Csa3G179130 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G179130
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 12241004 .. 12245048 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGGTGAACAATTAGGAGATCCAAACTATTTATGTATTATTTACTGAGTTATCTTCAGATTGACTAGTAAGATATAGGGTTAATTGGTTCAAAATAAATATTTTCTTTTTATTTTTTGGAATTTGTTGGTGATGATATGATGATATACATGTTGGGAATGCAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGTTAATTTAATTAGATTAGTTAAATGAAGACCTTGTTTTTTTAAAAAATGATCTTGATGTGTGGTTTAATTTTGTATGAATTTTGAAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACAAGCTAGACAGCGAAAGGTAATTCAAGATAAGGATTGGTTTTTTCTATTTTCGTTTAATTTTATTCTTTTTATTAGGTTGGAATCGCTAAATTCATAACATTAATAAGGATGATTTCTCTATGAATAGTGATTTCTTCCCATTAGATCAATTTTTTTTTATCTTTTATCTTTTTCTTTTTGGATTTGGTCCTACCCAAAATTATTTTGATATATCCTGTCATATTTCTGAGTTTACACTCAATATAGCTCAATTTTGTAAATTTCTTGATTATAAAATGAGTTACTAAAAGAATATGGGACGAGTTTCTTTAATTGTTTAGAGTTTATGATTATTTTATGATCTACTTTTTAATATAGATGAAAATGTTTTTCATTGTCAACAACAGTGTGTAGAATTGAATAAAATTCAAAAAGTTATGTTTTTGTTTTGATACTGATTTAACTAAAGCATATCTGAAAGTTCTTCCATTAATACTTTGTGTGTGTGGTGTTATTTTCAAACAATTTCTTACTATTACGAAGAGAAACTATAATATTTGAAAAGAATTCATATTATATCAAATGATTTATTAATTTTTTTTAAGAATAAAATACATATAAATACAATGGGTGTACTAAGATTTTTCAATTAGGTTCACACACTTTGCATCTTTAGCACCATCATAAATGGTTATTAATTTTATTTTAAAAAGGTTTGAACTTCTAAGCTTTTTGGTTATGAGAACATATAGTTTATCCAAATCTCCTTTACTTTACTATTTGTAGCAAGAAATTTTGTTAGGTCTATATAAGTTGTTTTAAATCACTACTAAATCCCATTGCTCAACATATGGTATTTGAATATAGAGAATGAAATAATGATACAGACGCACTATAAAAAGGTTGGTATGAAGATTTGTGATCATATACTCTAATATTACATTAAATTGCCACGAAGATGTGACATAAAGATGATTAAACCTTGTAGATTAGGATACTAAATGGTAGTGATCATGATAGTAACCAAACATAGAAACCGAATACAAACTGGGGTATCTTGATGAGATAAAATGGCCGTGGCATTCCATTATTAAATGAATTCAATTAAAAATTAATCGTAAGATTGATTGTGACTAATGTAGTCTCTATTTTAATAATATATCTATCAAAATCAATTTCATGAAGTTTGATTGTGGGTTAATAATAGACATTGATATGATATGTTTTTGTTTATGTTCCTAATTGCAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGTAAGAAAAATCAATTTTAATTTAGAGGAATTATCATAAATATCAAAAATTAGAAACTATTTGCAAGTTGTCCCTTTAATCATGGACAAAATATGATATCCAACCCTAATTATCATTATTTTCTTTTTGTCATTCATGAAACAGAAATAATGATAATGTAAAGAAATGTCCATCTAGTGGAGATGTCGTAGTGTACCTATTAATCATGATCCTTCTGTATATTTTTTTAAAAGATATTCAATCCTAATTAGTATATACATACTAACATATCAAAGTTCCTTCTTATTCTATATTATATGCTTTTCTTTCTGTTTTTTTTAAAAAGATAGTTACTTCTTATTATATATGTTTTTTCAAACTAATTTAGATGTATTTGATATATATGTATGGCATTTTTAAATATAGTATAAAATATTTACAAACTATAGTAAAATTTTGGATTATATCAATGATAGAAACTGATAAACTTCTTTCGTTATCTATCAATGTCACTAATGGAAAAGGATATCAATGTCTATTATTGATAGAATTTAAAATTTTGCTATATGTTGTAAATATTTTGTCAAATTTGTTATTCTTGATAATTTTTTTATTATATTAATATTTCTTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAATTTTTTACACGAAAAATTTATTTAAAGTTAAATAGTTAAAATCTATATGTTACCTTATTTGTTATTATATATAGTTATTATTGTTTGGAACTATGATCAATCTCATAAAGTATAAAGAAAACTATGTTGAAAGAAAAAAGTTAGAAATAAGAGTCTACAATTTTGGTGTTTTCAAGTGCTTTTGTATTGTACCTTTTTCAAAAAACTTATAATTATATGGAAATGTTTCTTGACAAAAGAAAATATGTTCTCAACACAAGAACTAAATCTGACAACTTTTTCTATTTAATTATTTTACAATAAAATTGTCAGACACTGTTGTATTGATCGATTATGGAAGAAAAAAAATGACAGAATAAATTATATTCACATCGAATAACAATTCGTTCCTTGATTATTATGCAATAGTGGACATATATATTTCTGGAAATTCAATAACAATGTTGGGAATCCCCTTGTTGCATTATTGCAATACTACTCTTTGTTTTGCATTGATTGTCGCTTAATAATAGCATTGAGTGTTATAGATGATCTGTCAATCTAGTTGACATATTTGGATGTATATTTATTAATTCCTCTATCATTTAGCATCTTGAAAAAATAATAGCATGATCTACCGTATTATGTTGCAGTGTTAAACCTAAAATTAATATATAATAATGCTCCATATAAAATATTTTAAGTTTGATAAAAGGGTAAGTCATAAGTAAATAACCTTAAGTTTGAATAAACTTATGAATTGATAAAAATAATAGTGTGGTGTGATTCAATTGAAAATGAAACTAAAGAGGAAGTTTATATGTGTTTATTGTTTATTTGTGTGAGTAAATAAGTGACAAGCATTAGTTTTTTTGAGATATACAGGAGCAGGATCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGGTTCTTCTCTCTTTCTTCTTTTTTTTTTTCCTCTTTAAAGAAGATGGAGAAATATCTGTTCAACGACTTATTTTGTGTGCAATTTTAACATAATAAAATACCTTTGAAGTTCCATTCTTTCTTAGCTATATATGATTTCTGTAATTACCATCTTGATTTATTATATAAACTCTCTAACTATATCTTTAAGCCGTCCTTGATATTTTCTCTGATCTTTCTATTAGTCTGCAAACACAGCTAGTATTACTGTTAGTAAAATGCATAAATATTTGTGTCGATTGTTCTGCTGTTTCTGTGTATTTGCTTCTTTTTTTTTTTTTTTTTGTCCGCTTTATAACATTTTTTAAATTCACGAATATAGTAGAATATAAAACCAAAACAAAAGTTCTTTGCATGCAACACAGCTCGAAAAAGATCAGGAACAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTGAGAGCTGACGACCCAAACATGATCAACACCACCAGGTATTATGCATATTCAAACCAAATATTTAAGTTACTATATAATCTGAGAAGTGTTAATTGTGGTTACTAATAAGGTAGGCGTAGCCAAAATGATTAGTTTTGGGTTTGGTCTGTTTGAGTTTTAATGAACAGCAATAATAATAATAAAAGAAAAAACACACAGGTATTATGAAGCCCAAGAAGAAGAAGAAGAGTGCAGGGGGGTGATAGACGGTGGGAGTAACTTAATCCCAGATTGGCTACTTTGA

