
score: 3.0E-29coord: 38..59
score: 3.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
score: 9.5
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 6.2
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 30
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..87
score: 2.35
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 89..141
score: 1.4
IPR002487Transcription factor, K-boxPROFILEPS51297K_BOXcoord: 85..155
score: 10
NoneNo IPR availableunknownCoilCoilcoord: 119..139
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..140
score: 4.1
NoneNo IPR availablePANTHERPTHR11945:SF165SUBFAMILY NOT NAMEDcoord: 2..140
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.251170Csa3G179130Cucumber (Chinese Long) v2cgycuB366
Cucsa.251170Csa6G076710Cucumber (Chinese Long) v2cgycuB372
Cucsa.251170MELO3C022516Melon (DHL92) v3.5.1cgymeB431
Cucsa.251170CSPI03G16420Wild cucumber (PI 183967)cgycpiB383
Cucsa.251170CSPI06G05700Wild cucumber (PI 183967)cgycpiB391
Cucsa.251170CmoCh16G001650Cucurbita moschata (Rifu)cgycmoB0704
Cucsa.251170Lsi05G012800Bottle gourd (USVL1VR-Ls)cgylsiB416
Cucsa.251170MELO3C022516.2Melon (DHL92) v3.6.1cgymedB426
Cucsa.251170MELO3C031794.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.251170CsaV3_3G016620Cucumber (Chinese Long) v3cgycucB387
Cucsa.251170Cla97C06G109500Watermelon (97103) v2cgywmbB454
Cucsa.251170Bhi01G001019Wax gourdcgywgoB516
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.251170Cucsa.362970Cucumber (Gy14) v1cgycgyB132
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.251170Cucumber (Gy14) v1cgycgyB126
Cucsa.251170Cucurbita maxima (Rimu)cgycmaB0710
Cucsa.251170Cucurbita maxima (Rimu)cgycmaB0711
Cucsa.251170Cucurbita maxima (Rimu)cgycmaB0716
Cucsa.251170Cucurbita maxima (Rimu)cgycmaB0718
Cucsa.251170Cucurbita moschata (Rifu)cgycmoB0702
Cucsa.251170Cucurbita moschata (Rifu)cgycmoB0709
Cucsa.251170Cucurbita moschata (Rifu)cgycmoB0711
Cucsa.251170Wild cucumber (PI 183967)cgycpiB386
Cucsa.251170Wild cucumber (PI 183967)cgycpiB388
Cucsa.251170Cucumber (Chinese Long) v2cgycuB368
Cucsa.251170Cucumber (Chinese Long) v2cgycuB370
Cucsa.251170Melon (DHL92) v3.5.1cgymeB428
Cucsa.251170Melon (DHL92) v3.5.1cgymeB439
Cucsa.251170Watermelon (Charleston Gray)cgywcgB445
Cucsa.251170Watermelon (Charleston Gray)cgywcgB447
Cucsa.251170Watermelon (Charleston Gray)cgywcgB451
Cucsa.251170Watermelon (97103) v1cgywmB479
Cucsa.251170Watermelon (97103) v1cgywmB480
Cucsa.251170Cucurbita pepo (Zucchini)cgycpeB0668
Cucsa.251170Cucurbita pepo (Zucchini)cgycpeB0673
Cucsa.251170Cucurbita pepo (Zucchini)cgycpeB0684
Cucsa.251170Cucurbita pepo (Zucchini)cgycpeB0686
Cucsa.251170Bottle gourd (USVL1VR-Ls)cgylsiB411
Cucsa.251170Melon (DHL92) v3.6.1cgymedB422
Cucsa.251170Silver-seed gourdcarcgyB0006
Cucsa.251170Silver-seed gourdcarcgyB0993
Cucsa.251170Silver-seed gourdcarcgyB1042
Cucsa.251170Silver-seed gourdcarcgyB1053
Cucsa.251170Cucumber (Chinese Long) v3cgycucB392
Cucsa.251170Cucumber (Chinese Long) v3cgycucB395
Cucsa.251170Watermelon (97103) v2cgywmbB444
Cucsa.251170Watermelon (97103) v2cgywmbB452
Cucsa.251170Wax gourdcgywgoB509