Cucsa.249070 (gene) Cucumber (Gy14) v1

NameCucsa.249070
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionElongation factor 1-alpha
Locationscaffold02208 : 224520 .. 225947 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAACTCATTTTTTTCTTTTtCTTTTTTtAATATGTTCTTGGTGTGGTGTACTAGACAAGGTGGGGGAAAACGATGGGGGTTTTGCTGTTTGTTTCTCGGGGAATTGACTGGGAAAATTACAAGGGTTTGGTTGGTGAGAGATTCGTGGCTTAGCTACATGGGCTGTCTACTTCTTTTTCTTTCATTATTTTAAAATATTATGATTCGCTTTGTAATTCTGATGTTGATGTTTTATTTCTTTCTATCTATTTATCTTTCGTTTTATTTCTAAATTATGGAGTACAATGGCTTCTTCTAATTTTtGGTCGGTGTAATTTTGAAAACGTCTATTTCAATCAATCTACTTTTTAAGAGTATGTATTGTTTTAAATGAAAGTTATAGTACCAAGTGAAGGACTTGAGAATATATATTAATTTCACACTAATTAACACAAATTCCAAATTAATAATTGTGCCATTTGATTTTTTTtAGTCCAAGTTTTTACGATGTTTATATGTACTTTAATTTGACAGCAAAGCCATTGATGGGTAAGCAAGGAAGAATTATATTAGTTCAATTGAGTTGCATATTAACTATATATTTTTTAAGGTTAATGTTTGATTATTTGGTTTTATGCTTGAGATTATTATTATAATTTAATTTATACATGATTCATCTTACAATTTGACTATTTTCTCCTTTATTATAAAATTAAGCAAAAAAAaaTATTAATATCATAAGGTGCATAATTTCACCGACTACAAATTTAAGTATCCTCTCGAGTAGAGGAAAATTGGAAATAATTGGGTTTATATATATATATATAAATGTTATTATGAACGAAATAATAAAGAAATATAAATGTTTGTTGTAATAGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGTAAGTCTTCAAAAAGTTCGTGTGCATCCACTCCATCAAGTGGGACCCTAACGAGCGACTATCACACATCGTCCGTTGATCTGTCCCCAAAAAGCCTGGAGAAGCACTGTCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTTGAGAGAATGGATAATCTCGAGGATAGAGTCCTCAAGGTAGAAAAAATAATTAATTATTAGAATATTGTTGATAGATTTATGCATTAATTCATTCATATTGCTATGCTGTTAATACTCTCTTCTGACATGGAGTGGAACTTTTTGAAACAGCTTTGTATACAAGTAGAGGGAGATTTAGAAAGGGAGAAGGATATGATAATGGTCGAGAAGAAGGAGAGGAAACCCAAGAGAAGCTTTAAACAACTTGTTCAACGGTGCATGACTGGGCAGGGAACAAGACGCGACTCGTGGTCTTGATCTTGACCATGTTTGTTTATTCGTTTTtCTTGTTTGTAGGACTTAATTTTCTTTTTAGTACGTAATTTCTTGAGTTG

mRNA sequence

ATGGTTAACTCATTTTTTTCTTTTTCTTTTTTTAATATGTTCTTGGTGTGGTGTACTAGACAAGGTGGGGGAAAACGATGGGGGTTTTGCTGTTTGTTTCTCGGGGAATTGACTGGGAAAATTACAAGGGTTTGGTTGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGTAAGTCTTCAAAAAGTTCGTGTGCATCCACTCCATCAAGTGGGACCCTAACGAGCGACTATCACACATCGTCCGTTGATCTGTCCCCAAAAAGCCTGGAGAAGCACTGTCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTTGAGAGAATGGATAATCTCGAGGATAGAGTCCTCAAGCTTTGTATACAAGTAGAGGGAGATTTAGAAAGGGAGAAGGATATGATAATGGTCGAGAAGAAGGAGAGGAAACCCAAGAGAAGCTTTAAACAACTTGTTCAACGGTGCATGACTGGGCAGGGAACAAGACGCGACTCGTGGTCTTGATCTTGACCATGTTTGTTTATTCGTTTTTCTTGTTTGTAGGACTTAATTTTCTTTTTAGTACGTAATTTCTTGAGTTG

Coding sequence (CDS)

ATGGTTAACTCATTTTTTTCTTTTtCTTTTTTtAATATGTTCTTGGTGTGGTGTACTAGACAAGGTGGGGGAAAACGATGGGGGTTTTGCTGTTTGTTTCTCGGGGAATTGACTGGGAAAATTACAAGGGTTTGGTTGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGTAAGTCTTCAAAAAGTTCGTGTGCATCCACTCCATCAAGTGGGACCCTAACGAGCGACTATCACACATCGTCCGTTGATCTGTCCCCAAAAAGCCTGGAGAAGCACTGTCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTTGAGAGAATGGATAATCTCGAGGATAGAGTCCTCAAGCTTTGTATACAAGTAGAGGGAGATTTAGAAAGGGAGAAGGATATGATAATGGTCGAGAAGAAGGAGAGGAAACCCAAGAGAAGCTTTAAACAACTTGTTCAACGGTGCATGACTGGGCAGGGAACAAGACGCGACTCGTGGTCTTGA