mRNA sequence

ATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGATCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTCGAAAAAGATCAGGAACAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTGAGAGCTGACGACCCAAACATGATCAACACCACCAGGTATTATGAAGCCCAAGAAGAAGAAGAAGAGTGCAGGGGGGTGATAGACGGTGGGAGTAACTTAATCCCAGATTGGCTACTTTGA

Coding sequence (CDS)

ATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGATCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTCGAAAAAGATCAGGAACAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTGAGAGCTGACGACCCAAACATGATCAACACCACCAGGTATTATGAAGCCCAAGAAGAAGAAGAAGAGTGCAGGGGGGTGATAGACGGTGGGAGTAACTTAATCCCAGATTGGCTACTTTGA

Protein sequence

MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL*
Homology
[Close]
BLAST of Csa3G179130 vs. TrEMBL
Match: A0A0A0L6C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179130 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.6e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ 60
           MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ
Sbjct: 1   MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ 60

Query: 61  EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL 115
           EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL
Sbjct: 61  EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL 114

[Close]
BLAST of Csa3G179130 vs. NCBI nr
Match: gi|700202190|gb|KGN57323.1| (hypothetical protein Csa_3G179130 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.2e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ 60
           MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ
Sbjct: 1   MNKILERYHQQCYTSGSTTNLDESDVQAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ 60

Query: 61  EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL 115
           EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL
Sbjct: 61  EQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL 114

[Close]
BLAST of Csa3G179130 vs. NCBI nr
Match: gi|778679422|ref|XP_011651126.1| (PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-51
Identity = 114/166 (68.67%), Postives = 114/166 (68.67%), Query Frame = 1 

Query: 1   MNKILERYHQQCYTSGSTTNLDESDVQ--------------------------------- 60
           MNKILERYHQQCYTSGSTTNLDESDVQ                                 
Sbjct: 62  MNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLKE 121

Query: 61  -------------------AEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEQEGGEED 115
                              AEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEQEGGEED
Sbjct: 122 LHNLEKQLDKTLSQARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEQEGGEED 181

[Close]
BLAST of Csa3G179130 vs. NCBI nr
Match: gi|659077324|ref|XP_008439145.1| (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.5e-37
Identity = 82/97 (84.54%), Postives = 86/97 (88.66%), Query Frame = 1 

Query: 27  QAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQ------EQEGGEEDPKNYEVVRADDP 86
           +AEIMLQKLADL KMEQDLGDQN QLKSKLEKDQ      EQEGGEEDPKNYEVVRADDP
Sbjct: 140 KAEIMLQKLADLHKMEQDLGDQNNQLKSKLEKDQDQQCVQEQEGGEEDPKNYEVVRADDP 199