Protein sequence

MVNSFFSFSFFNMFLVWCTRQGGGKRWGFCCLFLGELTGKITRVWLLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTRRDSWS*
BLAST of Cucsa.249070 vs. TrEMBL
Match: A0A0A0LCD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.7e-63
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LRRLEEIRGCGKS KSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL
Sbjct: 18  MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR 165
           KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR
Sbjct: 78  KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR 137

Query: 166 RDSWS 171
           RDSWS
Sbjct: 138 RDSWS 142

BLAST of Cucsa.249070 vs. TrEMBL
Match: A0A061DWD6_THECC (Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-30
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1

Query: 46   LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDL-SPKSLEKHCRPINHVVKVAE 105
            +LR+LEEIRGC KS +SSCASTPSSGT TS+ H SSVDL SP SLEKHCRPI+HV+   +
Sbjct: 1100 MLRQLEEIRGCSKSPRSSCASTPSSGTFTSEGHPSSVDLASPSSLEKHCRPIDHVMVETQ 1159

Query: 106  LKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGT 165
            +KG+L++R+D LEDR+LKLC+++E +LE EK      +K    K+  KQ V++C+ G+ +
Sbjct: 1160 VKGTLIQRLDQLEDRLLKLCLRLEEELEAEKRREESVEKRPAHKKGIKQFVKQCVKGKHS 1219

BLAST of Cucsa.249070 vs. TrEMBL
Match: B9T1P6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-29
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LR+LE++RG  +S KSSCASTPSSGTLTS+ H SS+DLSPKSLEKHCRPIN V+   E+
Sbjct: 18  MLRQLEDMRGSNRSPKSSCASTPSSGTLTSEGHVSSIDLSPKSLEKHCRPINRVMMETEI 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQ 163
           KG+LVER+D LEDR+LKLC+Q+E  LE E+      ++    K+  K LV+  + G+
Sbjct: 78  KGTLVERLDLLEDRLLKLCMQLEEGLEAERKREEENRERSGKKKGLKGLVRNIVKGK 134

BLAST of Cucsa.249070 vs. TrEMBL
Match: D7T306_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00910 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.3e-28
Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKH-CRPINHVVKVAE 105
           +LR+LEEIRGC +SSKSSCASTPSSG LTSD  TSSVDLSPKSLEKH CRPI  V    E
Sbjct: 59  ILRQLEEIRGCSRSSKSSCASTPSSGALTSDGQTSSVDLSPKSLEKHQCRPIADVRTETE 118

Query: 106 LKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKP--KRSFKQLVQRCMTG 162
           +KGSL+ER+  +E R+LKLC+QVE +LE EK     E+K R    K+  KQ V+ C+ G
Sbjct: 119 VKGSLMERLVQVEVRLLKLCLQVEEELEEEKRR---EEKARSKAHKKGLKQFVKSCVKG 174

BLAST of Cucsa.249070 vs. TrEMBL
Match: A0A0R0GRF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LR+LE IRGC  S KSSCASTP+SG   SD H SS D SPKSLEKHCRPI  V+   E+
Sbjct: 18  MLRQLEVIRGCNPSPKSSCASTPTSG---SDGHVSSTDFSPKSLEKHCRPIEFVMMETEV 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQG 164
           KG+++ER++ +EDR+LKLC+Q+E +L  +K     EKK   PK+ FKQLV++C+  +G
Sbjct: 78  KGTMIERLNQVEDRMLKLCLQLEEELVAKKK--EEEKKMNSPKKGFKQLVKQCVKARG 130

BLAST of Cucsa.249070 vs. TAIR10
Match: AT1G07985.1 (AT1G07985.1 Expressed protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-16
Identity = 52/118 (44.07%), Postives = 78/118 (66.10%), Query Frame = 1

Query: 45  WLLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLS-PKSLEK-HCRPINHVVKV 104
           +++R+LEE++G   S +SS  STPSSGT       SS+DLS P+S+ K HCR +  V + 
Sbjct: 17  FMVRKLEEMKG--SSPRSSSPSTPSSGT-----QPSSMDLSSPRSIGKVHCRSMEQVREE 76

Query: 105 AELKGSLVERMDNLEDRVLKLCIQVEGDLEREK---DMIMVEKKERKPKRSFKQLVQR 158
            E KG+L+ER++N+E++VLKLC Q E ++E E+   D    EKK  K K+  ++LV +
Sbjct: 77  TERKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKKTPKKKKGLRKLVDK 127

BLAST of Cucsa.249070 vs. NCBI nr
Match: gi|449466687|ref|XP_004151057.1| (PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 3.9e-63
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LRRLEEIRGCGKS KSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL
Sbjct: 18  MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR 165
           KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR
Sbjct: 78  KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTR 137

Query: 166 RDSWS 171
           RDSWS
Sbjct: 138 RDSWS 142

BLAST of Cucsa.249070 vs. NCBI nr
Match: gi|659123713|ref|XP_008461800.1| (PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 7.2e-57
Identity = 111/126 (88.10%), Postives = 122/126 (96.83%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LRRLEEI+GC KS KSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVV+VAEL
Sbjct: 18  MLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVRVAEL 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMV-EKKERKPKRSFKQLVQRCMTGQGT 165
           KGSLVERMDNLEDRVLKLCIQVEG++EREKDM+MV +KK++KPK+SFKQLVQ+CMTGQGT
Sbjct: 78  KGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKPKKSFKQLVQQCMTGQGT 137

Query: 166 RRDSWS 171
            RDSWS
Sbjct: 138 TRDSWS 143

BLAST of Cucsa.249070 vs. NCBI nr
Match: gi|1009129323|ref|XP_015881704.1| (PREDICTED: uncharacterized protein LOC107417610 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSS---KSSCASTPSSGTLTS-DYHTSSVDLSPKSLEKHCRPINHVVK 105
           +LR+LEEIRGC +SS   KSS ASTPSSGTLTS D H SS+D SPKS+EKHCRPI+HV+ 
Sbjct: 22  MLRQLEEIRGCNRSSSSPKSSYASTPSSGTLTSTDGHLSSLDFSPKSIEKHCRPIDHVIM 81

Query: 106 VAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTG 163
              +KG+L+ER+D++EDRVLKLC+Q+E  LE EK     EKKER  K   KQLV++C+ G
Sbjct: 82  ETGVKGTLIERLDHVEDRVLKLCLQMEEGLEAEKKREETEKKERNNK-GLKQLVKQCLKG 141

BLAST of Cucsa.249070 vs. NCBI nr
Match: gi|590724636|ref|XP_007052525.1| (Cellulose synthase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 139.0 bits (349), Expect = 7.5e-30
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1

Query: 46   LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDL-SPKSLEKHCRPINHVVKVAE 105
            +LR+LEEIRGC KS +SSCASTPSSGT TS+ H SSVDL SP SLEKHCRPI+HV+   +
Sbjct: 1100 MLRQLEEIRGCSKSPRSSCASTPSSGTFTSEGHPSSVDLASPSSLEKHCRPIDHVMVETQ 1159

Query: 106  LKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGT 165
            +KG+L++R+D LEDR+LKLC+++E +LE EK      +K    K+  KQ V++C+ G+ +
Sbjct: 1160 VKGTLIQRLDQLEDRLLKLCLRLEEELEAEKRREESVEKRPAHKKGIKQFVKQCVKGKHS 1219

BLAST of Cucsa.249070 vs. NCBI nr
Match: gi|255582779|ref|XP_002532165.1| (PREDICTED: uncharacterized protein LOC8271835 isoform X1 [Ricinus communis])

HSP 1 Score: 135.6 bits (340), Expect = 8.3e-29
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1

Query: 46  LLRRLEEIRGCGKSSKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAEL 105
           +LR+LE++RG  +S KSSCASTPSSGTLTS+ H SS+DLSPKSLEKHCRPIN V+   E+
Sbjct: 18  MLRQLEDMRGSNRSPKSSCASTPSSGTLTSEGHVSSIDLSPKSLEKHCRPINRVMMETEI 77

Query: 106 KGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQ 163
           KG+LVER+D LEDR+LKLC+Q+E  LE E+      ++    K+  K LV+  + G+
Sbjct: 78  KGTLVERLDLLEDRLLKLCMQLEEGLEAERKREEENRERSGKKKGLKGLVRNIVKGK 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LCD9_CUCSA2.7e-6398.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1[more]
A0A061DWD6_THECC5.2e-3056.20Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1[more]
B9T1P6_RICCO5.8e-2957.26Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1[more]
D7T306_VITVI8.3e-2862.18Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00910 PE=4 SV=... [more]
A0A0R0GRF8_SOYBN1.4e-2755.93Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G07985.11.7e-1644.07 Expressed protein[more]
Match NameE-valueIdentityDescription
gi|449466687|ref|XP_004151057.1|3.9e-6398.40PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus][more]
gi|659123713|ref|XP_008461800.1|7.2e-5788.10PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo][more]
gi|1009129323|ref|XP_015881704.1|2.0e-3061.98PREDICTED: uncharacterized protein LOC107417610 isoform X1 [Ziziphus jujuba][more]
gi|590724636|ref|XP_007052525.1|7.5e-3056.20Cellulose synthase family protein isoform 1 [Theobroma cacao][more]
gi|255582779|ref|XP_002532165.1|8.3e-2957.26PREDICTED: uncharacterized protein LOC8271835 isoform X1 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.249070.1Cucsa.249070.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34190FAMILY NOT NAMEDcoord: 46..167
score: 4.7
NoneNo IPR availablePANTHERPTHR34190:SF4SUBFAMILY NOT NAMEDcoord: 46..167
score: 4.7