Query: 87  NMINTTRYYEAQ---EEEEECRGVIDGGSNLIPDWLL 115
           NM+NTTRY+EAQ   EEEEECRG+IDGGSNLIPDWLL
Sbjct: 200 NMVNTTRYFEAQEEEEEEEECRGMIDGGSNLIPDWLL 236

[Close]
BLAST of Csa3G179130 vs. NCBI nr
Match: gi|659077324|ref|XP_008439145.1| (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 66/175 (37.71%), Postives = 83/175 (47.43%), Query Frame = 1 

Query: 1   MNKILERYHQQCYTSGSTTNLDESDVQAE--------------------------IMLQK 60
           MNKILERYHQQCYTSGSTTNLDESD+Q E                          + L++
Sbjct: 62  MNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLKE 121

Query: 61  LADLRKMEQDLGDQNTQLKSK--------LEKDQEQEGGEEDPKNYEVVRADDPNMIN-- 115
           L +L K       Q  Q K++        L K ++  G + +    ++ +  D   +   
Sbjct: 122 LHNLEKQLDKTLSQARQRKAEIMLQKLADLHKMEQDLGDQNNQLKSKLEKDQDQQCVQEQ 181

The following BLAST results are available for this feature:
BLAST of Csa3G179130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6C1_CUCSA3.6e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179130 PE=4 SV=1[more]
BLAST of Csa3G179130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202190|gb|KGN57323.1|5.2e-59100.00hypothetical protein Csa_3G179130 [Cucumis sativus][more]
gi|778679422|ref|XP_011651126.1|1.0e-5168.67PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus][more]
gi|659077324|ref|XP_008439145.1|9.5e-3784.54PREDICTED: MADS-box transcription factor 17-like [Cucumis melo][more]
gi|659077324|ref|XP_008439145.1|3.7e-1737.71PREDICTED: MADS-box transcription factor 17-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU143650cucumber EST collection version 3.0transcribed_cluster
CU158973cucumber EST collection version 3.0transcribed_cluster
CU168850cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G179130.1Csa3G179130.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU168850CU168850transcribed_cluster
CU143650CU143650transcribed_cluster
CU158973CU158973transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 38..62
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G179130MELO3C031794.2Melon (DHL92) v3.6.1cumedB223
Csa3G179130Bhi01G001019Wax gourdcuwgoB286
Csa3G179130CSPI03G16420Wild cucumber (PI 183967)cpicuB120
Csa3G179130Cucsa.251170Cucumber (Gy14) v1cgycuB366
Csa3G179130CsGy3G016530Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G179130Cucumber (Chinese Long) v2cucuB102
Csa3G179130Cucumber (Chinese Long) v2cucuB125
Csa3G179130Cucumber (Gy14) v1cgycuB430
Csa3G179130Cucurbita maxima (Rimu)cmacuB283
Csa3G179130Cucurbita maxima (Rimu)cmacuB329
Csa3G179130Cucurbita maxima (Rimu)cmacuB408
Csa3G179130Cucurbita maxima (Rimu)cmacuB596
Csa3G179130Cucurbita maxima (Rimu)cmacuB603
Csa3G179130Cucurbita moschata (Rifu)cmocuB269
Csa3G179130Cucurbita moschata (Rifu)cmocuB317
Csa3G179130Cucurbita moschata (Rifu)cmocuB398
Csa3G179130Cucurbita moschata (Rifu)cmocuB583
Csa3G179130Melon (DHL92) v3.5.1cumeB173
Csa3G179130Melon (DHL92) v3.5.1cumeB236
Csa3G179130Watermelon (Charleston Gray)cuwcgB208
Csa3G179130Watermelon (Charleston Gray)cuwcgB222
Csa3G179130Watermelon (Charleston Gray)cuwcgB250
Csa3G179130Watermelon (97103) v1cuwmB233
Csa3G179130Watermelon (97103) v1cuwmB262
Csa3G179130Cucurbita pepo (Zucchini)cpecuB039
Csa3G179130Cucurbita pepo (Zucchini)cpecuB171
Csa3G179130Cucurbita pepo (Zucchini)cpecuB214
Csa3G179130Cucurbita pepo (Zucchini)cpecuB719
Csa3G179130Cucurbita pepo (Zucchini)cpecuB725
Csa3G179130Bottle gourd (USVL1VR-Ls)culsiB156
Csa3G179130Bottle gourd (USVL1VR-Ls)culsiB210
Csa3G179130Cucumber (Gy14) v2cgybcuB213
Csa3G179130Melon (DHL92) v3.6.1cumedB154
Csa3G179130Silver-seed gourdcarcuB0007
Csa3G179130Silver-seed gourdcarcuB0730
Csa3G179130Silver-seed gourdcarcuB0885
Csa3G179130Silver-seed gourdcarcuB0933
Csa3G179130Silver-seed gourdcarcuB0952
Csa3G179130Watermelon (97103) v2cuwmbB204
Csa3G179130Watermelon (97103) v2cuwmbB179